Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/rasmol.spec'], chrootPath='/var/lib/mock/f29-build-27620-14607/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/rasmol.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/rasmol-2.7.5.2-13.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/rasmol.spec'], chrootPath='/var/lib/mock/f29-build-27620-14607/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/rasmol.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.HoEL0u + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf RasMol-2.7.5.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/rasmol-2.7.5.2-13May11.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd RasMol-2.7.5.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #1 (rasmol-2.7.5-23Jul09-gtk.patch):' Patch #1 (rasmol-2.7.5-23Jul09-gtk.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/egg-macros.h + echo 'Patch #2 (rasmol-2.7.5-23Jul09-64b.patch):' Patch #2 (rasmol-2.7.5-23Jul09-64b.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/rasmol.h + echo 'Patch #3 (rasmol-2.7.5-23Jul09-man.patch):' Patch #3 (rasmol-2.7.5-23Jul09-man.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file doc/rasmol.1 + echo 'Patch #4 (RasMol-2.7.5.2_sprintf.patch):' Patch #4 (RasMol-2.7.5.2_sprintf.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/command.c + pushd src ~/build/BUILD/RasMol-2.7.5.2/src ~/build/BUILD/RasMol-2.7.5.2 + sed -i -e 's|PKGDIR = $(HOME)|PKGDIR = /usr|' -e 's|/usr/local|/usr|g' -e 's|RASMOLDIR = $(USRLIBDIR)/rasmol/|RASMOLDIR = /usr/share/rasmol/|' -e 's|CBFLIB_DIR)/include/cbflib|CBFLIB_DIR)/include/cbf|' Imakefile_base + sed -i -e 's|_DIR)/lib|_DIR)/lib64|' Imakefile_base + popd ~/build/BUILD/RasMol-2.7.5.2 + rm data/RSML_fixup.csh + chmod 0644 data/1crn.pdb data/1gpd.pdb.gz data/1ldb.pdb.gz data/1ldm.pdb.gz data/3cro.pdb data/4hir.ent.gz data/4ins.CIF data/7lyz.pdb data/IUCR9800028.cif data/asprin.alc data/pdb2mcg.ent doc/GPL doc/GPL.txt doc/INSTALL.html doc/Licenses.txt doc/Makefile doc/NOTICE.html doc/NOTICE.txt doc/RASLIC doc/RASLIC.txt doc/RASWIN.GID doc/README doc/README.gz doc/README.html doc/README.html.gz doc/esrasmol27.html doc/esrasmol2721.html doc/index.html doc/itrasmol.hlp doc/itrasmol271.hlp doc/itrasmol2721.hlp doc/manualA4.pdf.gz doc/manualA4.ps.gz doc/manualA4.rtf.gz doc/manualUS.pdf.gz doc/manualUS.ps.gz doc/manualUS.rtf.gz doc/prepdoc.c doc/rasmol.0.gz doc/rasmol.1 doc/rasmol.1.gz doc/rasmol.doc doc/rasmol.doc.gz doc/rasmol.hlp doc/rasmol.hlp.gz doc/rasmol.html doc/rasmol.html.gz doc/rasmol.man doc/rasmol.tex doc/rasmol.txt.gz doc/rasmol.vms doc/rasmol.vms.gz doc/raswin.hlp doc/raswin.hlp.gz doc/raswin.hpj.gz doc/raswin.rtf doc/raswin.rtf.gz doc/refcardA4.pdf.gz doc/refcardA4.ps.gz doc/refcardA4.rtf.gz doc/refcardUS.pdf.gz doc/refcardUS.ps.gz doc/refcardUS.rtf.gz ChangeLog/ChangeLog.1 ChangeLog/ChangeLog.2 ChangeLog/ChangeLog.3 ChangeLog/ChangeLog.4 ChangeLog/ChangeLog.5 ChangeLog/ChangeLog.6 ChangeLog/ChangeLog.7 ChangeLog/ChangeLog.8 ChangeLog/ChangeLog.9 html_graphics/cifhome.jpg html_graphics/fontsample.jpg html_graphics/iucr.jpg html_graphics/iucrbkgd.jpg html_graphics/iucrhome.jpg html_graphics/noticeButton.jpg html_graphics/oldrasmollogo.jpg html_graphics/pattern,jpg html_graphics/pattern.jpg html_graphics/rasmol_hist_updated.jpg html_graphics/rasmol_hist_updated_small.jpg html_graphics/rasmol_history.jpg html_graphics/rasmolbutton.jpg html_graphics/rasmollogo.jpg html_graphics/rasmollogo_19Jun99.jpg html_graphics/rasmollogo_22Jun99.jpg html_graphics/rasmolwallpaper.jpg html_graphics/rasmolwallpaper_22Jun99.jpg html_graphics/rasmolwallpaper_22Mar99.jpg + chmod 0644 src/abstree.c src/abstree.h src/acos.c src/applemac.c src/bitmaps.h src/cexio.c src/checklong.c src/cif.c src/cif.h src/cif.stx.tab.c src/cif_ctonum.c src/cif_ctonum.h src/cif_fract.c src/cif_fract.h src/cif_stx.c src/cmndline.c src/cmndline.h src/command.c src/command.h src/egg-macros.h src/eggfileformatchooser.c src/eggfileformatchooser.h src/font.h src/graphics.h src/gtkwin.c src/gtkwin.h src/infile.c src/infile.h src/langsel.c src/langsel.h src/langsel_mac.c src/langsel_unix.c src/maps.c src/maps.h src/molecule.c src/molecule.h src/mswin31.c src/multiple.c src/multiple.h src/outfile.c src/outfile.h src/pixutils.c src/pixutils.h src/rasmac.c src/rasmac.h src/rasmol.c src/rasmol.h src/rastxt.c src/raswin.c src/render.c src/render.h src/repres.c src/repres.h src/script.c src/script.h src/string_case.c src/string_case.h src/tokens.c src/tokens.h src/transfor.c src/transfor.h src/vector.c src/vector.h src/wbrotate.c src/wbrotate.h src/x11win.c + chmod 0644 ChangeLog.html NOTICE README.html TODO.html history.html PROJECTS + ls doc/manualA4.pdf.gz doc/manualUS.pdf.gz doc/refcardA4.pdf.gz doc/refcardUS.pdf.gz + xargs gzip -d + iconv -f ISO-8859-1 -t UTF-8 doc/itrasmol2721.hlp + mv doc/itrasmol2721_utf.hlp doc/itrasmol2721.hlp + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.dDaAj9 + umask 022 ~/build/BUILD/RasMol-2.7.5.2/src ~/build/BUILD/RasMol-2.7.5.2 + cd /builddir/build/BUILD + cd RasMol-2.7.5.2 + pushd src + ./rasmol_build_options.sh --pixeldepth=32 --use_gtk + imake -DUseInstalled -Uvector -I/usr/share/X11/config + unlink rasmol.man + make -j4 'CCOPTIONS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' 'EXTRA_LIBRARIES=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' mkdir -p -v ../external_packages mkdir: created directory '../external_packages' echo "/* Automatically generated GTK ui definitions, do not edit! */" > gtkui.h echo >> gtkui.h gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o eggfileformatchooser.o eggfileformatchooser.c echo "const gchar *actionmenu_str = \"\\" >> gtkui.h cat actionmenu.gtk | sed "s/$/\\\/" | sed 's/"/\\\"/g' >> gtkui.h echo "\";" >> gtkui.h echo >> gtkui.h echo "const gchar *sizechooser_str = \"\\" >> gtkui.h BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/lib64/glib-2.0/include/glibconfig.h:11, BUILDSTDERR: from /usr/include/glib-2.0/glib/gtypes.h:32, BUILDSTDERR: from /usr/include/glib-2.0/glib/galloca.h:32, BUILDSTDERR: from /usr/include/glib-2.0/glib.h:30, BUILDSTDERR: from /usr/include/glib-2.0/gobject/gbinding.h:28, BUILDSTDERR: from /usr/include/glib-2.0/glib-object.h:23, BUILDSTDERR: from /usr/include/glib-2.0/gio/gioenums.h:28, BUILDSTDERR: from /usr/include/glib-2.0/gio/giotypes.h:28, BUILDSTDERR: from /usr/include/glib-2.0/gio/gio.h:26, BUILDSTDERR: from /usr/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, BUILDSTDERR: from /usr/include/gtk-2.0/gdk/gdk.h:32, BUILDSTDERR: from /usr/include/gtk-2.0/gtk/gtkwidget.h:34, BUILDSTDERR: from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, BUILDSTDERR: from /usr/include/gtk-2.0/gtk/gtkbin.h:35, BUILDSTDERR: from /usr/include/gtk-2.0/gtk/gtkexpander.h:31, BUILDSTDERR: from eggfileformatchooser.h:22, BUILDSTDERR: from eggfileformatchooser.c:19: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gtk-builder-convert -w sizechooser.glade - | sed "s/$/\\\/" | sed 's/"/\\\"/g' >> gtkui.h echo "\";" >> gtkui.h echo >> gtkui.h echo "const gchar *print_resolution_str = \"\\" >> gtkui.h gtk-builder-convert -w printing-resolution.glade - | sed "s/$/\\\/" | sed 's/"/\\\"/g' >> gtkui.h echo "\";" >> gtkui.h echo >> gtkui.h gdk-pixbuf-csource --name=rasmol_icon --struct rasmol_48x48.xpm >> gtkui.h gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o rasmol.o rasmol.c gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o molecule.o molecule.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdlib.h:25, BUILDSTDERR: from rasmol.c:203: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from molecule.c:220: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o abstree.o abstree.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from abstree.c:81: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: molecule.c: In function 'DescribeMolecule': BUILDSTDERR: molecule.c:446:29: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," (%ld)\n",HetaAtomCount); BUILDSTDERR: ~~^ ~~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: molecule.c: In function 'CreateSurfaceBonds': BUILDSTDERR: molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Long dx, dy, dz; BUILDSTDERR: ^~ BUILDSTDERR: abstree.c: In function 'DescribeObj': BUILDSTDERR: abstree.c:1580:43: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(&buffer[37], "%c%c%c%c %5ld ", BUILDSTDERR: ~~~^ BUILDSTDERR: %5d BUILDSTDERR: str[0], str[1], str[2], str[3], ptr->atm->serno ); BUILDSTDERR: ~~~~~~~~~~~~~~~ BUILDSTDERR: abstree.c:1583:44: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(&buffer[37], "%c%c%c%c;%c %5ld ", BUILDSTDERR: ~~~^ BUILDSTDERR: %5d BUILDSTDERR: str[0], str[1], str[2], str[3] ,ptr->atm->altl, ptr->atm->serno ); BUILDSTDERR: ~~~~~~~~~~~~~~~ BUILDSTDERR: molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Long dx, dy, dz; BUILDSTDERR: ^~ BUILDSTDERR: molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Long dx, dy, dz; BUILDSTDERR: ^~ BUILDSTDERR: At top level: BUILDSTDERR: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] BUILDSTDERR: static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: eggfileformatchooser.c: In function 'egg_file_format_chooser_class_init': BUILDSTDERR: eggfileformatchooser.c:621:3: warning: 'g_type_class_add_private' is deprecated [-Wdeprecated-declarations] BUILDSTDERR: g_type_class_add_private (cls, sizeof (EggFileFormatChooserPrivate)); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/glib-2.0/gobject/gobject.h:24, BUILDSTDERR: from /usr/include/glib-2.0/gobject/gbinding.h:29, BUILDSTDERR: from /usr/include/glib-2.0/glib-object.h:23, BUILDSTDERR: from /usr/include/glib-2.0/gio/gioenums.h:28, BUILDSTDERR: from /usr/include/glib-2.0/gio/giotypes.h:28, BUILDSTDERR: from /usr/include/glib-2.0/gio/gio.h:26, BUILDSTDERR: from /usr/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, BUILDSTDERR: from /usr/include/gtk-2.0/gdk/gdk.h:32, BUILDSTDERR: from /usr/include/gtk-2.0/gtk/gtkwidget.h:34, BUILDSTDERR: from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, BUILDSTDERR: from /usr/include/gtk-2.0/gtk/gtkbin.h:35, BUILDSTDERR: from /usr/include/gtk-2.0/gtk/gtkexpander.h:31, BUILDSTDERR: from eggfileformatchooser.h:22, BUILDSTDERR: from eggfileformatchooser.c:19: BUILDSTDERR: /usr/include/glib-2.0/gobject/gtype.h:1303:10: note: declared here BUILDSTDERR: void g_type_class_add_private (gpointer g_class, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] BUILDSTDERR: static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: rasmol.c:386:12: warning: 'firstpass' defined but not used [-Wunused-variable] BUILDSTDERR: static int firstpass=1; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: rasmol.c:331:23: warning: 'IntrTerm' defined but not used [-Wunused-variable] BUILDSTDERR: static struct termios IntrTerm; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: rasmol.c:330:23: warning: 'OrigTerm' defined but not used [-Wunused-variable] BUILDSTDERR: static struct termios OrigTerm; BUILDSTDERR: ^~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o cmndline.o cmndline.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from cmndline.c:82: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: cmndline.c: In function 'ProcessMouseMove': BUILDSTDERR: cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: for (index=0; index<10; index++) BUILDSTDERR: ^~~ BUILDSTDERR: cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: SaveQuat.w = DialQRot.w; BUILDSTDERR: ^~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o command.o command.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from command.c:91: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: command.c: In function 'Find_Symbol_Definition': BUILDSTDERR: command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Symbol __far * prevsymbol; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: command.c: In function 'PlayMovieFrame': BUILDSTDERR: command.c:1493:8: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int checkfile; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: command.c: In function 'ParseExpression': BUILDSTDERR: command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(SheetTok): if( Info.laddercount < 0 ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: pred = PredSheet; BUILDSTDERR: ^~~~ BUILDSTDERR: command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(TurnTok): if( Info.turncount < 0 ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: pred = PredTurn; BUILDSTDERR: ^~~~ BUILDSTDERR: command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(CystineTok): if( Info.ssbondcount < 0 ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: pred = PredCystine; BUILDSTDERR: ^~~~ BUILDSTDERR: command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(CisBondedTok):if( Info.cisbondcount<0 ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: pred = PredCisBond; BUILDSTDERR: ^~~~ BUILDSTDERR: command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case('-'): if( NextIf(NumberTok,ErrNotNum) ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: return( ParseRange(True) ); BUILDSTDERR: ^~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o transfor.o transfor.c BUILDSTDERR: command.c: In function 'ExecuteShowCommand': BUILDSTDERR: command.c:4124:43: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(buffer,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: command.c:4124:47: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(buffer,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: command.c:4124:51: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(buffer,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~~ BUILDSTDERR: %d BUILDSTDERR: command.c:4173:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(buffer,"bond %ld %ld pick\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: (brptr->BSrcAtom)->serno, (brptr->BDstAtom)->serno); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: command.c:4173:48: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(buffer,"bond %ld %ld pick\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: (brptr->BSrcAtom)->serno, (brptr->BDstAtom)->serno); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: command.c: In function 'ReadAtomSelection': BUILDSTDERR: command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext ) BUILDSTDERR: ^~~ BUILDSTDERR: command.c:4263:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: SelectCount = 0; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: command.c:4279:4: warning: value computed is not used [-Wunused-value] BUILDSTDERR: *TokenPtr--; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: command.c:4296:6: warning: value computed is not used [-Wunused-value] BUILDSTDERR: *TokenPtr--; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: command.c:4337:13: warning: value computed is not used [-Wunused-value] BUILDSTDERR: *TokenPtr++; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from transfor.c:198: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: command.c: In function 'ApplyMapAtomSelection': BUILDSTDERR: command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] BUILDSTDERR: size_t visits; BUILDSTDERR: ^~~~~~ BUILDSTDERR: transfor.c: In function 'SetVanWaalRadius': BUILDSTDERR: transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( (ptr->irad)+iProbeRad>MaxAtomRadius ) BUILDSTDERR: ^~ BUILDSTDERR: transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: ptr->flag |= ExpandFlag; BUILDSTDERR: ^~~ BUILDSTDERR: transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( ptr->irad>MaxAtomRadius ) BUILDSTDERR: ^~ BUILDSTDERR: transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: ptr->flag &= ~ExpandFlag; BUILDSTDERR: ^~~ BUILDSTDERR: transfor.c: In function 'ColourPointAttrib': BUILDSTDERR: transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int i,shade,nshade,result; BUILDSTDERR: ^~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o render.o render.c BUILDSTDERR: transfor.c: In function 'StructColourAttrib': BUILDSTDERR: transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( !Database ) BUILDSTDERR: ^~ BUILDSTDERR: transfor.c:3066:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: ColourBondNone(); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from render.c:189: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: transfor.c: In function 'ResetTransform': BUILDSTDERR: transfor.c:4080:5: warning: implicit declaration of function 'EnableRotBondMenu'; did you mean 'EnableMenus'? [-Wimplicit-function-declaration] BUILDSTDERR: EnableRotBondMenu(False); BUILDSTDERR: ^~~~~~~~~~~~~~~~~ BUILDSTDERR: EnableMenus BUILDSTDERR: command.c: In function 'ExecuteCommandOne': BUILDSTDERR: command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(ResetTok): for( i=0; i<10; i++ ) BUILDSTDERR: ^~~ BUILDSTDERR: command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: ReDrawFlag |= RFDials; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(HelpTok): if( !HelpFileName ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( HelpInfo ) BUILDSTDERR: ^~ BUILDSTDERR: render.c: In function 'DescribeAtom': BUILDSTDERR: render.c:2048:34: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: cur += sprintf(cur, " (%ld)", ptr->atm->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: render.c: In function 'PickAtoms': BUILDSTDERR: render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( !QAtom ) BUILDSTDERR: ^~ BUILDSTDERR: render.c:2079:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( PickMode==PickCentr && shift ) BUILDSTDERR: ^~ BUILDSTDERR: render.c:2111:33: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: cur += sprintf(cur, " %ld ", QAtom->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: } else BUILDSTDERR: ^~~~ BUILDSTDERR: render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: QAtom->label = label; BUILDSTDERR: ^~~~~ BUILDSTDERR: command.c: In function 'ExecuteIPCCommand': BUILDSTDERR: command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: } else if( *ptr=='[' ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( len < MAXBUFFLEN-1 ) BUILDSTDERR: ^~ BUILDSTDERR: At top level: BUILDSTDERR: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] BUILDSTDERR: static int Define_Symbol(const char __far * string, const char __far * definition) { BUILDSTDERR: ^~~~~~~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o repres.o repres.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from repres.c:234: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: repres.c: In function 'CreateMonitor': BUILDSTDERR: repres.c:766:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: repres.c:768:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",src); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: repres.c:769:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",src,dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: repres.c:769:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",src,dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: repres.c: In function 'TestSolventDot': BUILDSTDERR: repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c: In function 'CalculateSurface': BUILDSTDERR: repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( !Database ) BUILDSTDERR: ^~ BUILDSTDERR: repres.c:1116:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: DotCount = density; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: repres.c: In function 'LoadDotsFile': BUILDSTDERR: repres.c:1208:31: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer,"%ld dots read from file\n",count); BUILDSTDERR: ~~^ ~~~~~ BUILDSTDERR: %d BUILDSTDERR: transfor.c: In function 'ScaleColourMap': BUILDSTDERR: transfor.c:1702:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] BUILDSTDERR: { ScaleRef[i].r = 0; BUILDSTDERR: ~~~~~~~~^~~ BUILDSTDERR: transfor.c:1703:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] BUILDSTDERR: ScaleRef[i].g = 0; BUILDSTDERR: ~~~~~~~~^~~ BUILDSTDERR: transfor.c:1704:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] BUILDSTDERR: ScaleRef[i].b = 255; BUILDSTDERR: ~~~~~~~~^~~ BUILDSTDERR: transfor.c:1705:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] BUILDSTDERR: ScaleRef[i].shade = 0; BUILDSTDERR: ~~~~~~~~^~~ BUILDSTDERR: transfor.c:1706:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] BUILDSTDERR: ScaleRef[i].col = 0; BUILDSTDERR: ~~~~~~~~^~~ BUILDSTDERR: command.c: In function 'FetchFile': BUILDSTDERR: command.c:678:54: warning: '%s' directive writing up to 1023 bytes into a region of size 105 [-Wformat-overflow=] BUILDSTDERR: sprintf(buffer,"trap \"\" 13; gzip -cdq '%s' 2> /dev/null\n", BUILDSTDERR: ^~ BUILDSTDERR: DataFileName); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from command.c:118: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 39 and 1062 bytes into a destination of size 128 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: command.c:674:58: warning: '%s' directive writing up to 1023 bytes into a region of size 101 [-Wformat-overflow=] BUILDSTDERR: sprintf(buffer,"trap \"\" 13; uncompress -c '%s' 2> /dev/null\n", BUILDSTDERR: ^~ BUILDSTDERR: DataFileName); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from command.c:118: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 43 and 1066 bytes into a destination of size 128 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: command.c: In function 'ApplyMapShow': BUILDSTDERR: command.c:5365:123: warning: ' BUILDSTDERR: ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] BUILDSTDERR: sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", BUILDSTDERR: ^~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from command.c:118: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: command.c:5375:123: warning: ' BUILDSTDERR: ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] BUILDSTDERR: sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", BUILDSTDERR: ^~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from command.c:118: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o pixutils.o pixutils.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from pixutils.c:183: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: pixutils.c: In function 'ClipDashLine': BUILDSTDERR: pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Pixel c, ca, mid; BUILDSTDERR: ^~ BUILDSTDERR: pixutils.c: In function 'DrawCircle': BUILDSTDERR: pixutils.c:2606:6: warning: variable 'updown' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int updown, ifirst; BUILDSTDERR: ^~~~~~ BUILDSTDERR: pixutils.c: In function 'DrawCylinderCaps': BUILDSTDERR: pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int p, alts, altc; BUILDSTDERR: ^~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o outfile.o outfile.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from outfile.c:170: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: outfile.c: In function 'WriteVectSphere': BUILDSTDERR: outfile.c:1738:31: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%g %ld %ld ",radf,ptr->x,ptr->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1738:35: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%g %ld %ld ",radf,ptr->x,ptr->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c: In function 'WriteVectWire': BUILDSTDERR: outfile.c:1825:28: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld ",src->x,src->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1825:32: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld ",src->x,src->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1835:24: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld Wire\n",dst->x,dst->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1835:28: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld Wire\n",dst->x,dst->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c: In function 'WriteVectStick': BUILDSTDERR: outfile.c:1930:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1930:36: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1941:28: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: command.c: In function 'ExecuteCommandOne': BUILDSTDERR: command.c:5906:60: warning: '%g' directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] BUILDSTDERR: sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); BUILDSTDERR: ^~ BUILDSTDERR: outfile.c:1941:32: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1954:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: command.c:5906:36: note: assuming directive output of 12 bytes BUILDSTDERR: sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from command.c:118: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 25 and 49 bytes into a destination of size 40 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: outfile.c:1954:36: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1960:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1960:40: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1966:28: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1966:32: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1978:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1978:36: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c: In function 'WriteVectDots': BUILDSTDERR: outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int temp, tump; BUILDSTDERR: ^~~~ BUILDSTDERR: outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int temp, tump; BUILDSTDERR: ^~~~ BUILDSTDERR: outfile.c: In function 'WriteVectMapPoints': BUILDSTDERR: outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int temp, tump; BUILDSTDERR: ^~~~ BUILDSTDERR: outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int temp, tump; BUILDSTDERR: ^~~~ BUILDSTDERR: outfile.c: In function 'WriteVectLabels': BUILDSTDERR: outfile.c:2111:37: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"(%s) %ld %ld Label\n",buffer,aptr->x,aptr->y); BUILDSTDERR: ~~^ ~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:2111:41: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"(%s) %ld %ld Label\n",buffer,aptr->x,aptr->y); BUILDSTDERR: ~~^ ~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c: In function 'R3DSphere': BUILDSTDERR: outfile.c:2601:24: warning: variable 'z1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Real x1, y1, z1; /* coordinates after rotation and translation*/ BUILDSTDERR: ^~ BUILDSTDERR: outfile.c:2601:20: warning: variable 'y1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Real x1, y1, z1; /* coordinates after rotation and translation*/ BUILDSTDERR: ^~ BUILDSTDERR: outfile.c:2601:16: warning: variable 'x1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Real x1, y1, z1; /* coordinates after rotation and translation*/ BUILDSTDERR: ^~ BUILDSTDERR: outfile.c: In function 'R3DStrandRibbon': BUILDSTDERR: outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int qsx, qsy, qsz; BUILDSTDERR: ^~~ BUILDSTDERR: At top level: BUILDSTDERR: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] BUILDSTDERR: static void WriteVectMapBonds( void) { BUILDSTDERR: ^~~~~~~~~~~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o script.o script.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from script.c:164: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: script.c: In function 'WriteScriptSelectBond': BUILDSTDERR: script.c:801:39: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select (atomno=%ld) or (atomno==%ld)\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: src->serno, dst->serno); BUILDSTDERR: ~~~~~~~~~~ BUILDSTDERR: script.c:801:56: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select (atomno=%ld) or (atomno==%ld)\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: src->serno, dst->serno); BUILDSTDERR: ~~~~~~~~~~ BUILDSTDERR: script.c: In function 'WriteScriptRibbons': BUILDSTDERR: script.c:1100:51: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select atomno=%ld\n",aptr->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c: In function 'WriteScriptMonitors': BUILDSTDERR: script.c:1232:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"monitor %ld %ld\n",ptr->src->serno,ptr->dst->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1232:40: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"monitor %ld %ld\n",ptr->src->serno,ptr->dst->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c: In function 'WriteScriptMaps': BUILDSTDERR: script.c:1313:55: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select atomno=%ld\n",mas->loserno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1315:56: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select atomno>=%ld and atomno>=%ld \n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: mas->loserno,mas->hiserno); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: script.c:1315:72: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select atomno>=%ld and atomno>=%ld \n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: mas->loserno,mas->hiserno); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: script.c:1335:67: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select selected or atomno=%ld\n",mas->loserno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1337:69: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select selected or (atomno>=%ld and atomno>=%ld) \n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: mas->loserno,mas->hiserno); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: script.c:1337:85: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select selected or (atomno>=%ld and atomno>=%ld) \n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: mas->loserno,mas->hiserno); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: script.c: In function 'WriteScriptFile': BUILDSTDERR: script.c:1461:33: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"bond %ld %ld pick\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: brptr->BSrcAtom->serno, brptr->BDstAtom->serno); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: script.c:1461:37: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"bond %ld %ld pick\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: brptr->BSrcAtom->serno, brptr->BDstAtom->serno); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: script.c:1491:35: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1491:39: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1491:43: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c: In function 'OutputKinemageVector': BUILDSTDERR: script.c:1644:41: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else fprintf(OutFile,"{%.4s %ld}",ElemDesc[src->refno],src->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1667:37: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else fprintf(OutFile,"{%.4s %ld}",ElemDesc[dst->refno],dst->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c: In function 'WriteKinemageSpheres': BUILDSTDERR: script.c:1744:49: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else fprintf(OutFile,"{%.4s %ld}",ElemDesc[aptr->refno], BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: aptr->serno); BUILDSTDERR: ~~~~~~~~~~~ BUILDSTDERR: script.c: In function 'POVWriteHeader': BUILDSTDERR: script.c:2937:34: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"// OrigCX = %ld, OrigCY = %ld, OrigCZ = %ld, Scale = %g\n\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: OrigCX, OrigCY, OrigCZ, Scale); BUILDSTDERR: ~~~~~~ BUILDSTDERR: script.c:2937:48: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"// OrigCX = %ld, OrigCY = %ld, OrigCZ = %ld, Scale = %g\n\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: OrigCX, OrigCY, OrigCZ, Scale); BUILDSTDERR: ~~~~~~ BUILDSTDERR: script.c:2937:62: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"// OrigCX = %ld, OrigCY = %ld, OrigCZ = %ld, Scale = %g\n\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: OrigCX, OrigCY, OrigCZ, Scale); BUILDSTDERR: ~~~~~~ BUILDSTDERR: At top level: BUILDSTDERR: script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] BUILDSTDERR: static void WriteVRMLLine( int src, int dst, int shade, int *flag ) BUILDSTDERR: ^~~~~~~~~~~~~ BUILDSTDERR: outfile.c: In function 'WriteR3DFile': BUILDSTDERR: outfile.c:2871:26: warning: '%s' directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] BUILDSTDERR: sprintf((char *)name,"%s",buffer); BUILDSTDERR: ^~ ~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from outfile.c:191: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 1 and 80 bytes into a destination of size 22 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o infile.o infile.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from infile.c:196: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: infile.c: In function 'ApplyBondInfo': BUILDSTDERR: infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext) BUILDSTDERR: ^~~ BUILDSTDERR: infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: if (AtomNum1) break; BUILDSTDERR: ^~ BUILDSTDERR: infile.c: In function 'LoadXYZMolecule': BUILDSTDERR: infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( !FetchRecord(DataFile,Record) ) BUILDSTDERR: ^~ BUILDSTDERR: infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: xpos = ypos = zpos = 0.0; BUILDSTDERR: ^~~~ BUILDSTDERR: infile.c: In function 'LoadMol2Molecule': BUILDSTDERR: infile.c:1497:38: warning: format '%ld' expects argument of type 'long int *', but argument 4 has type 'Long *' {aka 'int *'} [-Wformat=] BUILDSTDERR: sscanf(Record,"%ld %ld %ld %s", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: &serno,&srcatm,&dstatm,type); BUILDSTDERR: ~~~~~~~ BUILDSTDERR: infile.c:1497:42: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'Long *' {aka 'int *'} [-Wformat=] BUILDSTDERR: sscanf(Record,"%ld %ld %ld %s", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: &serno,&srcatm,&dstatm,type); BUILDSTDERR: ~~~~~~~ BUILDSTDERR: infile.c: In function 'LoadAlchemyMolecule': BUILDSTDERR: infile.c:1581:26: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'Long *' {aka 'int *'} [-Wformat=] BUILDSTDERR: sscanf(Record,"%ld %ld %ld",&serno,&srcatm,&dstatm); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: infile.c:1581:30: warning: format '%ld' expects argument of type 'long int *', but argument 4 has type 'Long *' {aka 'int *'} [-Wformat=] BUILDSTDERR: sscanf(Record,"%ld %ld %ld",&serno,&srcatm,&dstatm); BUILDSTDERR: ~~^ ~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: infile.c:1581:34: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'Long *' {aka 'int *'} [-Wformat=] BUILDSTDERR: sscanf(Record,"%ld %ld %ld",&serno,&srcatm,&dstatm); BUILDSTDERR: ~~^ ~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: infile.c: In function 'LoadCIFMolecule': BUILDSTDERR: infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if (!cif_datablock_name (cif, &dbname)) BUILDSTDERR: ^~ BUILDSTDERR: infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: Info.moleculename[55] = '\0'; BUILDSTDERR: ^~~~ BUILDSTDERR: infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int oNMRModel; BUILDSTDERR: ^~~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o tokens.o tokens.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/string.h:26, BUILDSTDERR: from tokens.c:194: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o cif_fract.o cif_fract.c gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o cif.o cif.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from cif_fract.c:197: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from cif.c:278: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o cif_ctonum.o cif_ctonum.c BUILDSTDERR: cif_ctonum.c:198: warning: "_USE_RASMOL_H_" redefined BUILDSTDERR: #define _USE_RASMOL_H_ BUILDSTDERR: BUILDSTDERR: : note: this is the location of the previous definition BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from cif_ctonum.c:200: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o cif_stx.o cif_stx.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from cif_stx.c:227: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o multiple.o multiple.c gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o vector.o vector.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from multiple.c:225: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from vector.c:159: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: multiple.c: In function 'SelectMolecule': BUILDSTDERR: multiple.c:557:5: warning: implicit declaration of function 'set_gtk_open_file' [-Wimplicit-function-declaration] BUILDSTDERR: set_gtk_open_file(index); BUILDSTDERR: ^~~~~~~~~~~~~~~~~ BUILDSTDERR: multiple.c: In function 'DrawMoleculeList': BUILDSTDERR: multiple.c:677:3: warning: implicit declaration of function 'UpdateGtkMoleculeList'; did you mean 'DrawMoleculeList'? [-Wimplicit-function-declaration] BUILDSTDERR: UpdateGtkMoleculeList(); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: DrawMoleculeList gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o wbrotate.o wbrotate.c gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o langsel_unix.o langsel_unix.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from langsel_unix.c:114: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from wbrotate.c:201: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: langsel_unix.c: In function 'SwitchLang': BUILDSTDERR: langsel_unix.c:2347:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if (Interactive) BUILDSTDERR: ^~ BUILDSTDERR: langsel_unix.c:2349:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if (Language != lang) { BUILDSTDERR: ^~ BUILDSTDERR: wbrotate.c: In function 'RemoveBond': BUILDSTDERR: wbrotate.c:366:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",ndst); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:368:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",nsrc); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:369:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",nsrc,ndst); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:369:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",nsrc,ndst); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:455:5: warning: implicit declaration of function 'EnableRotBondMenu'; did you mean 'EnableMenus'? [-Wimplicit-function-declaration] BUILDSTDERR: EnableRotBondMenu(False); BUILDSTDERR: ^~~~~~~~~~~~~~~~~ BUILDSTDERR: EnableMenus BUILDSTDERR: wbrotate.c: In function 'CreateBondAxis': BUILDSTDERR: wbrotate.c:568:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:570:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",src); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:571:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",src,dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:571:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",src,dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o maps.o maps.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from maps.c:81: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: maps.c: In function 'SaveMapFile': BUILDSTDERR: maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: maps.c: In function 'LoadCBFMapFile': BUILDSTDERR: maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase; BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmap_xbase, fcmap_ybase, fcmap_zbase; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase; BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double ocmap_xbase, ocmap_ybase, ocmap_zbase; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Long mapmask_xbase, mapmask_ybase, mapmask_zbase; BUILDSTDERR: ^~~~~~~~~~~~~ BUILDSTDERR: maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Long map_xbase, map_ybase, map_zbase; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: maps.c: In function 'LoadCCP4MapFile': BUILDSTDERR: maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int rawelsize; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: In file included from maps.c:96: BUILDSTDERR: maps.c: In function 'map_points': BUILDSTDERR: maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] BUILDSTDERR: MapPointm2o(map,mp,gradient); BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: maps.h:187:10: note: in definition of macro 'MapPointm2o' BUILDSTDERR: if (gradient) { \ BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] BUILDSTDERR: MapPointm2o(map,mp,gradient); BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: maps.h:187:10: note: in definition of macro 'MapPointm2o' BUILDSTDERR: if (gradient) { \ BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Long koffsets[3][2]; /* The offsets back to the prior cells */ BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */ BUILDSTDERR: ^~~~~ BUILDSTDERR: maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int haveedges[3], havefaces[3], havebody; BUILDSTDERR: ^~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -I/usr/include/vte-0.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -pthread -DGTKWIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -c -o gtkwin.o gtkwin.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/string.h:26, BUILDSTDERR: from gtkwin.c:81: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from gtkwin.c:107: BUILDSTDERR: gtkui.h:393:3: warning: pointer targets in initialization of 'guint8 *' {aka 'unsigned char *'} from 'char *' differ in signedness [-Wpointer-sign] BUILDSTDERR: "\303\0\0\0\0\11\322\323\342\377\233\234\271\377\205\205\255\377\214\213" BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: gtkui.h:393:3: note: (near initialization for 'rasmol_icon.pixel_data') BUILDSTDERR: maps.c: In function 'SaveMapFile': BUILDSTDERR: maps.c:394:51: warning: 'mapinfo' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cbf_failnez (cbf_set_value(cbf,mapinfo->MapFile)) BUILDSTDERR: ^~ BUILDSTDERR: gtkwin.c: In function 'save_cb': BUILDSTDERR: gtkwin.c:388:4: warning: implicit declaration of function 'SavePDBMolecule'; did you mean 'SelectMolecule'? [-Wimplicit-function-declaration] BUILDSTDERR: SavePDBMolecule(prevname); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: SelectMolecule BUILDSTDERR: gtkwin.c: In function 'sizeradio_cb': BUILDSTDERR: gtkwin.c:463:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] BUILDSTDERR: radioid = (int) data; BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:62, BUILDSTDERR: from /usr/include/vte-0.0/vte/vte.h:22, BUILDSTDERR: from gtkwin.c:87: BUILDSTDERR: gtkwin.c: In function 'build_exportdialog': BUILDSTDERR: gtkwin.c:532:14: warning: too many arguments for format [-Wformat-extra-args] BUILDSTDERR: g_message ("building size chooser failed: s", err->message); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /usr/include/glib-2.0/glib/gmessages.h:333:32: note: in definition of macro 'g_message' BUILDSTDERR: __VA_ARGS__) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: gtkwin.c: In function 'export_cb': BUILDSTDERR: gtkwin.c:593:11: warning: unused variable 'tmplist' [-Wunused-variable] BUILDSTDERR: GSList *tmplist = NULL; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: gtkwin.c: In function 'print_get_res_cb': BUILDSTDERR: gtkwin.c:745:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] BUILDSTDERR: print_resolution = (int) g_object_get_data(G_OBJECT(el->data), "res"); BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:62, BUILDSTDERR: from /usr/include/vte-0.0/vte/vte.h:22, BUILDSTDERR: from gtkwin.c:87: BUILDSTDERR: gtkwin.c: In function 'print_build_reswidget_cb': BUILDSTDERR: gtkwin.c:762:14: warning: too many arguments for format [-Wformat-extra-args] BUILDSTDERR: g_message ("building size chooser failed: s", err->message); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /usr/include/glib-2.0/glib/gmessages.h:333:32: note: in definition of macro 'g_message' BUILDSTDERR: __VA_ARGS__) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: gtkwin.c: In function 'build_gtkmenu': BUILDSTDERR: gtkwin.c:1178:19: warning: too many arguments for format [-Wformat-extra-args] BUILDSTDERR: g_message("building menus failed: s", error->message); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /usr/include/glib-2.0/glib/gmessages.h:333:32: note: in definition of macro 'g_message' BUILDSTDERR: __VA_ARGS__) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: gtkwin.c:1139:9: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: int i; BUILDSTDERR: ^ BUILDSTDERR: gtkwin.c: In function 'do_popup_menu': BUILDSTDERR: gtkwin.c:1235:7: warning: variable 'button' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int button, event_time; BUILDSTDERR: ^~~~~~ BUILDSTDERR: gtkwin.c: In function 'motion_cb': BUILDSTDERR: gtkwin.c:1434:28: warning: variable 'yorig' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int stat, x, y, xorig, yorig; BUILDSTDERR: ^~~~~ BUILDSTDERR: gtkwin.c:1434:21: warning: variable 'xorig' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int stat, x, y, xorig, yorig; BUILDSTDERR: ^~~~~ BUILDSTDERR: gtkwin.c: In function 'OpenDisplay': BUILDSTDERR: gtkwin.c:1669:5: warning: 'gdk_pixbuf_from_pixdata' is deprecated [-Wdeprecated-declarations] BUILDSTDERR: gtk_window_set_default_icon(gdk_pixbuf_from_pixdata(&rasmol_icon, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from gtkwin.c:90: BUILDSTDERR: /usr/include/gdk-pixbuf-2.0/gdk-pixbuf/gdk-pixdata.h:119:12: note: declared here BUILDSTDERR: GdkPixbuf* gdk_pixbuf_from_pixdata (const GdkPixdata *pixdata, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: At top level: BUILDSTDERR: gtkwin.c:187:18: warning: 'm_f_saveas' defined but not used [-Wunused-const-variable=] BUILDSTDERR: static const int m_f_saveas = (FILEMENU + 2); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: gtkwin.c:186:18: warning: 'm_f_open' defined but not used [-Wunused-const-variable=] BUILDSTDERR: static const int m_f_open = (FILEMENU + 1); BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: In file included from gtkwin.c:95: BUILDSTDERR: bitmaps.h:134:22: warning: 'HGlassMask' defined but not used [-Wunused-variable] BUILDSTDERR: static unsigned char HGlassMask[] = { BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: bitmaps.h:129:22: warning: 'HGlassData' defined but not used [-Wunused-variable] BUILDSTDERR: static unsigned char HGlassData[] = { BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: bitmaps.h:126:22: warning: 'ScrlTile' defined but not used [-Wunused-variable] BUILDSTDERR: static unsigned char ScrlTile[] = { 0x11, 0x00, 0x44, 0x00, BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: bitmaps.h:120:22: warning: 'RgArrow' defined but not used [-Wunused-variable] BUILDSTDERR: static unsigned char RgArrow[] = { BUILDSTDERR: ^~~~~~~ BUILDSTDERR: bitmaps.h:114:22: warning: 'LfArrow' defined but not used [-Wunused-variable] BUILDSTDERR: static unsigned char LfArrow[] = { BUILDSTDERR: ^~~~~~~ BUILDSTDERR: bitmaps.h:108:22: warning: 'DnArrow' defined but not used [-Wunused-variable] BUILDSTDERR: static unsigned char DnArrow[] = { BUILDSTDERR: ^~~~~~~ BUILDSTDERR: bitmaps.h:102:22: warning: 'UpArrow' defined but not used [-Wunused-variable] BUILDSTDERR: static unsigned char UpArrow[] = { BUILDSTDERR: ^~~~~~~ BUILDSTDERR: bitmaps.h:80:22: warning: 'icon_bits' defined but not used [-Wunused-variable] BUILDSTDERR: static unsigned char icon_bits[] = { BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: gtkwin.c: In function 'UpdateGtkMoleculeList': BUILDSTDERR: gtkwin.c:1121:32: warning: '%d' directive output may be truncated writing between 1 and 10 bytes into a region of size 3 [-Wformat-truncation=] BUILDSTDERR: snprintf(itemname, 3, "%d", i); BUILDSTDERR: ^~ BUILDSTDERR: gtkwin.c:1121:31: note: directive argument in the range [0, 2147483647] BUILDSTDERR: snprintf(itemname, 3, "%d", i); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from gtkwin.c:82: BUILDSTDERR: /usr/include/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 3 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f rasmol gcc -o rasmol -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -L/usr/lib64 rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o gtkwin.o eggfileformatchooser.o -lm -lXi -lXext -lX11 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lvte -lX11 -lXext -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfontconfig -lfreetype -L/usr/lib64 -lcbf -L/usr/lib64 -lCQRlib -L/usr/lib64 -lCVector -L/usr/lib64 -lCNearTree ln -s ../doc/rasmol.1 rasmol.man rm -f rasmol._man if test -z "" ; then \ cd `dirname rasmol` && \ ln -s `basename rasmol.man` `basename rasmol._man`; \ else \ cpp -undef -traditional -D__apploaddir__=/usr/share/X11/app-defaults -D__appmansuffix__=1x -D__filemansuffix__=5x -D__libmansuffix__=3x -D__miscmansuffix__=7 -D__drivermansuffix__=4 -D__adminmansuffix__=8 -D__projectroot__=/usr -D__xconfigfile__=xorg.conf -D__xconfigdir__=/usr/lib/X11 -D__xlogfile__=Xorg -D__xservername__=Xorg -D__xorgversion__="\"`echo 7 7 0 | sed -e 's/ /./g' -e 's/^/Version\\\ /'`\" \"X Version 11\"" -D__vendorversion__="`echo 7 7 0 | sed -e 's/ /./g' -e 's/^/Version\\\ /'` X.Org" \ < rasmol.man | sed -e '/^# *[0-9][0-9]* *.*$/d' -e '/^#line *[0-9][0-9]* *.*$/d' -e '/^[ ]*XCOMM$/s/XCOMM/#/' -e '/^[ ]*XCOMM[^a-zA-Z0-9_]/s/XCOMM/#/' -e '/^[ ]*XHASH/s/XHASH/#/' -e '/\@\@$/s/\@\@$/\\/' >rasmol._man; \ fi + mv rasmol grasmol + make distclean rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* rm -f Makefile Makefile.dep + ./rasmol_build_options.sh --pixeldepth=32 --use_xformslib + imake -DUseInstalled -Uvector -I/usr/share/X11/config + make -j4 'CCOPTIONS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' 'EXTRA_LIBRARIES=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o rasmol.o rasmol.c gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o molecule.o molecule.c gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o abstree.o abstree.c gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o cmndline.o cmndline.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdlib.h:25, BUILDSTDERR: from rasmol.c:203: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from abstree.c:81: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from cmndline.c:82: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from molecule.c:220: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: abstree.c: In function 'DescribeObj': BUILDSTDERR: abstree.c:1580:43: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(&buffer[37], "%c%c%c%c %5ld ", BUILDSTDERR: ~~~^ BUILDSTDERR: %5d BUILDSTDERR: str[0], str[1], str[2], str[3], ptr->atm->serno ); BUILDSTDERR: ~~~~~~~~~~~~~~~ BUILDSTDERR: abstree.c:1583:44: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(&buffer[37], "%c%c%c%c;%c %5ld ", BUILDSTDERR: ~~~^ BUILDSTDERR: %5d BUILDSTDERR: str[0], str[1], str[2], str[3] ,ptr->atm->altl, ptr->atm->serno ); BUILDSTDERR: ~~~~~~~~~~~~~~~ BUILDSTDERR: cmndline.c: In function 'ProcessMouseMove': BUILDSTDERR: cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: for (index=0; index<10; index++) BUILDSTDERR: ^~~ BUILDSTDERR: cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: SaveQuat.w = DialQRot.w; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: molecule.c: In function 'DescribeMolecule': BUILDSTDERR: molecule.c:446:29: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," (%ld)\n",HetaAtomCount); BUILDSTDERR: ~~^ ~~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: molecule.c: In function 'CreateSurfaceBonds': BUILDSTDERR: molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Long dx, dy, dz; BUILDSTDERR: ^~ BUILDSTDERR: molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Long dx, dy, dz; BUILDSTDERR: ^~ BUILDSTDERR: molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Long dx, dy, dz; BUILDSTDERR: ^~ BUILDSTDERR: At top level: BUILDSTDERR: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] BUILDSTDERR: static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] BUILDSTDERR: static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o command.o command.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from command.c:91: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: command.c: In function 'Find_Symbol_Definition': BUILDSTDERR: command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Symbol __far * prevsymbol; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: command.c: In function 'PlayMovieFrame': BUILDSTDERR: command.c:1493:8: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int checkfile; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: command.c: In function 'ParseExpression': BUILDSTDERR: command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(SheetTok): if( Info.laddercount < 0 ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: pred = PredSheet; BUILDSTDERR: ^~~~ BUILDSTDERR: command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(TurnTok): if( Info.turncount < 0 ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: pred = PredTurn; BUILDSTDERR: ^~~~ BUILDSTDERR: command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(CystineTok): if( Info.ssbondcount < 0 ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: pred = PredCystine; BUILDSTDERR: ^~~~ BUILDSTDERR: command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(CisBondedTok):if( Info.cisbondcount<0 ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: pred = PredCisBond; BUILDSTDERR: ^~~~ BUILDSTDERR: command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case('-'): if( NextIf(NumberTok,ErrNotNum) ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: return( ParseRange(True) ); BUILDSTDERR: ^~~~~~ BUILDSTDERR: command.c: In function 'ExecuteShowCommand': BUILDSTDERR: command.c:4124:43: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(buffer,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: command.c:4124:47: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(buffer,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: command.c:4124:51: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(buffer,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~~ BUILDSTDERR: %d BUILDSTDERR: command.c:4173:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(buffer,"bond %ld %ld pick\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: (brptr->BSrcAtom)->serno, (brptr->BDstAtom)->serno); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: command.c:4173:48: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: sprintf(buffer,"bond %ld %ld pick\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: (brptr->BSrcAtom)->serno, (brptr->BDstAtom)->serno); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: command.c: In function 'ReadAtomSelection': BUILDSTDERR: command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext ) BUILDSTDERR: ^~~ BUILDSTDERR: command.c:4263:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: SelectCount = 0; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: command.c:4279:4: warning: value computed is not used [-Wunused-value] BUILDSTDERR: *TokenPtr--; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: command.c:4296:6: warning: value computed is not used [-Wunused-value] BUILDSTDERR: *TokenPtr--; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: command.c:4337:13: warning: value computed is not used [-Wunused-value] BUILDSTDERR: *TokenPtr++; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: command.c: In function 'ApplyMapAtomSelection': BUILDSTDERR: command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] BUILDSTDERR: size_t visits; BUILDSTDERR: ^~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o transfor.o transfor.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from transfor.c:198: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: transfor.c: In function 'SetVanWaalRadius': BUILDSTDERR: transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( (ptr->irad)+iProbeRad>MaxAtomRadius ) BUILDSTDERR: ^~ BUILDSTDERR: transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: ptr->flag |= ExpandFlag; BUILDSTDERR: ^~~ BUILDSTDERR: transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( ptr->irad>MaxAtomRadius ) BUILDSTDERR: ^~ BUILDSTDERR: transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: ptr->flag &= ~ExpandFlag; BUILDSTDERR: ^~~ BUILDSTDERR: command.c: In function 'ExecuteCommandOne': BUILDSTDERR: command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(ResetTok): for( i=0; i<10; i++ ) BUILDSTDERR: ^~~ BUILDSTDERR: command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: ReDrawFlag |= RFDials; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: transfor.c: In function 'ColourPointAttrib': BUILDSTDERR: command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: case(HelpTok): if( !HelpFileName ) BUILDSTDERR: ^~ BUILDSTDERR: transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int i,shade,nshade,result; BUILDSTDERR: ^~~~~~ BUILDSTDERR: command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( HelpInfo ) BUILDSTDERR: ^~ BUILDSTDERR: transfor.c: In function 'StructColourAttrib': BUILDSTDERR: transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( !Database ) BUILDSTDERR: ^~ BUILDSTDERR: transfor.c:3066:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: ColourBondNone(); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: command.c: In function 'ExecuteIPCCommand': BUILDSTDERR: command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: } else if( *ptr=='[' ) BUILDSTDERR: ^~ BUILDSTDERR: command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( len < MAXBUFFLEN-1 ) BUILDSTDERR: ^~ BUILDSTDERR: At top level: BUILDSTDERR: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] BUILDSTDERR: static int Define_Symbol(const char __far * string, const char __far * definition) { BUILDSTDERR: ^~~~~~~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o render.o render.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from render.c:189: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: render.c: In function 'DescribeAtom': BUILDSTDERR: render.c:2048:34: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: cur += sprintf(cur, " (%ld)", ptr->atm->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: render.c: In function 'PickAtoms': BUILDSTDERR: render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( !QAtom ) BUILDSTDERR: ^~ BUILDSTDERR: render.c:2079:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( PickMode==PickCentr && shift ) BUILDSTDERR: ^~ BUILDSTDERR: render.c:2111:33: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: cur += sprintf(cur, " %ld ", QAtom->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: } else BUILDSTDERR: ^~~~ BUILDSTDERR: render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BUILDSTDERR: QAtom->label = label; BUILDSTDERR: ^~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o repres.o repres.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from repres.c:234: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: transfor.c: In function 'ScaleColourMap': BUILDSTDERR: transfor.c:1702:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] BUILDSTDERR: { ScaleRef[i].r = 0; BUILDSTDERR: ~~~~~~~~^~~ BUILDSTDERR: transfor.c:1703:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] BUILDSTDERR: ScaleRef[i].g = 0; BUILDSTDERR: ~~~~~~~~^~~ BUILDSTDERR: transfor.c:1704:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] BUILDSTDERR: ScaleRef[i].b = 255; BUILDSTDERR: ~~~~~~~~^~~ BUILDSTDERR: transfor.c:1705:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] BUILDSTDERR: ScaleRef[i].shade = 0; BUILDSTDERR: ~~~~~~~~^~~ BUILDSTDERR: repres.c: In function 'CreateMonitor': BUILDSTDERR: transfor.c:1706:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] BUILDSTDERR: ScaleRef[i].col = 0; BUILDSTDERR: ~~~~~~~~^~~ BUILDSTDERR: repres.c:766:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: repres.c:768:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",src); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: repres.c:769:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",src,dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: repres.c:769:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",src,dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: repres.c: In function 'TestSolventDot': BUILDSTDERR: repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; BUILDSTDERR: ^~ BUILDSTDERR: repres.c: In function 'CalculateSurface': BUILDSTDERR: repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( !Database ) BUILDSTDERR: ^~ BUILDSTDERR: repres.c:1116:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: DotCount = density; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: repres.c: In function 'LoadDotsFile': BUILDSTDERR: repres.c:1208:31: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer,"%ld dots read from file\n",count); BUILDSTDERR: ~~^ ~~~~~ BUILDSTDERR: %d BUILDSTDERR: command.c: In function 'FetchFile': BUILDSTDERR: command.c:678:54: warning: '%s' directive writing up to 1023 bytes into a region of size 105 [-Wformat-overflow=] BUILDSTDERR: sprintf(buffer,"trap \"\" 13; gzip -cdq '%s' 2> /dev/null\n", BUILDSTDERR: ^~ BUILDSTDERR: DataFileName); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from command.c:118: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 39 and 1062 bytes into a destination of size 128 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: command.c:674:58: warning: '%s' directive writing up to 1023 bytes into a region of size 101 [-Wformat-overflow=] BUILDSTDERR: sprintf(buffer,"trap \"\" 13; uncompress -c '%s' 2> /dev/null\n", BUILDSTDERR: ^~ BUILDSTDERR: DataFileName); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from command.c:118: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 43 and 1066 bytes into a destination of size 128 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: command.c: In function 'ApplyMapShow': BUILDSTDERR: command.c:5365:123: warning: ' BUILDSTDERR: ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] BUILDSTDERR: sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", BUILDSTDERR: ^~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from command.c:118: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: command.c:5375:123: warning: ' BUILDSTDERR: ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] BUILDSTDERR: sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", BUILDSTDERR: ^~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from command.c:118: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o pixutils.o pixutils.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from pixutils.c:183: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: pixutils.c: In function 'ClipDashLine': BUILDSTDERR: pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Pixel c, ca, mid; BUILDSTDERR: ^~ BUILDSTDERR: pixutils.c: In function 'DrawCircle': BUILDSTDERR: pixutils.c:2606:6: warning: variable 'updown' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int updown, ifirst; BUILDSTDERR: ^~~~~~ BUILDSTDERR: pixutils.c: In function 'DrawCylinderCaps': BUILDSTDERR: pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int p, alts, altc; BUILDSTDERR: ^~~~ BUILDSTDERR: command.c: In function 'ExecuteCommandOne': BUILDSTDERR: command.c:5906:60: warning: '%g' directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] BUILDSTDERR: sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); BUILDSTDERR: ^~ BUILDSTDERR: command.c:5906:36: note: assuming directive output of 12 bytes BUILDSTDERR: sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from command.c:118: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 25 and 49 bytes into a destination of size 40 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o outfile.o outfile.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from outfile.c:170: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o script.o script.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from script.c:164: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: outfile.c: In function 'WriteVectSphere': BUILDSTDERR: outfile.c:1738:31: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%g %ld %ld ",radf,ptr->x,ptr->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1738:35: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%g %ld %ld ",radf,ptr->x,ptr->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c: In function 'WriteVectWire': BUILDSTDERR: outfile.c:1825:28: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld ",src->x,src->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1825:32: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld ",src->x,src->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1835:24: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld Wire\n",dst->x,dst->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1835:28: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld Wire\n",dst->x,dst->y); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c: In function 'WriteVectStick': BUILDSTDERR: outfile.c:1930:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1930:36: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1941:28: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1941:32: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1954:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1954:36: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1960:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1960:40: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1966:28: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1966:32: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",dst->x,dst->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1978:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:1978:36: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"%ld %ld %g ",src->x,src->y,radius); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c: In function 'WriteVectDots': BUILDSTDERR: outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int temp, tump; BUILDSTDERR: ^~~~ BUILDSTDERR: outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int temp, tump; BUILDSTDERR: ^~~~ BUILDSTDERR: outfile.c: In function 'WriteVectMapPoints': BUILDSTDERR: outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int temp, tump; BUILDSTDERR: ^~~~ BUILDSTDERR: outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int temp, tump; BUILDSTDERR: ^~~~ BUILDSTDERR: outfile.c: In function 'WriteVectLabels': BUILDSTDERR: outfile.c:2111:37: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"(%s) %ld %ld Label\n",buffer,aptr->x,aptr->y); BUILDSTDERR: ~~^ ~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c:2111:41: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"(%s) %ld %ld Label\n",buffer,aptr->x,aptr->y); BUILDSTDERR: ~~^ ~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: outfile.c: In function 'R3DSphere': BUILDSTDERR: outfile.c:2601:24: warning: variable 'z1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Real x1, y1, z1; /* coordinates after rotation and translation*/ BUILDSTDERR: ^~ BUILDSTDERR: outfile.c:2601:20: warning: variable 'y1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Real x1, y1, z1; /* coordinates after rotation and translation*/ BUILDSTDERR: ^~ BUILDSTDERR: outfile.c:2601:16: warning: variable 'x1' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register Real x1, y1, z1; /* coordinates after rotation and translation*/ BUILDSTDERR: ^~ BUILDSTDERR: script.c: In function 'WriteScriptSelectBond': BUILDSTDERR: script.c:801:39: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select (atomno=%ld) or (atomno==%ld)\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: src->serno, dst->serno); BUILDSTDERR: ~~~~~~~~~~ BUILDSTDERR: script.c:801:56: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select (atomno=%ld) or (atomno==%ld)\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: src->serno, dst->serno); BUILDSTDERR: ~~~~~~~~~~ BUILDSTDERR: script.c: In function 'WriteScriptRibbons': BUILDSTDERR: script.c:1100:51: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select atomno=%ld\n",aptr->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c: In function 'WriteScriptMonitors': BUILDSTDERR: script.c:1232:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"monitor %ld %ld\n",ptr->src->serno,ptr->dst->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1232:40: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { fprintf(OutFile,"monitor %ld %ld\n",ptr->src->serno,ptr->dst->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c: In function 'WriteScriptMaps': BUILDSTDERR: script.c:1313:55: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select atomno=%ld\n",mas->loserno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1315:56: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select atomno>=%ld and atomno>=%ld \n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: mas->loserno,mas->hiserno); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: script.c:1315:72: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select atomno>=%ld and atomno>=%ld \n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: mas->loserno,mas->hiserno); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: script.c:1335:67: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select selected or atomno=%ld\n",mas->loserno); BUILDSTDERR: ~~^ ~~~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1337:69: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select selected or (atomno>=%ld and atomno>=%ld) \n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: mas->loserno,mas->hiserno); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: script.c:1337:85: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"select selected or (atomno>=%ld and atomno>=%ld) \n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: mas->loserno,mas->hiserno); BUILDSTDERR: ~~~~~~~~~~~~ BUILDSTDERR: script.c: In function 'WriteScriptFile': BUILDSTDERR: script.c:1461:33: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"bond %ld %ld pick\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: brptr->BSrcAtom->serno, brptr->BDstAtom->serno); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: script.c:1461:37: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"bond %ld %ld pick\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: brptr->BSrcAtom->serno, brptr->BDstAtom->serno); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: outfile.c: In function 'R3DStrandRibbon': BUILDSTDERR: outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] BUILDSTDERR: register int qsx, qsy, qsz; BUILDSTDERR: ^~~ BUILDSTDERR: script.c:1491:35: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1491:39: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1491:43: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"centre [%ld,%ld,%ld]\n", CenX, CenY, -CenZ); BUILDSTDERR: ~~^ ~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c: In function 'OutputKinemageVector': BUILDSTDERR: script.c:1644:41: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else fprintf(OutFile,"{%.4s %ld}",ElemDesc[src->refno],src->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c:1667:37: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else fprintf(OutFile,"{%.4s %ld}",ElemDesc[dst->refno],dst->serno); BUILDSTDERR: ~~^ ~~~~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: script.c: In function 'WriteKinemageSpheres': BUILDSTDERR: script.c:1744:49: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else fprintf(OutFile,"{%.4s %ld}",ElemDesc[aptr->refno], BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: aptr->serno); BUILDSTDERR: ~~~~~~~~~~~ BUILDSTDERR: script.c: In function 'POVWriteHeader': BUILDSTDERR: script.c:2937:34: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"// OrigCX = %ld, OrigCY = %ld, OrigCZ = %ld, Scale = %g\n\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: OrigCX, OrigCY, OrigCZ, Scale); BUILDSTDERR: ~~~~~~ BUILDSTDERR: script.c:2937:48: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"// OrigCX = %ld, OrigCY = %ld, OrigCZ = %ld, Scale = %g\n\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: OrigCX, OrigCY, OrigCZ, Scale); BUILDSTDERR: ~~~~~~ BUILDSTDERR: script.c:2937:62: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: fprintf(OutFile,"// OrigCX = %ld, OrigCY = %ld, OrigCZ = %ld, Scale = %g\n\n", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: OrigCX, OrigCY, OrigCZ, Scale); BUILDSTDERR: ~~~~~~ BUILDSTDERR: At top level: BUILDSTDERR: script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] BUILDSTDERR: static void WriteVRMLLine( int src, int dst, int shade, int *flag ) BUILDSTDERR: ^~~~~~~~~~~~~ BUILDSTDERR: At top level: BUILDSTDERR: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] BUILDSTDERR: static void WriteVectMapBonds( void) { BUILDSTDERR: ^~~~~~~~~~~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o infile.o infile.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from infile.c:196: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: outfile.c: In function 'WriteR3DFile': BUILDSTDERR: outfile.c:2871:26: warning: '%s' directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] BUILDSTDERR: sprintf((char *)name,"%s",buffer); BUILDSTDERR: ^~ ~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from outfile.c:191: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 1 and 80 bytes into a destination of size 22 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: infile.c: In function 'ApplyBondInfo': BUILDSTDERR: infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext) BUILDSTDERR: ^~~ BUILDSTDERR: infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: if (AtomNum1) break; BUILDSTDERR: ^~ BUILDSTDERR: infile.c: In function 'LoadXYZMolecule': BUILDSTDERR: infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if( !FetchRecord(DataFile,Record) ) BUILDSTDERR: ^~ BUILDSTDERR: infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: xpos = ypos = zpos = 0.0; BUILDSTDERR: ^~~~ BUILDSTDERR: infile.c: In function 'LoadMol2Molecule': BUILDSTDERR: infile.c:1497:38: warning: format '%ld' expects argument of type 'long int *', but argument 4 has type 'Long *' {aka 'int *'} [-Wformat=] BUILDSTDERR: sscanf(Record,"%ld %ld %ld %s", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: &serno,&srcatm,&dstatm,type); BUILDSTDERR: ~~~~~~~ BUILDSTDERR: infile.c:1497:42: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'Long *' {aka 'int *'} [-Wformat=] BUILDSTDERR: sscanf(Record,"%ld %ld %ld %s", BUILDSTDERR: ~~^ BUILDSTDERR: %d BUILDSTDERR: &serno,&srcatm,&dstatm,type); BUILDSTDERR: ~~~~~~~ BUILDSTDERR: infile.c: In function 'LoadAlchemyMolecule': BUILDSTDERR: infile.c:1581:26: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'Long *' {aka 'int *'} [-Wformat=] BUILDSTDERR: sscanf(Record,"%ld %ld %ld",&serno,&srcatm,&dstatm); BUILDSTDERR: ~~^ ~~~~~~ BUILDSTDERR: %d BUILDSTDERR: infile.c:1581:30: warning: format '%ld' expects argument of type 'long int *', but argument 4 has type 'Long *' {aka 'int *'} [-Wformat=] BUILDSTDERR: sscanf(Record,"%ld %ld %ld",&serno,&srcatm,&dstatm); BUILDSTDERR: ~~^ ~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: infile.c:1581:34: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'Long *' {aka 'int *'} [-Wformat=] BUILDSTDERR: sscanf(Record,"%ld %ld %ld",&serno,&srcatm,&dstatm); BUILDSTDERR: ~~^ ~~~~~~~ BUILDSTDERR: %d BUILDSTDERR: infile.c: In function 'LoadCIFMolecule': BUILDSTDERR: infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if (!cif_datablock_name (cif, &dbname)) BUILDSTDERR: ^~ BUILDSTDERR: infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: Info.moleculename[55] = '\0'; BUILDSTDERR: ^~~~ BUILDSTDERR: infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int oNMRModel; BUILDSTDERR: ^~~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o tokens.o tokens.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/string.h:26, BUILDSTDERR: from tokens.c:194: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o cif_fract.o cif_fract.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from cif_fract.c:197: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o cif.o cif.c gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o cif_ctonum.o cif_ctonum.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from cif.c:278: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: cif_ctonum.c:198: warning: "_USE_RASMOL_H_" redefined BUILDSTDERR: #define _USE_RASMOL_H_ BUILDSTDERR: BUILDSTDERR: : note: this is the location of the previous definition BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from cif_ctonum.c:200: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o cif_stx.o cif_stx.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from cif_stx.c:227: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o multiple.o multiple.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from multiple.c:225: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o vector.o vector.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from vector.c:159: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o wbrotate.o wbrotate.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from rasmol.h:165, BUILDSTDERR: from wbrotate.c:201: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o langsel_unix.o langsel_unix.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from langsel_unix.c:114: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: wbrotate.c: In function 'RemoveBond': BUILDSTDERR: wbrotate.c:366:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",ndst); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:368:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",nsrc); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:369:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",nsrc,ndst); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:369:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",nsrc,ndst); BUILDSTDERR: ~~^ ~~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c: In function 'CreateBondAxis': BUILDSTDERR: wbrotate.c:568:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:570:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: { sprintf(buffer," %ld",src); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:571:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",src,dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: wbrotate.c:571:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Long' {aka 'int'} [-Wformat=] BUILDSTDERR: } else sprintf(buffer,"s %ld and %ld",src,dst); BUILDSTDERR: ~~^ ~~~ BUILDSTDERR: %d BUILDSTDERR: langsel_unix.c: In function 'SwitchLang': BUILDSTDERR: langsel_unix.c:2347:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if (Interactive) BUILDSTDERR: ^~ BUILDSTDERR: langsel_unix.c:2349:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: if (Language != lang) { BUILDSTDERR: ^~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o maps.o maps.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from maps.c:81: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: maps.c: In function 'SaveMapFile': BUILDSTDERR: maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: maps.c: In function 'LoadCBFMapFile': BUILDSTDERR: maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase; BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double fcmap_xbase, fcmap_ybase, fcmap_zbase; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase; BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double ocmap_xbase, ocmap_ybase, ocmap_zbase; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Long mapmask_xbase, mapmask_ybase, mapmask_zbase; BUILDSTDERR: ^~~~~~~~~~~~~ BUILDSTDERR: maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Long map_xbase, map_ybase, map_zbase; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: maps.c: In function 'LoadCCP4MapFile': BUILDSTDERR: maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int rawelsize; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: In file included from maps.c:96: BUILDSTDERR: maps.c: In function 'map_points': BUILDSTDERR: maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] BUILDSTDERR: MapPointm2o(map,mp,gradient); BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: maps.h:187:10: note: in definition of macro 'MapPointm2o' BUILDSTDERR: if (gradient) { \ BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] BUILDSTDERR: MapPointm2o(map,mp,gradient); BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: maps.h:187:10: note: in definition of macro 'MapPointm2o' BUILDSTDERR: if (gradient) { \ BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Long koffsets[3][2]; /* The offsets back to the prior cells */ BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */ BUILDSTDERR: ^~~~~ BUILDSTDERR: maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int haveedges[3], havefaces[3], havebody; BUILDSTDERR: ^~~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -Dlinux -D__riscv -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -DXFORMSLIB -I/usr/include/cbf -I/usr/include -I/usr/include -I/usr/include -I/usr/include -c -o x11win.o x11win.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdlib.h:25, BUILDSTDERR: from x11win.c:232: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: x11win.c: In function 'RasLoadQueryFontSet.constprop': BUILDSTDERR: x11win.c:758:59: warning: '%s' directive writing up to 254 bytes into a region of size 222 [-Wformat-overflow=] BUILDSTDERR: sprintf(buffer, "Missing charsets in MenuFontSet (%s) creation.\n", fontset_name); BUILDSTDERR: ^~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from x11win.c:235: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 46 and 300 bytes into a destination of size 255 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: maps.c: In function 'SaveMapFile': BUILDSTDERR: maps.c:394:51: warning: 'mapinfo' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cbf_failnez (cbf_set_value(cbf,mapinfo->MapFile)) BUILDSTDERR: ^~ rm -f rasmol gcc -o rasmol -O2 -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -L/usr/lib64 rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -L/usr/lib64 -lcbf -L/usr/lib64 -lCQRlib -L/usr/lib64 -lCVector -L/usr/lib64 -lCNearTree -lXpm -L/usr/lib64 -lforms ln -s ../doc/rasmol.1 rasmol.man rm -f rasmol._man if test -z "" ; then \ cd `dirname rasmol` && \ ln -s `basename rasmol.man` `basename rasmol._man`; \ else \ cpp -undef -traditional -D__apploaddir__=/usr/share/X11/app-defaults -D__appmansuffix__=1x -D__filemansuffix__=5x -D__libmansuffix__=3x -D__miscmansuffix__=7 -D__drivermansuffix__=4 -D__adminmansuffix__=8 -D__projectroot__=/usr -D__xconfigfile__=xorg.conf -D__xconfigdir__=/usr/lib/X11 -D__xlogfile__=Xorg -D__xservername__=Xorg -D__xorgversion__="\"`echo 7 7 0 | sed -e 's/ /./g' -e 's/^/Version\\\ /'`\" \"X Version 11\"" -D__vendorversion__="`echo 7 7 0 | sed -e 's/ /./g' -e 's/^/Version\\\ /'` X.Org" \ < rasmol.man | sed -e '/^# *[0-9][0-9]* *.*$/d' -e '/^#line *[0-9][0-9]* *.*$/d' -e '/^[ ]*XCOMM$/s/XCOMM/#/' -e '/^[ ]*XCOMM[^a-zA-Z0-9_]/s/XCOMM/#/' -e '/^[ ]*XHASH/s/XHASH/#/' -e '/\@\@$/s/\@\@$/\\/' >rasmol._man; \ fi ~/build/BUILD/RasMol-2.7.5.2 + popd + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.OvG1Kg + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64 + cd RasMol-2.7.5.2 + make -C src DESTDIR=/builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64 install install.man make: Entering directory '/builddir/build/BUILD/RasMol-2.7.5.2/src' + mkdir -p /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/bin install -c rasmol /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/bin/rasmol + mkdir -p /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/rasmol/ install -c -m 0444 ../doc/rasmol.hlp /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/rasmol/ install -c -m 0444 ../data/1crn.pdb /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/rasmol/ install -c -m 0444 ../data/3cro.pdb /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/rasmol/ install in . done + mkdir -p /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/man/man1 install -c -m 0444 rasmol._man /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/man/man1/rasmol.1x install.man in . done make: Leaving directory '/builddir/build/BUILD/RasMol-2.7.5.2/src' + mv /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/bin/rasmol /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/bin/rasmolb + install -D -p -m 755 /builddir/build/SOURCES/rasmol /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/bin/rasmol + install -D -p -m 755 src/grasmol /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/bin/grasmol + install -p -d /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/rasmol/data + cp data/1crn.pdb data/1gpd.pdb.gz data/1ldb.pdb.gz data/1ldm.pdb.gz data/3cro.pdb data/4hir.ent.gz data/4ins.CIF data/7lyz.pdb data/IUCR9800028.cif data/asprin.alc data/pdb2mcg.ent /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/rasmol/data/ + install -D -p -m 644 /builddir/build/SOURCES/rasmol.png /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/icons/hicolor/48x48/apps/rasmol.png + desktop-file-install -m 644 --dir=/builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/applications/ /builddir/build/SOURCES/rasmol.desktop + desktop-file-install -m 644 --dir=/builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/applications/ /builddir/build/SOURCES/grasmol.desktop + rm -f /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/rasmol/1crn.pdb /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/rasmol/3cro.pdb + mv doc doc_prep + mkdir doc + mv doc_prep/manualA4.pdf doc_prep/manualUS.pdf doc_prep/refcardA4.pdf doc_prep/refcardUS.pdf doc_prep/INSTALL.html doc_prep/NOTICE.html doc_prep/README.html doc_prep/esrasmol27.html doc_prep/esrasmol2721.html doc_prep/index.html doc_prep/rasmol.html doc_prep/Licenses.txt doc_prep/README doc_prep/itrasmol.hlp doc_prep/itrasmol271.hlp doc_prep/itrasmol2721.hlp doc_prep/rasmol.hlp doc_prep/raswin.hlp doc_prep/RASLIC doc/ + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 2.7.5.2-13.fc29 --unique-debug-suffix -2.7.5.2-13.fc29.riscv64 --unique-debug-src-base rasmol-2.7.5.2-13.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/RasMol-2.7.5.2 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/bin/rasmolb explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/bin/grasmol extracting debug info from /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/bin/rasmolb extracting debug info from /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/bin/grasmol /usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. BUILDSTDERR: cpio: src/gtkui.h: Cannot stat: No such file or directory BUILDSTDERR: 4824 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/rasmol from /bin/sh to #!/usr/bin/sh Processing files: rasmol-2.7.5.2-13.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.q8wnjF + umask 022 + cd /builddir/build/BUILD + cd RasMol-2.7.5.2 + DOCDIR=/builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol + cp -pr ChangeLog /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol + cp -pr GPL /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol + cp -pr NOTICE /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol + cp -pr RASLIC /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol + cp -pr README.txt /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol + exit 0 Provides: application() application(rasmol.desktop) rasmol = 2.7.5.2-13.fc29 rasmol(riscv-64) = 2.7.5.2-13.fc29 Requires(interp): /bin/sh /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(postun): /bin/sh Requires(posttrans): /bin/sh Requires: /usr/bin/sh ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libCNearTree.so.7()(64bit) libCQRlib.so.2()(64bit) libCVector-1.0.3.so.2()(64bit) libX11.so.6()(64bit) libXext.so.6()(64bit) libXi.so.6()(64bit) libXpm.so.4()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcbf.so.0()(64bit) libforms.so.2()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) rtld(GNU_HASH) Processing files: rasmol-gtk-2.7.5.2-13.fc29.riscv64 Provides: application() application(grasmol.desktop) rasmol-gtk = 2.7.5.2-13.fc29 rasmol-gtk(riscv-64) = 2.7.5.2-13.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libCNearTree.so.7()(64bit) libCQRlib.so.2()(64bit) libCVector-1.0.3.so.2()(64bit) libX11.so.6()(64bit) libXext.so.6()(64bit) libXi.so.6()(64bit) libatk-1.0.so.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcairo.so.2()(64bit) libcbf.so.0()(64bit) libfontconfig.so.1()(64bit) libfreetype.so.6()(64bit) libgdk-x11-2.0.so.0()(64bit) libgdk_pixbuf-2.0.so.0()(64bit) libgio-2.0.so.0()(64bit) libglib-2.0.so.0()(64bit) libgobject-2.0.so.0()(64bit) libgtk-x11-2.0.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpangoft2-1.0.so.0()(64bit) libvte.so.9()(64bit) rtld(GNU_HASH) Processing files: rasmol-doc-2.7.5.2-13.fc29.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.whkDp5 + umask 022 + cd /builddir/build/BUILD + cd RasMol-2.7.5.2 + DOCDIR=/builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr doc /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr html_graphics /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr ChangeLog.html /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr ChangeLog.txt /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr GPL /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr NOTICE /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr PROJECTS /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr RASLIC /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr README.html /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr README.txt /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr TODO.html /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr TODO.txt /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + cp -pr history.html /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64/usr/share/doc/rasmol-doc + exit 0 Provides: rasmol-doc = 2.7.5.2-13.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: rasmol-debugsource-2.7.5.2-13.fc29.riscv64 Provides: rasmol-debugsource = 2.7.5.2-13.fc29 rasmol-debugsource(riscv-64) = 2.7.5.2-13.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: rasmol-debuginfo-2.7.5.2-13.fc29.riscv64 Provides: debuginfo(build-id) = ed1423e2db94ce2b1f1c34c773b8049a0e1140a7 rasmol-debuginfo = 2.7.5.2-13.fc29 rasmol-debuginfo(riscv-64) = 2.7.5.2-13.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rasmol-debugsource(riscv-64) = 2.7.5.2-13.fc29 Processing files: rasmol-gtk-debuginfo-2.7.5.2-13.fc29.riscv64 Provides: debuginfo(build-id) = 3cc451fb05c2056e608426589e17ffe773858502 rasmol-gtk-debuginfo = 2.7.5.2-13.fc29 rasmol-gtk-debuginfo(riscv-64) = 2.7.5.2-13.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rasmol-debugsource(riscv-64) = 2.7.5.2-13.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64 Wrote: /builddir/build/RPMS/rasmol-2.7.5.2-13.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/rasmol-gtk-2.7.5.2-13.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/rasmol-doc-2.7.5.2-13.fc29.noarch.rpm Wrote: /builddir/build/RPMS/rasmol-debugsource-2.7.5.2-13.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/rasmol-debuginfo-2.7.5.2-13.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/rasmol-gtk-debuginfo-2.7.5.2-13.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Pr45UX + umask 022 + cd /builddir/build/BUILD + cd RasMol-2.7.5.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/rasmol-2.7.5.2-13.fc29.riscv64 + exit 0 Child return code was: 0