PyBIDS
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PyBIDS
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Index
Index
_
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A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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P
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R
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S
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T
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U
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W
_
__init__() (Analysis method)
(AnalysisNode method)
(BIDSDataFile method)
(BIDSFile method)
(BIDSJSONFile method)
(BIDSLayout method)
(BIDSLayoutIndexer method)
(BIDSReport method)
(BIDSRunVariableCollection method)
(BIDSValidator method)
(BIDSVariableCollection method)
(Config method)
(DenseRunVariable method)
(Entity method)
(SimpleVariable method)
(SparseRunVariable method)
(Step method)
(Tag method)
A
add_config_paths() (in module bids.layout)
add_derivatives() (BIDSLayout method)
add_variable() (Node method)
(RunNode method)
Analysis (class in bids.analysis)
AnalysisNode (class in bids.analysis.analysis)
apply() (BIDSVariable method)
(DenseRunVariable method)
,
[1]
(SimpleVariable method)
,
[1]
(SparseRunVariable method)
,
[1]
apply_transformations() (in module bids.analysis.analysis)
auto_model() (in module bids.analysis)
B
bids.reports.utils (module)
bids.variables.entities (module)
bids.variables.io (module)
bids.variables.kollekshuns (module)
bids.variables.variables (module)
BIDSDataFile (class in bids.layout)
BIDSFile (class in bids.layout)
BIDSJSONFile (class in bids.layout)
BIDSLayout (class in bids.layout)
BIDSLayoutIndexer (class in bids.layout.index)
BIDSReport (class in bids.reports)
BIDSRunVariableCollection (class in bids.variables)
(class in bids.variables.kollekshuns)
BIDSValidator (class in bids.layout)
BIDSVariable (class in bids.variables.variables)
BIDSVariableCollection (class in bids.variables)
(class in bids.variables.kollekshuns)
build_path() (BIDSLayout method)
C
clone() (BIDSLayout method)
(BIDSRunVariableCollection method)
,
[1]
(BIDSVariable method)
(BIDSVariableCollection method)
,
[1]
(DenseRunVariable method)
,
[1]
(SimpleVariable method)
,
[1]
(SparseRunVariable method)
,
[1]
Config (class in bids.layout)
convert_JSON() (in module bids.utils)
copy() (BIDSDataFile method)
(BIDSFile method)
(BIDSJSONFile method)
copy_files() (BIDSLayout method)
count() (Entity method)
(RunInfo method)
create_node() (NodeIndex method)
D
DenseRunVariable (class in bids.variables)
(class in bids.variables.variables)
duration (RunInfo attribute)
E
entities (RunInfo attribute)
entities() (BIDSLayout property)
Entity (class in bids.layout)
F
files() (BIDSLayout property)
filter() (BIDSVariable method)
(DenseRunVariable method)
,
[1]
(SimpleVariable method)
,
[1]
(SparseRunVariable method)
,
[1]
from_df() (BIDSRunVariableCollection class method)
,
[1]
(BIDSVariableCollection class method)
,
[1]
from_file() (in module bids.config)
G
generate() (BIDSReport method)
get() (BIDSLayout method)
get_associations() (BIDSDataFile method)
(BIDSFile method)
(BIDSJSONFile method)
get_bval() (BIDSLayout method)
get_bvec() (BIDSLayout method)
get_collections() (BIDSLayout method)
(NodeIndex method)
get_contrasts() (AnalysisNode method)
(Step method)
get_dataset_description() (BIDSLayout method)
get_design_matrix() (AnalysisNode method)
(Step method)
get_df() (BIDSDataFile method)
get_dict() (BIDSJSONFile method)
get_duration() (SparseRunVariable method)
,
[1]
get_entities() (BIDSDataFile method)
(BIDSFile method)
(BIDSJSONFile method)
(BIDSLayout method)
get_fieldmap() (BIDSLayout method)
get_file() (BIDSLayout method)
get_files() (BIDSLayout method)
get_grouper() (BIDSVariable method)
(DenseRunVariable method)
,
[1]
(SimpleVariable method)
,
[1]
(SparseRunVariable method)
,
[1]
get_json() (BIDSJSONFile method)
get_metadata() (BIDSDataFile method)
(BIDSFile method)
(BIDSJSONFile method)
(BIDSLayout method)
get_nearest() (BIDSLayout method)
get_nodes() (NodeIndex method)
get_option() (in module bids.config)
get_or_create_node() (NodeIndex method)
get_path_values() (BIDSValidator method)
get_seqstr() (in module bids.reports.utils)
get_sizestr() (in module bids.reports.utils)
get_slice_info() (in module bids.reports.utils)
get_tr() (BIDSLayout method)
I
image (RunInfo attribute)
index() (RunInfo method)
index_files() (BIDSLayoutIndexer method)
index_metadata() (BIDSLayoutIndexer method)
is_associated_data() (BIDSValidator method)
is_bids() (BIDSValidator method)
is_file() (BIDSValidator method)
is_phenotypic() (BIDSValidator method)
is_session_level() (BIDSValidator method)
is_subject_level() (BIDSValidator method)
is_top_level() (BIDSValidator method)
L
list_to_str() (in module bids.reports.utils)
listify() (in module bids.utils)
load() (BIDSLayout class method)
(Config class method)
load_variables() (in module bids.variables)
(in module bids.variables.io)
M
make_bidsfile() (in module bids.utils)
match_file() (Entity method)
match_variables() (BIDSRunVariableCollection method)
,
[1]
(BIDSVariableCollection method)
,
[1]
matches_entities() (AnalysisNode method)
(BIDSRunVariableCollection method)
,
[1]
(BIDSVariable method)
(BIDSVariableCollection method)
,
[1]
(DenseRunVariable method)
,
[1]
(in module bids.utils)
(SimpleVariable method)
,
[1]
(SparseRunVariable method)
,
[1]
merge() (BIDSVariable class method)
(DenseRunVariable class method)
,
[1]
(SimpleVariable class method)
,
[1]
(SparseRunVariable class method)
,
[1]
merge_collections() (in module bids.variables)
(in module bids.variables.kollekshuns)
merge_variables() (BIDSRunVariableCollection static method)
,
[1]
(BIDSVariableCollection static method)
,
[1]
(in module bids.variables)
(in module bids.variables.variables)
N
Node (class in bids.variables.entities)
NodeIndex (class in bids.variables.entities)
num_to_str() (in module bids.reports.utils)
P
parse_file_entities() (BIDSLayout method)
(in module bids.layout)
R
reminder() (in module bids.reports.utils)
remove_duplicates() (in module bids.reports.utils)
resample() (BIDSRunVariableCollection method)
,
[1]
(DenseRunVariable method)
,
[1]
reset_options() (in module bids.config)
RunInfo (class in bids.variables.entities)
RunInfo_ (in module bids.variables.entities)
RunNode (class in bids.variables.entities)
S
save() (BIDSLayout method)
select_rows() (SimpleVariable method)
,
[1]
(SparseRunVariable method)
,
[1]
set_option() (in module bids.config)
set_options() (in module bids.config)
setup() (Analysis method)
(Step method)
SimpleVariable (class in bids.variables)
(class in bids.variables.variables)
SparseRunVariable (class in bids.variables)
(class in bids.variables.variables)
split() (DenseRunVariable method)
,
[1]
(SimpleVariable method)
,
[1]
(SparseRunVariable method)
,
[1]
Step (class in bids.analysis.analysis)
T
Tag (class in bids.layout)
to_dense() (SparseRunVariable method)
,
[1]
to_df() (BIDSLayout method)
(BIDSRunVariableCollection method)
,
[1]
(BIDSVariable method)
(BIDSVariableCollection method)
,
[1]
(DenseRunVariable method)
,
[1]
(SimpleVariable method)
,
[1]
(SparseRunVariable method)
,
[1]
tr (RunInfo attribute)
U
unique() (Entity method)
W
write_contents_to_file() (BIDSLayout method)