Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/seqan2.spec'], chrootPath='/var/lib/mock/f29-build-13863-6136/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '772b24641b0d4537bea07ac67d07d246', '-D', '/var/lib/mock/f29-build-13863-6136/root', '-a', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/seqan2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/seqan2-2.4.0-3.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/seqan2.spec'], chrootPath='/var/lib/mock/f29-build-13863-6136/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3cca852c7a8f452287f2ec1ba674f7ee', '-D', '/var/lib/mock/f29-build-13863-6136/root', '-a', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/seqan2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Z1I3BQ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf seqan-seqan-v2.4.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/seqan-seqan-v2.4.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd seqan-seqan-v2.4.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (seqan-disable_stripping.patch): + echo 'Patch #0 (seqan-disable_stripping.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file util/cmake/SeqAnBuildSystem.cmake Hunk #1 succeeded at 347 (offset 8 lines). + echo 'Patch #1 (seqan2-set_config_filepath.patch):' Patch #1 (seqan2-set_config_filepath.patch): + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file util/cmake/SeqAnBuildSystem.cmake Hunk #1 succeeded at 407 (offset 8 lines). Hunk #2 succeeded at 481 (offset 8 lines). Patch #2 (seqan2-set_awk_installation.patch): + echo 'Patch #2 (seqan2-set_awk_installation.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file apps/ngs_roi/CMakeLists.txt BUILDSTDERR: ++ find . -type f '(' -name '*.h' -o -name '*.cpp' ')' + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/mingw/mingw_path_fix/seqan_mingw_fix.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/makefile_project/src/main.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/skel/demo_template/demo.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/skel/app_template/app.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/skel/module_template/module.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/skel/module_template/header.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/skel/header_template/library_header.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/skel/header_template/header.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/skel/test_template/test.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/skel/test_template/test.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/raw_cmake_project/src/main.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/cmake/GetCurrentDate.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/py_lib/seqan/dox/test_src/example.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/py_lib/seqan/dox/test/example.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/py_lib/seqan/dox/test/test.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./util/py_lib/seqan/dox/demo.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/seqan_tcoffee/seqan_tcoffee.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rep_sep/utils.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rep_sep/rgraph_heuristics.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rep_sep/assembly_parser.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rep_sep/rgraph.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rep_sep/rgraph_score.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rep_sep/rgraph_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rep_sep/rgraph_construction.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rep_sep/column_scanner.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rep_sep/rep_sep.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers/paramChooser.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers/readSimulator.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers/param_tabs.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers/outputFormat.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers/razers.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers/razers.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers/razers_matepairs.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers/razers_spliced.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers/param_tabs.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/sam2matrix/sam2matrix.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/fx_tools/fx_fastq_stats.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/fx_tools/fx_bam_coverage.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/methylation_levels.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/mason_options.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/fragment_generation.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/mason_simulator.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/external_split_merge.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/mason_variator.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/variation_size_tsv.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/mason_tests.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/genomic_variants.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/simulate_genome.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/omp_wrapper.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/mason_methylation.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/simulate_base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/vcf_materialization.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/mason_splicing.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/mason_frag_sequencing.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/mason_types.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/external_split_merge.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/methylation_levels.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/mason_genome.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/mason_options.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/individual_genome.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/sequencing.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/vcf_materialization.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/simulate_illumina.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/simulate_sanger.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/mason_materializer.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/genomic_variants.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/simulate_genome.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/mason2/simulate_454.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/param_chooser/param_chooser.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/param_chooser/test_param_chooser.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x 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-type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rabema/find_myers_ukkonen_ext.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rabema/find_myers_ukkonen_reads.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rabema/rabema_stats.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/rabema/ref_id_mapping.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/gustaf/join_mates.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/gustaf/gustaf.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/gustaf/msplazer.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/gustaf/msplazer_algorithms.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/gustaf/msplazer_out.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/gustaf/stellar_routines.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/gustaf/create_stellarmatches_from_file.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/gustaf/gustaf_matepairs.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/gustaf/msplazer_parse_options.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/gustaf/msplazer_main.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/snp_store/snp_store.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/snp_store/snp_store.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/splazers/paramChooser.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/splazers/readSimulator.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x 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-type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/mapper_writer.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/mapper_aligner.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/misc_options.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/misc_tags.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/bits_bucket.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/mapper_classifier.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/mapper_verifier.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/misc_timer.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/find_verifier.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/store_seqs.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/file_pair.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/bits_hits.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/bits_matches.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/yara/basic_alphabet.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/fiona/compute_gain.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/fiona/fiona.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/fiona/index_qgram_parallel.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/fiona/error_rate_from_sam.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/paramChooser.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/readSimulator.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/job_queue.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/razers_match_filter.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/quality2prob.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/simulate_reads.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/param_tabs.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/outputFormat.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/parallel_job_queue.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/razers_window.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/razers.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/razers_paired_match_filter.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/razers_parallel.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/razers.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/compPHSens.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/parallel_store.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/razers_matepairs_parallel.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/razers_matepairs.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/profile_timeline.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/parallel_misc.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/razers3/param_tabs.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/seqcons2/seqcons_options.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/seqcons2/seqcons_app.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/seqcons2/seqcons_app.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/seqcons2/seqcons_options.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/seqcons2/seqcons.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/searchjoin/finder.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/searchjoin/search.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/searchjoin/db.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/searchjoin/verifier.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/searchjoin/join.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/searchjoin/writer.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/tree_recon/tree_recon.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/stellar/stellar_output.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/stellar/stellar_extension.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/stellar/stellar.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/stellar/stellar_types.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/stellar/stellar.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/sak/sak.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/insegt/insegt.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/insegt/overlap_module.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/insegt/create_gff.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/insegt/fusion.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/insegt/base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/casbar_alphabets.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/casbar_score.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/casbar_util.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/casbar_calling.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/bisar.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/bisar.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/casbar_realignment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/casbar_score_data.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/bisar_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/casbar_consensus_realign.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/bisar_score_data.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/four2three.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/four2three.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/bisar_score.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/casbar.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/bs_tools/casbar.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/micro_razers/micro_razers.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/micro_razers/outputFormat.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/pair_align/lib/pair_align_lib.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/pair_align/lib/pair_align_lib.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/pair_align/lib/pair_align_global.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/pair_align/lib/pair_align_lcs.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/pair_align/lib/pair_align_local.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/pair_align/pair_align.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/project_interval.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/project_interval.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/roi_plot_thumbnails.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/bam2roi.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/project_spliced.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/record_ext.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/roi_feature_projection.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/roi_builder.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/png_canvas.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/roi_builder.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/project_spliced.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/ngs_roi/bam2roi.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/alf/alf.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/sgip/sgip_output.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/sgip/sgip.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/sgip/sgip_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/sgip/sgip.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/samcat/samcat.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./apps/dfi/dfi.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/store/test_store.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/store/test_store_io_bam.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/store/test_store_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/consensus_v2/test_consensus_v2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/graph_algorithms/test_graph_algorithms.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/graph_algorithms/test_graph_algorithms.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/test_seeds_extension.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/test_seeds_combination.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/seed_set_test_helpers.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/test_seeds_seed_diagonal.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/test_seeds_seed_chained.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/test_align_banded_chain_impl.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/test_seeds_seed_set_unordered.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/test_seeds_seed_simple.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/test_seeds_seed_base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/test_seeds_global_chaining.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/test_seeds_seed_set_base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/seeds/test_banded_chain_alignment_interface.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/parallel/test_parallel_thread_pool.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/parallel/test_parallel_splitting.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/parallel/test_parallel_atomic_misc.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/parallel/test_parallel_algorithms.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/parallel/test_parallel_queue.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/parallel/test_parallel_atomic_primitives.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/parallel/test_parallel_enumerable_thread_local.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/parallel/test_parallel.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/rna_io/test_rna_io.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/rna_io/test_rna_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align_extend/test_align_extend.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align_extend/test_align_extend.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/blast/test_blast_misc.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/blast/test_blast_output.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/blast/test_blast.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/blast/test_blast_statistics.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/blast/test_blast_input.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/arg_parse/test_arg_parse_version_check.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/arg_parse/test_arg_parse_argument.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/arg_parse/test_arg_parse.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/arg_parse/test_arg_parse_version_check.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/arg_parse/test_arg_parse_option.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/arg_parse/test_arg_parse_ctd_support.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/arg_parse/test_extensions.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/arg_parse/test_arg_parse.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/arg_parse/test_argument_parser.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/simple_intervals_io/test_simple_intervals_io.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/random/test_random_beta.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/random/test_random_util.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/random/test_random.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/random/test_random_basic.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/simd/test_simd_vector.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/simd/test_simd_vector.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/gff_io/test_gff_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/gff_io/test_gff_io.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_aggregate.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_alphabet_concepts.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_fundamental.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_fundamental_conversion.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_array_constructor_destruct.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_alphabet_bio.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_proxy.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_alphabet.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_aggregate.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_tag.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_fundamental_metafunctions.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_fundamental_helpers.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_smart_pointer.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_alphabet_profile.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x 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-name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_metaprogramming.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_array_construct_destruct.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_construct_destruct.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_concept.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_metaprogramming.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_fundamental_comparison.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_allocator.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_math.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_concepts.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_metaprogramming_enable_if.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_type.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_metaprogramming_logic.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_alphabet_qualities.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_alphabet_storage.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_exception.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_smart_pointer_holder.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_iterator_zip.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_holder.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_hosted_type_interface.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_alphabet_math.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_transport.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_proxy.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_parallelism.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_metaprogramming_type.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/basic/test_basic_alphabet_simple_type.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/reduced_aminoacid/test_reduced_aminoacid.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/reduced_aminoacid/test_reduced_aminoacid.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/parse_lm/test_parse_lm.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/parse_lm/test_parse_lm.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align_profile/test_align_profile.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_alignment_dp_trace_segment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_align_simd_local_equal_length.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_align_simd_global_variable_length.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_align.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_align_simd_local.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_align_global_alignment_banded.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_align_align.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_mock.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_alignment_algorithms_global_banded.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_local_align.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_alignment_dp_cell.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_align_local_alignment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_evaluate_alignment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_align_simd_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_align_simd_global.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_alignment_dp_formula.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_align_global_alignment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_alignment_dp_matrix.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_alignment_algorithms_global.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/align/test_alignment_dp_traceback.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod 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"*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/sequence/test_string_set.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/sequence/test_sequence.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/sequence/test_segment_beta.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/roi_io/test_roi_io.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/statistics/test_statistics_markov_model.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/statistics/test_statistics.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/statistics/test_statistics_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/vcf_io/test_vcf_io.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/vcf_io/test_vcf_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/consensus/test_consensus.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/consensus/test_consensus_realign.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/consensus/test_consensus.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/score/test_score.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/journaled_string_tree/test_journaled_string_tree_mock.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/journaled_string_tree/test_journaled_string_tree_traverser.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/journaled_string_tree/test_delta_map.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/journaled_string_tree/test_journaled_string_tree_find.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/journaled_string_tree/test_delta_store.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/journaled_string_tree/test_basic_observable.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/journaled_string_tree/test_delta_map.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/journaled_string_tree/test_journaled_string_tree.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/journaled_string_tree/test_journaled_string_tree.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./tests/journaled_string_tree/test_journaled_string_tree_find.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x 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./include/seqan/basic/basic_aggregate.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/allocator_to_std.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/iterator_range.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/iterator_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_fundamental.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/container_concept.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_device.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/macro_deprecated.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/alphabet_residue_funcs.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_smart_pointer.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_exception.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/iterator_adaptor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/alphabet_qualities.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/test_system.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/aggregate_concept.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/metaprogramming_enable_if.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/concept_checking.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/iterator_interface.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_tangle.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/iterator_position.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/boost_preprocessor_subset.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/metaprogramming_type.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_concept.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/fundamental_concepts.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/debug_test_system.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_type.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/pair_bit_compressed.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/fundamental_chunking.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/metaprogramming_control.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_functors.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/debug_helper.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/iterator_zip.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/allocator_interface.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/hosted_type_interface.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_stream.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/metaprogramming_math.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/holder_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_container.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/property_map_concept.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/fundamental_tags.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_debug.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_proxy.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_parallelism.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/pair_packed.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/alphabet_simple_type.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/iterator_adapt_pointer.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/builtin_functions.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/iterator_concept.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/profiling.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/allocator_singlepool.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_allocator.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/allocator_chunkpool.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/triple_packed.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/tuple_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/iterator_counting.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/alphabet_profile.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_view.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/allocator_multipool.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_math.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/pair_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/holder_tristate.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/metaprogramming_type_algebra.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/proxy_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/alphabet_residue.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/fundamental_comparison.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/alphabet_concept.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/fundamental_metafunctions.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/triple_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/tuple_bit_compressed.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_metaprogramming.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/holder_simple.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/fundamental_conversion.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/math_functions.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/alphabet_adapt_builtins.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/iterator_adapt_std.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/allocator_simple.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/alphabet_storage.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/metaprogramming_logic.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/basic_alphabet.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic/math_log_space_value.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_extend.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bed_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/map.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/simple_intervals_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_tables.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_tables.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_li10_tables.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_base_late.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_li10_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_tables.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_tables.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/realign.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_align.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/basic.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/roi_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/parse_lm/local_match_store.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/parse_lm/parse_blastn_tabular.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/parse_lm/parse_stellar_gff.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/parse_lm/parse_lastz_general.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_profile/add_to_profile.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_profile/score_profile_seq.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_formula_affine.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_traceback_impl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/fragment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_cell_affine.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_setup.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/local_alignment_enumeration_banded.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/align_interface_wrapper.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_formula_linear.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/global_alignment_banded.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/local_alignment_unbanded.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_scout_simd.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_matrix_navigator_score_matrix.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_matrix.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/align_iterator_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/local_alignment_enumeration.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/gap_anchor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/align_cols.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/matrix_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_matrix_sparse.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/global_alignment_myers_hirschberg_impl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_formula_dynamic.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/global_alignment_unbanded.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/global_alignment_myers_impl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_matrix_navigator_trace_matrix.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_cell_dynamic.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_formula.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_trace_segment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/local_alignment_waterman_eggert_impl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_align_simd_helper.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/global_alignment_specialized.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_profile.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/gaps_array.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/gaps_iterator_anchor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/align_config.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/alignment_algorithm_tags.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/global_alignment_hirschberg_impl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/aligned_sequence_concept.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/gapped_value_type.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/local_alignment_enumeration_unbanded.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_cell_linear.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_algorithm_impl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_meta_info.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/gaps_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/gaps_iterator_array.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_context.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/alignment_operations.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/align_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_scout.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/gaps_anchor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/align_metafunctions.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/local_alignment_banded.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_traceback_adaptor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/evaluate_alignment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/align_traceback.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_cell.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/local_alignment_banded_waterman_eggert_impl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_matrix_navigator.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/dp_band.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align/gaps_iterator_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/iostream_bzip2.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/stream_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/file_stream.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/buffered_stream.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/adapt_ios.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/tokenization.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/iostream_bzip2_impl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/lexical_cast.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/virtual_stream.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/iter_stream.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/iostream_zip.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/iostream_zutil.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/stream_compressor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/guess_format.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/iostream_bgzf.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/formatted_file.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream/iostream_zip_impl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/seq_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/accumulators.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/bit_twiddling_functors.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/map.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/svg.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/set.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/edit_environment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/priority_type_heap.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/interval_tree.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/union_find.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/priority_type_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/name_store_cache.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/dequeue.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/terminal.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/memset.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/misc/bit_twiddling.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_align/graph_algorithm_refine_inexact.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_align/graph_algorithm_refine_aligngraph.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_align/graph_impl_align_adapt.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_align/graph_algorithm_refine_annotation.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_align/graph_algorithm_refine_fragment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_align/graph_algorithm_refine_scoring.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_align/graph_impl_align.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_align/graph_algorithm_refine_exact.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_align/graph_algorithm_refine_align.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/dp_kernel_adaptor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/wavefront_alignment_result.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/wavefront_alignment_executor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/wavefront_task_util.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/dp_traits.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/wavefront_task_executor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/async_wave_execution_interface.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/wavefront_task.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/wavefront_alignment_scheduler.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/wavefront_task_event.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/wavefront_alignment_task.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/dp_settings.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/wavefront_alignment_thread_local_storage.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/wavefront_task_queue.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/wavefront_task_scheduler.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/dp_parallel_scout.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/dp_parallel_scout_simd.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/dp_parallel_execution_policies.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel/parallel_align_interface.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/parse_lm.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/system.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/platform.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_profile.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/adapt_stl_container.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_cstyle.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_alloc.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_block.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_array.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_set_dependent_tight.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_set_segment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/sequence_forwards.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_packed_old.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/sequence_interface.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_set_owner.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/sequence_concatenator.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/adapt_array_pointer.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/container_view_zip.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/iter_concat_virtual.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/container_view.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/segment_utils.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/sequence_shortcuts.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/segment_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_set_view.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/segment_infix.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_packed.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/segment_prefix.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_set_dependent_generous.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_set_concat_direct.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/string_set_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/segment_suffix.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence/sequence_lexical.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/roi_io/roi_record.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/roi_io/read_roi.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/roi_io/roi_file.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/roi_io/roi_io_context.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/roi_io/write_roi.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/store.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/file/string_external.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/file/string_mmap.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/file/file_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/file/file_cstyle.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/file/file_interface.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod 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\)` + chmod a-x ./include/seqan/vcf_io/vcf_header_record.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/vcf_io/write_vcf.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/vcf_io/read_vcf.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/vcf_io/vcf_record.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/math.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/consensus/consensus_score.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/consensus/consensus_realign.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/consensus/overlap_info_computation.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/consensus/consensus_aligner.h + for i in `find . -type 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./include/seqan/index/index_device.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/find_index_binary.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/index_bifm.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/shape_minimizer.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/shape_gapped.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/find_backtracking.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/index_sa_stree.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/pump_extender3.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/find2_index_multi.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/index_shawarma.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/find2_backtracking.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/pizzachili_api.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/find_swift.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/pump_lcp_core.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/index_sa_mm.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/index_fm_rank_dictionary_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/find_pigeonhole.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/index_forwards.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/shape_threshold.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/index_qgram.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/index_sa_bwtwalk.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/find2_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/find_index.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/index/index_fm_lf_table.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/realign/realign_helper_functions.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/realign/realign_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_split/align_split_interface.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_split/dp_scout_split.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_msa.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/version.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/ucsc_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/bam_tags_dict.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/bam_alignment_record_util.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/read_bam.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/bam_index_bai.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/bam_scanner_cache.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/bam_file.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/write_sam.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/bam_alignment_record.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/cigar.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/write_bam.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/bam_header_record.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/bam_io_context.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/read_sam.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/bam_io/bam_sam_conversion.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/blast.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/translation/translation_tables.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/translation/translation.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence_journaled/sequence_journaled.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence_journaled/journal_entries_sorted_array.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence_journaled/sequence_journaled_iterator.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence_journaled/journal_entry.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/tabix_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/alignment_free.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/modifier_position.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/modifier_functors.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/modifier_string.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/modifier_alphabet.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/modifier_padding.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/modifier_view.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/modifier_reverse.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/cyclic_shape.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/modifier_alphabet_expansion.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/modifier_shortcuts.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/modifier_cyclic_shape.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/modifier/modifier_iterator.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/parallel.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/tabix_io/tabix_index_tbi.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/score.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/statistics.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/align_parallel.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_msa/graph_align_tcoffee_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_msa/graph_align_tcoffee_guidetree.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_msa/graph_align_tcoffee_distance.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_msa/graph_align_tcoffee_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_msa/graph_align_tcoffee_progressive.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_msa/graph_align_tcoffee_library.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_msa/graph_align_tcoffee_refinement.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_msa/graph_align_tcoffee_msa.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_msa/graph_align_tcoffee_kmer.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/seq_io/read_embl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/seq_io/sequence_file.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/seq_io/read_genbank.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/seq_io/fai_index.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/seq_io/bam_sam.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/seq_io/fasta_fastq.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/seq_io/genomic_region.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_echoer.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_shifter.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_joiner.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_edit_environment.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_filter.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_caster.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_sampler.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_iterator.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_source.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_counter.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_namer.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pool_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pipe_tupler.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pool_sorter.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/pipe/pool_mapper.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/journaled_set/journaled_set_journal_trace_descriptor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/journaled_set/journaled_set_join_global_align_compact.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/journaled_set/journal_alignment_traceback_adaptor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/journaled_set/score_biaffine.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/journaled_set/journaled_set_impl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/journaled_set/journaled_set_join_config.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/journaled_set/journaled_set_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/journaled_set/journaled_set_join.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/journaled_set/journal_alignment_interface.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/journaled_set/journaled_set_join_global_align_manhatten.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/map/sumlist_skip.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/map/map_skiplist.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/map/map_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/map/map_vector.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/map/sumlist_mini.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/map/map_adapter_stl.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/map/sumlist.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/map/map_chooser.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/stream.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/sequence.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/ucsc_io/ucsc_io.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/ucsc_io/ucsc_record.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/ucsc_io/ucsc_file.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/graph_types.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/alignment_free/af_d2.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/alignment_free/af_n2.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/alignment_free/af_d2z.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/alignment_free/alignment_free_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/alignment_free/af_d2star.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/alignment_free/alignment_free_comparison.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/alignment_free/kmer_functions.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_multiple_bfam.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_wild_shiftand.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_begin.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_score.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_bom.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_myers_ukkonen.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_pex.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_abndm.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_bndm.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_lambda.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_shiftor.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_set_horspool.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_pattern_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_simple.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_ahocorasick.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_multi.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_multiple_shiftand.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_wumanber.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_shiftand.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_horspool.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_hamming_simple.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./include/seqan/find/find_base.h + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/blast/blast_in_lowlevel.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/modifier_nested.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/index_supermaxrepeats.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/modifier_modview.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/rooted_iterator.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/annotation_converter.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/index_lcp.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/sample_seqs.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/index_find.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/index_find_stringset.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/iterator.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorials_custim_io/solution1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorials_custim_io/solution4.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorials_custim_io/solution2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorials_custim_io/solution3.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorials_custim_io/example1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/alphabet.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/file_speed.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/file_readwrite.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/soft_to_hard_masking.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/filter_sam.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/bam_print_alignments.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorial_sequence/replace_as.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorial_sequence/count_characters.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/file_format.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/parse_lm_stellar.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/index_node_predicate.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/benchmark_stream_write.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/sam2svg.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/index_qgram_counts.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/bam_library_size.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/modifier_modreverse.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorial_file_io/solution1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorial_file_io/example1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/segmentalignment.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/find_wild.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/arg_align.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/sequence_length.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/bamutil.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/minimapper.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/index_mums.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/gff2gtf.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/graph_hmm_silent.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/seeds.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/benchmark_stream.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/unassigned_or_unused/index_sufarray.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/store/store_example.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/ford_fulkerson_algorithm.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/bellman_ford_algorithm.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/transitive_closure.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/dijkstra.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/depth_first_search.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/topological_sort.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/longest_common_subsequence.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/breadth_first_search.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/all_pairs_shortest_path.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/prims_algorithm.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/floyd_warshall_algorithm.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/kruskals_algorithm.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/heaviest_increasing_subsequence.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/longest_increasing_subsequence.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/strongly_connected_components.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_algorithms/dag_shortest_path.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/seeds/seeds_add_seed.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/seeds/seeds_chaining.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/seeds/seeds_extension.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/parallel/queue_example.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/parallel/splitter_example.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/align_extend/extend_alignment.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/arg_parse/argument_parser.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/gff_io/UNUSED_gff_stream_read.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/basic/simple_type_construction.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/basic/metaprogramming_math.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/basic/zip_iterator.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/basic/metaprogramming_control.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/basic/metaprogramming_switch.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/basic/enable_if.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/basic/metaprogramming_logic.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/align_profile/profile_seq_score.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/align_profile/profile_seq_frac_score.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/align/global_alignment_unbanded.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/align/compute_alignment_stats.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/align/align.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/align/integrate_align.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/align/global_alignment_banded.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/align/gaps_example.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/stream/lexical_cast.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/misc/name_store_cache.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/misc/interval_tree_example.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/misc/get_terminal_size.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/misc/enumerate_strings.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_align/graph_align.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/sequence/container_view_zip.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/sequence/UNUSED_infix.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/sequence/string2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/sequence/UNUSED_suffix.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/sequence/stringset.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/sequence/UNUSED_prefix.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/sequence/string.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/sequence/segment.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/statistics/load_markov_model.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/statistics/build_markov_model.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/consensus/consensus_alignment.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/score/score.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/bed_io/UNUSED_bed_stream_read.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/graph_types/graph_algo_dijkstra.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/shape_hash_init.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/textAt_indexText_saAt_indexRequire.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/iterator.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/length_countSequences.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/supermaxrepeats.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/begin_range_goDown_representative_repLength.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/UNUSED_shape.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/UNUSED_shape_hash.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/UNUSED_shape_hash_next.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/open_save.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/iterator_short.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/begin_atEnd_representative.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/finder.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/counting.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/maxrepeats.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/mummy.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/find_repeats.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/sufarray.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/mums.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/dox/index/node_predicate.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + 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-name "*.cpp" \)` + chmod a-x ./demos/tutorial/graph/graph_hmm.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/graph/graph_dijkstra.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/vcf_io/solution1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/vcf_io/solution2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/vcf_io/solution3.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/vcf_io/example1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/vcf_io/base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x 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./demos/tutorial/sequences_in_depth/base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/string_sets/assignment_1_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/string_sets/example_functionality_2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/string_sets/assignment_2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/string_sets/assignment_2_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/string_sets/example_iterators.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/string_sets/example_functionality.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/string_sets/assignment_4_workshop_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/string_sets/assignment_3_workshop_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/string_sets/base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/indices/assignment_2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/indices/assignment_1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/indices/find2_index_approx.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/indices/fm_index.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/indices/base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/modifiers/assignment1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/modifiers/UNUSED_modcomplementdna.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/modifiers/modreverse.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/modifiers/nested.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/modifiers/modview.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/modifiers/assignment1_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/iterators/assignment_1_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/iterators/sequence_iterator_demo.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/iterators/assignment_2_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/iterators/assignment_1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/iterators/assignment_4_workshop_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/iterators/assignment_3_workshop_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/iterators/assignment_3_workshop.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/iterators/base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/example_conversions_copy.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/assignment_1_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/assignment_4_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/example_functionality1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/assignment_6_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/example_conversions_move.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/assignment_2_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/assignment_3_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/example_functionality2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/assignment_5_solution.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/example_segments.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/assignment_3.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/example_comparisons.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequences/base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/example6.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/solution1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/solution4.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/example2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/example7.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/solution2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/solution3.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/example1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/example3.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/solution6.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/example4.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/example5.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/seed_and_extend/solution5.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/multiple_sequence_alignment/assignment1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/multiple_sequence_alignment/msa.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/multiple_sequence_alignment/consensus.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/alignment_banded.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/assignment5.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequence_io/solution1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequence_io/solution4.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequence_io/solution2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequence_io/solution3.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequence_io/example1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/sequence_io/base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/journaled_set/solution_online_search_assignment4.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/journaled_set/solution_online_search_finder.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/journaled_set/example_join.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/journaled_set/solution_online_search_assignment3.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/journaled_set/example_journal_string_basic.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/journaled_set/solution_online_search_assignment2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/journaled_set/solution_online_search_assignment1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/journaled_set/example_online_search.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/journaled_set/base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/indexed_fasta_io/solution1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/indexed_fasta_io/solution2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/indexed_fasta_io/base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/genequant_solution5.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/genequant_assignment1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/genequant_solution4.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/genequant_assignment4.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/interval_tree.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/genequant_solution1.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/genequant_assignment2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/genequant_solution2.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/genequant_assignment5.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/genequant_solution3.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/genequant_assignment3.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tutorial/simple_rna_seq/base.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/tabix_io/tabix_vcf.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/howto/filter_similar_sequences.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/howto/efficiently_import_sequences.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/howto/custom_file_endings.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/howto/scores/load_score.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/howto/scores/init_score.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/howto/using_zip_iterator.cpp + for i in `find . -type f \( -name "*.h" -o -name "*.cpp" \)` + chmod a-x ./demos/howto/align_gaps_clipping.cpp BUILDSTDERR: ++ ls apps/ BUILDSTDERR: ++ grep -v CMakeLists + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/alf/LICENSE apps/alf/alf-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/bs_tools/LICENSE apps/bs_tools/bs_tools-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/dfi/LICENSE apps/dfi/dfi-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/fiona/LICENSE apps/fiona/fiona-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/fx_tools/LICENSE apps/fx_tools/fx_tools-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/gustaf/LICENSE apps/gustaf/gustaf-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/insegt/LICENSE apps/insegt/insegt-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/mason2/LICENSE apps/mason2/mason2-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/micro_razers/LICENSE apps/micro_razers/micro_razers-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/ngs_roi/LICENSE apps/ngs_roi/ngs_roi-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/pair_align/LICENSE apps/pair_align/pair_align-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/param_chooser/LICENSE apps/param_chooser/param_chooser-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/rabema/LICENSE apps/rabema/rabema-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/razers/LICENSE apps/razers/razers-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/razers3/LICENSE apps/razers3/razers3-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/rep_sep/LICENSE apps/rep_sep/rep_sep-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/sak/LICENSE apps/sak/sak-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/sam2matrix/LICENSE apps/sam2matrix/sam2matrix-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/samcat/LICENSE apps/samcat/samcat-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/searchjoin/LICENSE apps/searchjoin/searchjoin-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/seqan_tcoffee/LICENSE apps/seqan_tcoffee/seqan_tcoffee-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/seqcons2/LICENSE apps/seqcons2/seqcons2-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/sgip/LICENSE apps/sgip/sgip-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/snp_store/LICENSE apps/snp_store/snp_store-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/splazers/LICENSE apps/splazers/splazers-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/stellar/LICENSE apps/stellar/stellar-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/tree_recon/LICENSE apps/tree_recon/tree_recon-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/yara/LICENSE apps/yara/yara-LICENSE + cp -p apps/rabema/COPYING apps/rabema/rabema-COPYING + rm -rf util/py_lib/seqan/dox/tpl/lib/font-awesome/css util/py_lib/seqan/dox/tpl/lib/font-awesome/fonts util/py_lib/seqan/dox/tpl/lib/font-awesome/less util/py_lib/seqan/dox/tpl/lib/font-awesome/scss + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YGJjGE + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + mkdir -p build/library + pushd build/library ~/build/BUILD/seqan-seqan-v2.4.0/build/library ~/build/BUILD/seqan-seqan-v2.4.0 + SEQAN_OPT_FLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now' + export 'LDFLAGS=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/seqan2 -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/seqan2 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DSEQAN_BUILD_SYSTEM:STRING=SEQAN_RELEASE_LIBRARY -DSEQAN_DISABLE_VERSION_CHECK:BOOL=ON -DZLIB_INCLUDE_DIR:PATH=/usr/include -DZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -DBZIP2_INCLUDE_DIR:PATH=/usr/include -DBZIP2_LIBRARY:FILEPATH=/usr/lib64/libbz2.so -DLEMON_INCLUDE_DIR:PATH=/usr/include -DLEMON_LIBRARY:FILEPATH=/usr/lib64/libemon.so -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 -DSPHINX_EXECUTABLE:FILEPATH=/usr/bin/sphinx-build -DSPHINX_MAN_OUTPUT:BOOL=ON -DSPHINX_TEXT_OUTPUT:BOOL=ON -DYARA_LARGE_CONTIGS:BOOL=OFF ../.. -- The CXX compiler identification is GNU 8.1.1 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- Selected repository dir: /builddir/build/BUILD/seqan-seqan-v2.4.0 -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring dox -- Found PythonInterp: /usr/bin/python2 (found suitable version "2.7.15", minimum required is "2.7") -- Configuring done -- Generating done BUILDSTDERR: CMake Warning: BUILDSTDERR: Manually-specified variables were not used by the project: BUILDSTDERR: BUILD_SHARED_LIBS BUILDSTDERR: BZIP2_INCLUDE_DIR BUILDSTDERR: BZIP2_LIBRARY BUILDSTDERR: Boost_INCLUDE_DIR BUILDSTDERR: CMAKE_CXX_FLAGS_RELEASE BUILDSTDERR: CMAKE_C_FLAGS_RELEASE BUILDSTDERR: CMAKE_Fortran_FLAGS_RELEASE BUILDSTDERR: CMAKE_SKIP_INSTALL_RPATH BUILDSTDERR: CMAKE_SKIP_RPATH BUILDSTDERR: INCLUDE_INSTALL_DIR BUILDSTDERR: LEMON_INCLUDE_DIR BUILDSTDERR: LEMON_LIBRARY BUILDSTDERR: LIB_INSTALL_DIR BUILDSTDERR: LIB_SUFFIX BUILDSTDERR: SPHINX_EXECUTABLE BUILDSTDERR: SPHINX_MAN_OUTPUT BUILDSTDERR: SPHINX_TEXT_OUTPUT BUILDSTDERR: YARA_LARGE_CONTIGS BUILDSTDERR: ZLIB_INCLUDE_DIR BUILDSTDERR: ZLIB_LIBRARY -- Build files have been written to: /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library + /usr/bin/make -O -j4 /usr/bin/cmake -H/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f dox/CMakeFiles/dox.dir/build.make dox/CMakeFiles/dox.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/dox /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/CMakeFiles/dox.dir/DependInfo.cmake --color= Scanning dependencies of target dox make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' /usr/bin/make -f dox/CMakeFiles/dox.dir/build.make dox/CMakeFiles/dox.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox && cd /builddir/build/BUILD/seqan-seqan-v2.4.0/dox && /usr/bin/python2 /builddir/build/BUILD/seqan-seqan-v2.4.0/dox/../util/bin/dox.py -b /builddir/build/BUILD/seqan-seqan-v2.4.0/dox/.. -i /builddir/build/BUILD/seqan-seqan-v2.4.0/dox/../include/seqan -i /builddir/build/BUILD/seqan-seqan-v2.4.0/dox/pages --image-dir /builddir/build/BUILD/seqan-seqan-v2.4.0/dox/images --out-dir /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' BUILDSTDERR: Could not load cache dddoc_cache.bin BUILDSTDERR: Processing Documentation... BUILDSTDERR: 1) Converting Top-Level Entries. BUILDSTDERR: 2) Converting Second-Level Entries. BUILDSTDERR: 3) Converting variable and enum value entries. BUILDSTDERR: 3) Checking References. BUILDSTDERR: 4) Building Inheritance Lists. BUILDSTDERR: 5) Running validation. BUILDSTDERR: Generating HTML documentation BUILDSTDERR: Output Directory: /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html BUILDSTDERR: Copying /builddir/build/BUILD/seqan-seqan-v2.4.0/util/py_lib/seqan/dox/tpl/css => /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html/css BUILDSTDERR: Copying /builddir/build/BUILD/seqan-seqan-v2.4.0/util/py_lib/seqan/dox/tpl/js => /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html/js BUILDSTDERR: Copying /builddir/build/BUILD/seqan-seqan-v2.4.0/util/py_lib/seqan/dox/tpl/img => /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html/img BUILDSTDERR: Copying /builddir/build/BUILD/seqan-seqan-v2.4.0/util/py_lib/seqan/dox/tpl/lib => /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html/lib BUILDSTDERR: Issued 0 warnings and 0 errors. make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' Built target dox make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles 0 ~/build/BUILD/seqan-seqan-v2.4.0 + popd + mkdir -p build/Release + pushd build/Release ~/build/BUILD/seqan-seqan-v2.4.0/build/Release ~/build/BUILD/seqan-seqan-v2.4.0 + SEQAN_OPT_FLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now' + export 'LDFLAGS=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/seqan2 -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/seqan2 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DSEQAN_BUILD_SYSTEM:STRING=SEQAN_RELEASE_APPS -DSEQAN_DISABLE_VERSION_CHECK:BOOL=ON -DZLIB_INCLUDE_DIR:PATH=/usr/include -DZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -DBZIP2_INCLUDE_DIR:PATH=/usr/include -DBZIP2_LIBRARY:FILEPATH=/usr/lib64/libbz2.so -DLEMON_INCLUDE_DIR:PATH=/usr/include -DLEMON_LIBRARY:FILEPATH=/usr/lib64/libemon.so -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 -DYARA_LARGE_CONTIGS:BOOL=OFF -DSPHINX_EXECUTABLE:FILEPATH=/usr/bin/sphinx-build -DSPHINX_MAN_OUTPUT:BOOL=ON -DSPHINX_TEXT_OUTPUT:BOOL=ON ../.. -- The CXX compiler identification is GNU 8.1.1 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- Selected repository dir: /builddir/build/BUILD/seqan-seqan-v2.4.0 -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring apps -- Configuring apps/alf -- Performing Test CXX14_BUILTIN -- Performing Test CXX14_BUILTIN - Success -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/bs_tools -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") -- Boost version: 1.66.0 -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Found PythonInterp: /usr/bin/python2 (found suitable version "2.7.15", minimum required is "2.7") -- Configuring apps/dfi -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/fiona -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Boost version: 1.66.0 -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/fx_tools -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/gustaf -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/insegt -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/mason2 -- Found OpenMP_CXX: -fopenmp -- Found OpenMP: TRUE -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/micro_razers -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/ngs_roi -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/pair_align -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/param_chooser -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/rabema -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/razers -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/razers3 -- Found BZip2: /usr/lib64/libbz2.so (found version "1.0.6") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/rep_sep -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/sak -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/sam2matrix -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/samcat -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/searchjoin -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/seqan_tcoffee -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/seqcons2 -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/sgip -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/snp_store -- Boost version: 1.66.0 -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/splazers -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/stellar -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/tree_recon -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/yara -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring done -- Generating done BUILDSTDERR: CMake Warning: BUILDSTDERR: Manually-specified variables were not used by the project: BUILDSTDERR: CMAKE_C_FLAGS_RELEASE BUILDSTDERR: CMAKE_Fortran_FLAGS_RELEASE BUILDSTDERR: CMAKE_SKIP_INSTALL_RPATH BUILDSTDERR: INCLUDE_INSTALL_DIR BUILDSTDERR: LEMON_INCLUDE_DIR BUILDSTDERR: LEMON_LIBRARY BUILDSTDERR: LIB_INSTALL_DIR BUILDSTDERR: LIB_SUFFIX BUILDSTDERR: SPHINX_EXECUTABLE BUILDSTDERR: SPHINX_MAN_OUTPUT BUILDSTDERR: SPHINX_TEXT_OUTPUT -- Build files have been written to: /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release + make -O -j1 /usr/bin/cmake -H/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles/seqan_library.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_library make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 0%] Built target seqan_library make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= Scanning dependencies of target alf make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 0%] Building CXX object apps/alf/CMakeFiles/alf.dir/alf.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/alf.dir/alf.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp [ 0%] Linking CXX executable ../../bin/alf cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/alf.dir/alf.cpp.o -o ../../bin/alf -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 0%] Built target alf make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= Scanning dependencies of target casbar make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 0%] Building CXX object apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/casbar.dir/casbar.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp [ 1%] Linking CXX executable ../../bin/casbar cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o -o ../../bin/casbar -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 1%] Built target casbar make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= Scanning dependencies of target bisar make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 1%] Building CXX object apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/bisar.dir/bisar.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp [ 3%] Linking CXX executable ../../bin/bisar cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o -o ../../bin/bisar -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 3%] Built target bisar make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= Scanning dependencies of target four2three make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Building CXX object apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/four2three.dir/four2three.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp [ 4%] Linking CXX executable ../../bin/four2three cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o -o ../../bin/four2three -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Built target four2three make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= Scanning dependencies of target dfi make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Building CXX object apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/dfi.dir/dfi.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp [ 4%] Linking CXX executable ../../bin/dfi cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o -o ../../bin/dfi -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Built target dfi make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= Scanning dependencies of target fiona make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 6%] Building CXX object apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/fiona.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp [ 6%] Linking CXX executable ../../bin/fiona cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o -o ../../bin/fiona -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 6%] Built target fiona make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= Scanning dependencies of target compute_gain make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 6%] Building CXX object apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp [ 7%] Linking CXX executable ../../bin/compute_gain cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/compute_gain.dir/compute_gain.cpp.o -o ../../bin/compute_gain -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 7%] Built target compute_gain make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= Scanning dependencies of target fiona_illumina make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 9%] Building CXX object apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/c++ -DFIONA_ILLUMINA -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp [ 9%] Linking CXX executable ../../bin/fiona_illumina cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../bin/fiona_illumina -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 9%] Built target fiona_illumina make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= Scanning dependencies of target fx_fastq_stats make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 10%] Building CXX object apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp [ 10%] Linking CXX executable ../../bin/fx_fastq_stats cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../bin/fx_fastq_stats -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 10%] Built target fx_fastq_stats make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= Scanning dependencies of target fx_bam_coverage make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 12%] Building CXX object apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp [ 12%] Linking CXX executable ../../bin/fx_bam_coverage cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../bin/fx_bam_coverage -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 12%] Built target fx_bam_coverage make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/DependInfo.cmake --color= Scanning dependencies of target gustaf_mate_joining make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 12%] Building CXX object apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp [ 14%] Linking CXX executable ../../bin/gustaf_mate_joining cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf_mate_joining.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -o ../../bin/gustaf_mate_joining -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 14%] Built target gustaf_mate_joining make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= Scanning dependencies of target gustaf make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 14%] Building CXX object apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf.cpp [ 15%] Linking CXX executable ../../bin/gustaf cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../bin/gustaf -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 15%] Built target gustaf make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= Scanning dependencies of target insegt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 15%] Building CXX object apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/insegt.dir/insegt.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp [ 17%] Linking CXX executable ../../bin/insegt cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../bin/insegt -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 17%] Built target insegt make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= Scanning dependencies of target mason_sim make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 18%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp [ 18%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.cpp [ 20%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.cpp [ 20%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.cpp [ 21%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_454.cpp [ 21%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_base.cpp [ 23%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp [ 23%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp [ 25%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp [ 25%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.cpp [ 25%] Linking CXX static library libmason_sim.a cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 /usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o /usr/bin/ranlib libmason_sim.a make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 25%] Built target mason_sim make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= Scanning dependencies of target mason_materializer make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 25%] Building CXX object apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp [ 25%] Linking CXX executable ../../bin/mason_materializer cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../bin/mason_materializer -lrt -lz libmason_sim.a -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 25%] Built target mason_materializer make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= Scanning dependencies of target mason_methylation make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 26%] Building CXX object apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp [ 26%] Linking CXX executable ../../bin/mason_methylation cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../bin/mason_methylation -lrt -lz libmason_sim.a -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 26%] Built target mason_methylation make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= Scanning dependencies of target mason_simulator make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 28%] Building CXX object apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp [ 28%] Linking CXX executable ../../bin/mason_simulator cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../bin/mason_simulator -lrt -lz libmason_sim.a -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 28%] Built target mason_simulator make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= Scanning dependencies of target mason_splicing make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 29%] Building CXX object apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp [ 29%] Linking CXX executable ../../bin/mason_splicing cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../bin/mason_splicing -lrt -lz libmason_sim.a -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 29%] Built target mason_splicing make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= Scanning dependencies of target mason_frag_sequencing make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 29%] Building CXX object apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp [ 31%] Linking CXX executable ../../bin/mason_frag_sequencing cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../bin/mason_frag_sequencing -lrt -lz libmason_sim.a -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 31%] Built target mason_frag_sequencing make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= Scanning dependencies of target mason_variator make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 32%] Building CXX object apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp [ 32%] Linking CXX executable ../../bin/mason_variator cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../bin/mason_variator -lrt -lz libmason_sim.a -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 32%] Built target mason_variator make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= Scanning dependencies of target mason_genome make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 32%] Building CXX object apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp [ 34%] Linking CXX executable ../../bin/mason_genome cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../bin/mason_genome -lrt -lz libmason_sim.a -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 34%] Built target mason_genome make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= Scanning dependencies of target mason_tests make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 35%] Building CXX object apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_tests.cpp [ 35%] Linking CXX executable ../../bin/mason_tests cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../bin/mason_tests -lrt -lz libmason_sim.a -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 35%] Built target mason_tests make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= Scanning dependencies of target micro_razers make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 37%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp [ 37%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/param_tabs.cpp [ 37%] Linking CXX executable ../../bin/micro_razers cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../bin/micro_razers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 37%] Built target micro_razers make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= Scanning dependencies of target bam2roi make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 39%] Building CXX object apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp [ 39%] Building CXX object apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.cpp [ 40%] Linking CXX executable ../../bin/bam2roi cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../bin/bam2roi -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 40%] Built target bam2roi make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= Scanning dependencies of target roi_plot_thumbnails make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 42%] Building CXX object apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp [ 42%] Linking CXX executable ../../bin/roi_plot_thumbnails cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../bin/roi_plot_thumbnails -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 42%] Built target roi_plot_thumbnails make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= Scanning dependencies of target roi_feature_projection make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 43%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp [ 43%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_spliced.cpp [ 45%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.cpp [ 45%] Linking CXX executable ../../bin/roi_feature_projection cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../bin/roi_feature_projection -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 45%] Built target roi_feature_projection make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1001 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Built target pair_align_global_1001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1100 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Built target pair_align_global_1100 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0000 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 48%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 48%] Built target pair_align_global_0000 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0010 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_global_0010 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0001 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_global_0001 make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_local make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_local make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1110 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_global_1110 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1011 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_global_1011 make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_lcs make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_lcs make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0101 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_global_0101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0011 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_global_0011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0100 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Built target pair_align_global_0100 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1111 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 54%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 54%] Built target pair_align_global_1111 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0110 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Built target pair_align_global_0110 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1010 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Built target pair_align_global_1010 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0111 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Built target pair_align_global_0111 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1101 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Built target pair_align_global_1101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1000 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Built target pair_align_global_1000 make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_lib make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 59%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.cpp [ 59%] Linking CXX static library libpair_align_lib.a cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/cmake -P CMakeFiles/pair_align_lib.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align_lib.dir/link.txt --verbose=1 /usr/bin/ar qc libpair_align_lib.a CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o /usr/bin/ranlib libpair_align_lib.a make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 59%] Built target pair_align_lib make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 60%] Building CXX object apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/pair_align.cpp [ 60%] Linking CXX executable ../../bin/pair_align cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../bin/pair_align lib/libpair_align_lib.a -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 60%] Built target pair_align make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= Scanning dependencies of target param_chooser make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 62%] Building CXX object apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp [ 62%] Linking CXX executable ../../bin/param_chooser cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../bin/param_chooser -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 62%] Built target param_chooser make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= Scanning dependencies of target test_funcs_param_chooser make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 62%] Building CXX object apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/test_param_chooser.cpp [ 64%] Linking CXX executable ../../bin/test_funcs_param_chooser cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../bin/test_funcs_param_chooser -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 64%] Built target test_funcs_param_chooser make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_build_gold_standard make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 65%] Building CXX object apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp [ 65%] Linking CXX executable ../../bin/rabema_build_gold_standard cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../bin/rabema_build_gold_standard -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 65%] Built target rabema_build_gold_standard make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_prepare_sam make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 65%] Building CXX object apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/prepare_sam.cpp [ 67%] Linking CXX executable ../../bin/rabema_prepare_sam cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../bin/rabema_prepare_sam -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 67%] Built target rabema_prepare_sam make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_evaluate make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 67%] Building CXX object apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp [ 68%] Linking CXX executable ../../bin/rabema_evaluate cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../bin/rabema_evaluate -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 68%] Built target rabema_evaluate make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_do_search make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 68%] Building CXX object apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp [ 70%] Linking CXX executable ../../bin/rabema_do_search cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../bin/rabema_do_search -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 70%] Built target rabema_do_search make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= Scanning dependencies of target razers make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 70%] Building CXX object apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp [ 71%] Building CXX object apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/param_tabs.cpp [ 71%] Linking CXX executable ../../bin/razers cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../bin/razers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 71%] Built target razers make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= Scanning dependencies of target razers3_simulate_reads make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 73%] Building CXX object apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp [ 73%] Linking CXX executable ../../bin/razers3_simulate_reads cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../bin/razers3_simulate_reads -lrt -lz -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 73%] Built target razers3_simulate_reads make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= Scanning dependencies of target razers3 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 75%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp [ 75%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/param_tabs.cpp [ 75%] Linking CXX executable ../../bin/razers3 cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../bin/razers3 -lrt -lz -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 75%] Built target razers3 make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= Scanning dependencies of target razers3_quality2prob make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 76%] Building CXX object apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp [ 76%] Linking CXX executable ../../bin/razers3_quality2prob cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../bin/razers3_quality2prob -lrt -lz -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 76%] Built target razers3_quality2prob make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= Scanning dependencies of target rep_sep make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 78%] Building CXX object apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp [ 78%] Linking CXX executable ../../bin/rep_sep cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../bin/rep_sep -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 78%] Built target rep_sep make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= Scanning dependencies of target sak make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 78%] Building CXX object apps/sak/CMakeFiles/sak.dir/sak.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sak.dir/sak.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp [ 79%] Linking CXX executable ../../bin/sak cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../bin/sak -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 79%] Built target sak make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= Scanning dependencies of target sam2matrix make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 79%] Building CXX object apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp [ 81%] Linking CXX executable ../../bin/sam2matrix cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../bin/sam2matrix -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Built target sam2matrix make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= Scanning dependencies of target samcat make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Building CXX object apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/samcat.dir/samcat.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat/samcat.cpp [ 81%] Linking CXX executable ../../bin/samcat cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../bin/samcat -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Built target samcat make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake --color= Scanning dependencies of target s4_join make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Building CXX object apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/s4_join.dir/join.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp [ 82%] Linking CXX executable ../../bin/s4_join cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_join.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_join.dir/join.cpp.o -o ../../bin/s4_join -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 82%] Built target s4_join make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake --color= Scanning dependencies of target s4_search make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 82%] Building CXX object apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/s4_search.dir/search.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp [ 84%] Linking CXX executable ../../bin/s4_search cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_search.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_search.dir/search.cpp.o -o ../../bin/s4_search -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 84%] Built target s4_search make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_tcoffee make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 85%] Building CXX object apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.13.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp [ 85%] Linking CXX executable ../../bin/seqan_tcoffee cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../bin/seqan_tcoffee -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 85%] Built target seqan_tcoffee make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake --color= Scanning dependencies of target seqcons2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 87%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqcons2.dir/seqcons.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons.cpp [ 87%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp [ 89%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_options.cpp [ 89%] Linking CXX executable ../../bin/seqcons2 cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons2.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqcons2.dir/seqcons.cpp.o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -o ../../bin/seqcons2 -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 89%] Built target seqcons2 make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= Scanning dependencies of target sgip make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 90%] Building CXX object apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sgip.dir/sgip.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.cpp [ 90%] Linking CXX executable ../../bin/sgip cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../bin/sgip -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 90%] Built target sgip make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= Scanning dependencies of target snp_store make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 92%] Building CXX object apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp [ 92%] Linking CXX executable ../../bin/snp_store cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../bin/snp_store -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 92%] Built target snp_store make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= Scanning dependencies of target splazers make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 92%] Building CXX object apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/splazers.dir/splazers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp [ 93%] Linking CXX executable ../../bin/splazers cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../bin/splazers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 93%] Built target splazers make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= Scanning dependencies of target stellar make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 93%] Building CXX object apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/stellar.dir/stellar.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp [ 95%] Linking CXX executable ../../bin/stellar cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../bin/stellar -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 95%] Built target stellar make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= Scanning dependencies of target tree_recon make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 95%] Building CXX object apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon.cpp [ 96%] Linking CXX executable ../../bin/tree_recon cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../bin/tree_recon -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 96%] Built target tree_recon make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake --color= Scanning dependencies of target yara_mapper make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 96%] Building CXX object apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/yara_mapper.dir/mapper.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp [ 98%] Linking CXX executable ../../bin/yara_mapper cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_mapper.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_mapper.dir/mapper.cpp.o -o ../../bin/yara_mapper -lrt -lz -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 98%] Built target yara_mapper make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake --color= Scanning dependencies of target yara_indexer make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 98%] Building CXX object apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/yara_indexer.dir/indexer.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp [100%] Linking CXX executable ../../bin/yara_indexer cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_indexer.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -pedantic -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_indexer.dir/indexer.cpp.o -o ../../bin/yara_indexer -lrt -lz -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [100%] Built target yara_indexer make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles 0 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.N6T7r6 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64 + cd seqan-seqan-v2.4.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64 'INSTALL=/usr/bin/install -p' -C build/library make: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' /usr/bin/cmake -H/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' /usr/bin/make -f dox/CMakeFiles/dox.dir/build.make dox/CMakeFiles/dox.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/dox /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/CMakeFiles/dox.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' /usr/bin/make -f dox/CMakeFiles/dox.dir/build.make dox/CMakeFiles/dox.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox && cd /builddir/build/BUILD/seqan-seqan-v2.4.0/dox && /usr/bin/python2 /builddir/build/BUILD/seqan-seqan-v2.4.0/dox/../util/bin/dox.py -b /builddir/build/BUILD/seqan-seqan-v2.4.0/dox/.. -i /builddir/build/BUILD/seqan-seqan-v2.4.0/dox/../include/seqan -i /builddir/build/BUILD/seqan-seqan-v2.4.0/dox/pages --image-dir /builddir/build/BUILD/seqan-seqan-v2.4.0/dox/images --out-dir /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html BUILDSTDERR: Could not load cache dddoc_cache.bin BUILDSTDERR: Processing Documentation... BUILDSTDERR: 1) Converting Top-Level Entries. BUILDSTDERR: 2) Converting Second-Level Entries. BUILDSTDERR: 3) Converting variable and enum value entries. BUILDSTDERR: 3) Checking References. BUILDSTDERR: 4) Building Inheritance Lists. BUILDSTDERR: 5) Running validation. BUILDSTDERR: Generating HTML documentation BUILDSTDERR: Output Directory: /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html BUILDSTDERR: Copying /builddir/build/BUILD/seqan-seqan-v2.4.0/util/py_lib/seqan/dox/tpl/css => /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html/css BUILDSTDERR: Copying /builddir/build/BUILD/seqan-seqan-v2.4.0/util/py_lib/seqan/dox/tpl/js => /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html/js BUILDSTDERR: Copying /builddir/build/BUILD/seqan-seqan-v2.4.0/util/py_lib/seqan/dox/tpl/img => /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html/img BUILDSTDERR: Copying /builddir/build/BUILD/seqan-seqan-v2.4.0/util/py_lib/seqan/dox/tpl/lib => /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/dox/html/lib BUILDSTDERR: Issued 0 warnings and 0 errors. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' Built target dox make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2/README.rst -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2/CHANGELOG.rst -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/lib64/pkgconfig/seqan-2.pc -- Installing: 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/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/bs_tools/CMakeFiles/bisar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 3%] Built target bisar /usr/bin/make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/bs_tools/CMakeFiles/four2three.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Built target four2three /usr/bin/make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/dfi/CMakeFiles/dfi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Built target dfi /usr/bin/make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/fiona/CMakeFiles/fiona.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 6%] Built target fiona /usr/bin/make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/fiona/CMakeFiles/compute_gain.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 7%] Built target compute_gain /usr/bin/make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/fiona/CMakeFiles/fiona_illumina.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 9%] Built target fiona_illumina /usr/bin/make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 10%] Built target fx_fastq_stats /usr/bin/make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 12%] Built target fx_bam_coverage /usr/bin/make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 14%] Built target gustaf_mate_joining /usr/bin/make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 15%] Built target gustaf /usr/bin/make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/insegt/CMakeFiles/insegt.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 17%] Built target insegt /usr/bin/make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_sim.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 25%] Built target mason_sim /usr/bin/make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_materializer.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 25%] Built target mason_materializer /usr/bin/make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_methylation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 26%] Built target mason_methylation /usr/bin/make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_simulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 28%] Built target mason_simulator /usr/bin/make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_splicing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 29%] Built target mason_splicing /usr/bin/make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 31%] Built target mason_frag_sequencing /usr/bin/make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_variator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 32%] Built target mason_variator /usr/bin/make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_genome.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 34%] Built target mason_genome /usr/bin/make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_tests.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 35%] Built target mason_tests /usr/bin/make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/micro_razers/CMakeFiles/micro_razers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 37%] Built target micro_razers /usr/bin/make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/bam2roi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 40%] Built target bam2roi /usr/bin/make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 42%] Built target roi_plot_thumbnails /usr/bin/make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 45%] Built target roi_feature_projection /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Built target pair_align_global_1001 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Built target pair_align_global_1100 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 48%] Built target pair_align_global_0000 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_global_0010 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_global_0001 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_local /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_global_1110 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_global_1011 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_lcs /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_global_0101 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_global_0011 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Built target pair_align_global_0100 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 54%] Built target pair_align_global_1111 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Built target pair_align_global_0110 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Built target pair_align_global_1010 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Built target pair_align_global_0111 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Built target pair_align_global_1101 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Built target pair_align_global_1000 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 59%] Built target pair_align_lib /usr/bin/make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/CMakeFiles/pair_align.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 60%] Built target pair_align /usr/bin/make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/param_chooser/CMakeFiles/param_chooser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 62%] Built target param_chooser /usr/bin/make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 64%] Built target test_funcs_param_chooser /usr/bin/make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 65%] Built target rabema_build_gold_standard /usr/bin/make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 67%] Built target rabema_prepare_sam /usr/bin/make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_evaluate.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 68%] Built target rabema_evaluate /usr/bin/make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_do_search.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 70%] Built target rabema_do_search /usr/bin/make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/razers/CMakeFiles/razers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 71%] Built target razers /usr/bin/make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 73%] Built target razers3_simulate_reads /usr/bin/make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 75%] Built target razers3 /usr/bin/make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 76%] Built target razers3_quality2prob /usr/bin/make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/rep_sep/CMakeFiles/rep_sep.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 78%] Built target rep_sep /usr/bin/make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/sak/CMakeFiles/sak.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 79%] Built target sak /usr/bin/make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Built target sam2matrix /usr/bin/make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/samcat/CMakeFiles/samcat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Built target samcat /usr/bin/make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_join.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 82%] Built target s4_join /usr/bin/make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_search.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 84%] Built target s4_search /usr/bin/make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 85%] Built target seqan_tcoffee /usr/bin/make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/seqcons2/CMakeFiles/seqcons2.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 89%] Built target seqcons2 /usr/bin/make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/sgip/CMakeFiles/sgip.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 90%] Built target sgip /usr/bin/make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/snp_store/CMakeFiles/snp_store.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 92%] Built target snp_store /usr/bin/make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/splazers/CMakeFiles/splazers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 93%] Built target splazers /usr/bin/make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/stellar/CMakeFiles/stellar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 95%] Built target stellar /usr/bin/make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/tree_recon/CMakeFiles/tree_recon.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 96%] Built target tree_recon /usr/bin/make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/yara/CMakeFiles/yara_mapper.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 98%] Built target yara_mapper /usr/bin/make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/yara/CMakeFiles/yara_indexer.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [100%] Built target yara_indexer make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/alf -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/libexec/seqan2/examples/alf/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/libexec/seqan2/examples/alf/README -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/libexec/seqan2/examples/alf/example/small.fasta -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/bisar -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/casbar -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/four2three -- Installing: 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/builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/param_chooser /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/rabema_build_gold_standard /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/rabema_evaluate /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/rabema_prepare_sam /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/razers /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/razers3 /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/rep_sep /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/roi_feature_projection /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/roi_plot_9.sh /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/roi_plot_thumbnails /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/roi_sort.sh /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/s4_join /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/s4_search /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/sak /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/sam2matrix /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/samcat /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/seqan_tcoffee /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/seqcons2 /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/sgip /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/snp_store /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/splazers /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/stellar /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/tree_recon /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/yara_indexer /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/yara_mapper + ln -s /usr/share/seqan2/pdf_plot_helper/plot.awk /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/plot.awk + ln -s /usr/share/seqan2/pdf_plot_helper/ps2pswLinks.gawk /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/ps2pswLinks.gawk + rm -rf /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/libexec/seqan2/examples/ngs_roi/R + rm -f /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2/LICENSE + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 2.4.0-3.fc29 --unique-debug-suffix -2.4.0-3.fc29.riscv64 --unique-debug-src-base seqan2-2.4.0-3.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/seqan-seqan-v2.4.0 extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/rep_sep extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/seqan_tcoffee extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/casbar extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/compute_gain extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/rabema_evaluate extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/razers extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/sam2matrix extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/param_chooser extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/gustaf extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/fx_bam_coverage extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/snp_store extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/mason_simulator extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/splazers extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/rabema_prepare_sam extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/mason_genome extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/bisar extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/rabema_build_gold_standard extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/mason_variator extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/fiona extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/razers3 extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/seqcons2 extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/mason_methylation extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/tree_recon extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/s4_search extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/mason_frag_sequencing extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/stellar extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/bam2roi extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/sak extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/four2three extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/insegt extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/micro_razers extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/pair_align extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/alf extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/sgip extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/mason_materializer extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/gustaf_mate_joining extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/roi_plot_thumbnails extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/yara_mapper extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/yara_indexer extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/samcat extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/dfi extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/roi_feature_projection extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/mason_splicing extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/bin/s4_join /usr/lib/rpm/sepdebugcrcfix: Updated 44 CRC32s, 0 CRC32s did match. BUILDSTDERR: 23509 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.rMsQYq Processing files: seqan2-apps-2.4.0-3.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.5n19jM + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + DOCDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-apps + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-apps + cp -pr README.rst /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-apps + cp -pr CHANGELOG.rst /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-apps + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ZLIlKa + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + LICENSEDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/licenses/seqan2-apps + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/licenses/seqan2-apps + cp -pr LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/licenses/seqan2-apps + cp -pr apps/alf/alf-LICENSE apps/bs_tools/bs_tools-LICENSE apps/dfi/dfi-LICENSE apps/fiona/fiona-LICENSE apps/fx_tools/fx_tools-LICENSE apps/gustaf/gustaf-LICENSE apps/insegt/insegt-LICENSE apps/mason2/mason2-LICENSE apps/micro_razers/micro_razers-LICENSE apps/ngs_roi/ngs_roi-LICENSE apps/pair_align/pair_align-LICENSE apps/param_chooser/param_chooser-LICENSE apps/rabema/rabema-LICENSE apps/razers/razers-LICENSE apps/razers3/razers3-LICENSE apps/rep_sep/rep_sep-LICENSE apps/sak/sak-LICENSE apps/sam2matrix/sam2matrix-LICENSE apps/samcat/samcat-LICENSE apps/searchjoin/searchjoin-LICENSE apps/seqan_tcoffee/seqan_tcoffee-LICENSE apps/seqcons2/seqcons2-LICENSE apps/sgip/sgip-LICENSE apps/snp_store/snp_store-LICENSE apps/splazers/splazers-LICENSE apps/stellar/stellar-LICENSE apps/tree_recon/tree_recon-LICENSE apps/yara/yara-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/licenses/seqan2-apps + cp -pr apps/rabema/rabema-COPYING /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/licenses/seqan2-apps + exit 0 Provides: seqan = 0:2.4.0-3.fc29 seqan2-apps = 2.4.0-3.fc29 seqan2-apps(riscv-64) = 2.4.0-3.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/bash ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.2.0)(64bit) libgcc_s.so.1(GCC_4.5.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_2.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) librt.so.1()(64bit) librt.so.1(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.10)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Obsoletes: seqan <= 0:1.4.2 Processing files: seqan2-headers-2.4.0-3.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.mTEqNq + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + DOCDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-headers + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-headers + cp -pr README.rst /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-headers + cp -pr CHANGELOG.rst /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-headers Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.FsI3FH + exit 0 + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + LICENSEDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/licenses/seqan2-headers + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/licenses/seqan2-headers + cp -pr include/seqan/LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/licenses/seqan2-headers + exit 0 Provides: bundled(bzip2stream) bundled(zipstream) cmake(seqan) pkgconfig(seqan-2) = 2.4.0 seqan2-headers = 2.4.0-3.fc29 seqan2-headers(riscv-64) = 2.4.0-3.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config cmake-filesystem(riscv-64) pkgconfig(zlib) Processing files: seqan2-examples-2.4.0-3.fc29.riscv64 Provides: seqan2-examples = 2.4.0-3.fc29 seqan2-examples(riscv-64) = 2.4.0-3.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan2-doc-2.4.0-3.fc29.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ZIp6l9 + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + DOCDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-doc + cp -pr README.rst /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-doc + cp -pr CHANGELOG.rst /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/doc/seqan2-doc + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.rHlYZB + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + LICENSEDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/licenses/seqan2-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/licenses/seqan2-doc + cp -pr LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64/usr/share/licenses/seqan2-doc + exit 0 Provides: bundled(3l) = 1.4.4 bundled(bootstrap) = 3.0.0 bundled(less) = 1.3.3 seqan-doc = 0:2.4.0-3.fc29 seqan2-doc = 2.4.0-3.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: seqan-doc <= 0:1.4.2 Processing files: seqan2-debugsource-2.4.0-3.fc29.riscv64 Provides: seqan2-debugsource = 2.4.0-3.fc29 seqan2-debugsource(riscv-64) = 2.4.0-3.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan2-apps-debuginfo-2.4.0-3.fc29.riscv64 Provides: debuginfo(build-id) = 0675e0f921e5c9c0d5fce6e646a08bc934b769aa debuginfo(build-id) = 192a0bf4de66ba82555e9f73f00142e197f82a00 debuginfo(build-id) = 1ef5fa0e9c39393e6debf93488a99df0108f62e6 debuginfo(build-id) = 2b75b00812e804a378c2ed973de02ae4cd7bdb60 debuginfo(build-id) = 2c94e7d6ebaeddad7c9618d5bec1bf1ee8d50589 debuginfo(build-id) = 309bdd171d361484d1bb62a18bebffb4fd74b4c0 debuginfo(build-id) = 40532c957c9f9ddd8b991fae3cf43f298e179b32 debuginfo(build-id) = 433dfc4bf1ebf2ef8ba8599ca8f60375c32a835c debuginfo(build-id) = 435f8f8d62fdfefa58a55df24d81ff85aa01cab0 debuginfo(build-id) = 45ef8491ade8827a908f4c0809dd68e3b7aeb82e debuginfo(build-id) = 4db26b39250e4f69b876fe02f1cdb9f43d14981a debuginfo(build-id) = 5311d49da4287b8b7e78236846ca3c2ee62e0aeb debuginfo(build-id) = 532f35220c58356c5016bd16032a65659d993612 debuginfo(build-id) = 5392c22048cbda5fb2c4ddecbc1ecec4c9bd523c debuginfo(build-id) = 5624c4ae75b00d890baebeec47446873b78dc91e debuginfo(build-id) = 5a480f4c3b9b54c570dd3668cb01c601d478e579 debuginfo(build-id) = 5c7fd06875c834a38bac726c3c05672472f25d93 debuginfo(build-id) = 6a98b8b29a5060b0250d254afcee55cc747aec88 debuginfo(build-id) = 6dc3553e45fa65c0189dbe661d8e916ea8dbd4d0 debuginfo(build-id) = 7165779aa451376563d7171062ed43e2e0939f54 debuginfo(build-id) = 73cdaae9b45b2497d95c1feb46141d28835f0de1 debuginfo(build-id) = 78a67ac9639bb2cb7c8ec8cd52b13c5aacd0a684 debuginfo(build-id) = 7b2c4cf97f3c4346ea410af84a5258371e6b91d2 debuginfo(build-id) = 7fcc0e95698df5d0482046eea9336c35bf1ba066 debuginfo(build-id) = 83869a7d3f465072ff03690694e576fc6c0876b9 debuginfo(build-id) = 8c5287a75bbd5bdbe52f99443003b39bded14405 debuginfo(build-id) = 945da8cce9408a77c35a8f9ad5b0b712041ee07c debuginfo(build-id) = 950c6e4cf34c74cea74df9465f7acf7cbc908133 debuginfo(build-id) = 9777aa12ddecf6986749872c1ff72cb2a9758b94 debuginfo(build-id) = a5d157fa0b2f977c976ec8ac5f83149bed73c7fb debuginfo(build-id) = aa7f57c6566709c592d5de6bed76a77cdf137ed4 debuginfo(build-id) = ad97b91d65dc2301a51f5867a7e1c3e053c6ca9b debuginfo(build-id) = b0b0c5d35a9149d0d659895ae4686446a35f68af debuginfo(build-id) = b2c202a6ef11c3aa9aee1652ee8c4032b9c8a085 debuginfo(build-id) = b4f53db5c8a12b66e08ca4be3ffe49c9366a0753 debuginfo(build-id) = b87543ebc1e1845c0b3b4b5417488fbd0b121940 debuginfo(build-id) = c04538b4084c7bd4aa6cd7e65ab69d5a9d603b55 debuginfo(build-id) = c2ac84b6869d207b6c922d41227cd88b8a92d987 debuginfo(build-id) = c6ee6e52da61149bbbeb2359f233480f376f6cd2 debuginfo(build-id) = d292b14a16ac22f1f9b46e82a7eccb9133c72de0 debuginfo(build-id) = d3e930d54616d89c08bfaf7ca8800ced7253a2a3 debuginfo(build-id) = dc2db77a959c806784ad260e30d423fbe6fc4997 debuginfo(build-id) = e4b9e95d38ff0ebdc538c11b8ce63bb43b3c65ab debuginfo(build-id) = fe3fe74ddc3e5e445fa639a39cd00318c32bc39b seqan2-apps-debuginfo = 2.4.0-3.fc29 seqan2-apps-debuginfo(riscv-64) = 2.4.0-3.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: seqan2-debugsource(riscv-64) = 2.4.0-3.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64 Wrote: /builddir/build/RPMS/seqan2-apps-2.4.0-3.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/seqan2-headers-2.4.0-3.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/seqan2-examples-2.4.0-3.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/seqan2-doc-2.4.0-3.fc29.noarch.rpm Wrote: /builddir/build/RPMS/seqan2-debugsource-2.4.0-3.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/seqan2-apps-debuginfo-2.4.0-3.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.7Yh2bA + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/seqan2-2.4.0-3.fc29.riscv64 + exit 0 Child return code was: 0