Package | Description |
---|---|
neurord |
Stochastic diffusion segments of dendrits with spines.
|
neurord.model |
These classes represent the model as it is stored in the input files.
|
neurord.numeric | |
neurord.numeric.grid |
SteppedStochasticCalc contains the particle number based calculation with fixed timesteps
where a number of diffusion events and reactions is generated for each reaction, volume and
volume-volume connection at each timestep.
|
neurord.numeric.pool |
These are deterministic calculations for a single mixed pool.
|
neurord.reduce |
Modifier and Type | Method and Description |
---|---|
BaseCalc |
SDCalcType.getCalc(int trial,
SDRun sdr) |
Constructor and Description |
---|
SDCalc(SDRun sdr,
File output) |
Modifier and Type | Method and Description |
---|---|
protected static SDRun |
SDRun.deserialize(File filename,
Long seed) |
protected static SDRun |
SDRun.deserialize(String xml,
Long seed) |
static SDRun |
SDRun.loadFromFile(File model_file,
File ic_file,
int trial,
double population_from_time) |
Modifier and Type | Field and Description |
---|---|
protected SDRun |
BaseCalc.sdRun |
Modifier and Type | Method and Description |
---|---|
SDRun |
BaseCalc.getSource() |
Constructor and Description |
---|
BaseCalc(int trial,
SDRun sdRun) |
StaticCalc(int trial,
SDRun sdr) |
Modifier and Type | Method and Description |
---|---|
SDRun |
IGridCalc.getSource() |
Modifier and Type | Method and Description |
---|---|
protected void |
StochasticGridCalc.initPopulation(int[][] counts,
SDRun sdrun) |
Constructor and Description |
---|
AdaptiveGridCalc(int trial,
SDRun sdm) |
DeterministicGridCalc(int trial,
SDRun sdrun) |
GridCalc(int trial,
SDRun sdRun) |
SteppedStochasticGridCalc(int trial,
SDRun sdm) |
StochasticGridCalc(int trial,
SDRun sdm) |
Constructor and Description |
---|
DeterministicPoolCalc(int trial,
SDRun sdm) |
ForwardEulerPoolCalc(int trial,
SDRun sdm) |
ForwardExponentialPoolCalc(int trial,
SDRun sdm) |
ImplicitEulerPoolCalc(int trial,
SDRun sdm) |
RungeKutta4PoolCalc(int trial,
SDRun sdm) |
SemiImplicitEulerPoolCalc(int trial,
SDRun sdm) |
Constructor and Description |
---|
Reducer(SDRun sdModel,
SDState sdState) |
Copyright © 2020. All rights reserved.