protected class ResultWriterHDF5.Trial extends Object
Modifier and Type | Field and Description |
---|---|
protected hdf.object.h5.H5ScalarDS |
event_statistics |
protected hdf.object.Group |
events |
protected List<IGridCalc.Happening> |
events_cache |
protected hdf.object.h5.H5ScalarDS |
events_event |
protected hdf.object.h5.H5ScalarDS |
events_extent |
protected hdf.object.h5.H5ScalarDS |
events_kind |
protected hdf.object.h5.H5ScalarDS |
events_original |
protected hdf.object.h5.H5ScalarDS |
events_time |
protected hdf.object.h5.H5ScalarDS |
events_waited |
protected hdf.object.Group |
group |
protected List<ResultWriterHDF5.PopulationOutput> |
populations |
protected hdf.object.Group |
sim |
protected hdf.object.h5.H5ScalarDS |
statistics_times |
Modifier | Constructor and Description |
---|---|
protected |
Trial(hdf.object.Group group) |
Modifier and Type | Method and Description |
---|---|
protected void |
_writeGrid(VolumeGrid vgrid,
double startTime,
IGridCalc source) |
protected void |
_writeOutput(int i,
double time,
IGridCalc source) |
protected void |
close(IGridCalc source) |
protected void |
flushEvents(double time,
boolean all) |
protected void |
initEvents() |
protected void |
initEventStatistics(boolean periodic,
IGridCalc source,
int expected) |
protected boolean |
initPopulation(int i,
IGridCalc source) |
protected void |
writeEventData(hdf.object.Group parent,
IGridCalc source) |
protected void |
writeEvents(double time,
IGridCalc source) |
protected void |
writeEventStatistics(double time,
IGridCalc source) |
protected void |
writeOutputInfo(hdf.object.Group parent) |
protected void |
writeOutputInfo(hdf.object.Group parent,
String identifier,
int[] which,
int[] elements) |
protected void |
writePopulation(int i,
double time,
IGridCalc source) |
protected void |
writeReactionData(hdf.object.Group parent,
IGridCalc source) |
protected void |
writeRegionLabels(hdf.object.Group parent,
IGridCalc source) |
protected void |
writeSimulationData(IGridCalc source) |
protected void |
writeStimulationData(hdf.object.Group parent,
IGridCalc source) |
protected final hdf.object.Group group
protected final hdf.object.Group sim
protected List<ResultWriterHDF5.PopulationOutput> populations
protected hdf.object.h5.H5ScalarDS event_statistics
protected hdf.object.h5.H5ScalarDS statistics_times
protected hdf.object.Group events
protected List<IGridCalc.Happening> events_cache
protected hdf.object.h5.H5ScalarDS events_event
protected hdf.object.h5.H5ScalarDS events_kind
protected hdf.object.h5.H5ScalarDS events_extent
protected hdf.object.h5.H5ScalarDS events_time
protected hdf.object.h5.H5ScalarDS events_waited
protected hdf.object.h5.H5ScalarDS events_original
protected void _writeGrid(VolumeGrid vgrid, double startTime, IGridCalc source) throws Exception
Exception
protected void writeSimulationData(IGridCalc source) throws Exception
Exception
protected void writeRegionLabels(hdf.object.Group parent, IGridCalc source) throws Exception
Exception
protected void writeStimulationData(hdf.object.Group parent, IGridCalc source) throws Exception
Exception
protected void writeReactionData(hdf.object.Group parent, IGridCalc source) throws Exception
Exception
protected void writeEventData(hdf.object.Group parent, IGridCalc source) throws Exception
Exception
protected void writeOutputInfo(hdf.object.Group parent, String identifier, int[] which, int[] elements) throws Exception
Exception
protected void writeOutputInfo(hdf.object.Group parent) throws Exception
Exception
protected void _writeOutput(int i, double time, IGridCalc source) throws Exception
Exception
protected boolean initPopulation(int i, IGridCalc source) throws Exception
Exception
protected void writePopulation(int i, double time, IGridCalc source) throws Exception
Exception
protected void initEventStatistics(boolean periodic, IGridCalc source, int expected) throws Exception
Exception
protected void writeEventStatistics(double time, IGridCalc source) throws Exception
Exception
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