Mock Version: 2.15 Mock Version: 2.15 Mock Version: 2.15 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/f38-build-714659-94818/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1674172800 Wrote: /builddir/build/SRPMS/nco-5.1.4-1.fc38.src.rpm RPM build warnings: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/f38-build-714659-94818/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.KR9PfX + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf nco-5.1.4 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/nco-5.1.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd nco-5.1.4 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (nco-install_C_headers.patch):' Patch #0 (nco-install_C_headers.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .install_C_headers --fuzz=0 patching file src/nco/Makefile.in Hunk #1 succeeded at 782 (offset 15 lines). + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.3CyL56 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd nco-5.1.4 + export CPPFLAGS=-I/usr/include/udunits2 + CPPFLAGS=-I/usr/include/udunits2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2023-01-10 13:31:53.000000000 -0500 +++ ./configure 2023-05-20 03:38:38.080545820 -0400 @@ -1952,7 +1952,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2023-05-20 03:38:38.080545820 -0400 +++ ./configure 2023-05-20 03:38:38.270546023 -0400 @@ -8648,7 +8648,7 @@ # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. -lt_cv_sys_global_symbol_to_cdecl="sed -n"\ +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" $lt_cdecl_hook\ " -e 's/^T .* \(.*\)$/extern int \1();/p'"\ " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'" @@ -22691,7 +22691,7 @@ compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`' GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`' -lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`' +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`' + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./autobld/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./autobld/config.sub ++ basename ./autobld/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./autobld/config.sub '/usr/lib/rpm/redhat/config.sub' -> './autobld/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./autobld/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./autobld/config.guess ++ basename ./autobld/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./autobld/config.guess '/usr/lib/rpm/redhat/config.guess' -> './autobld/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./autobld/ltmain.sh ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=riscv64-redhat-linux-gnu --host=riscv64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info HAVE_ANTLR=yes --disable-dependency-tracking --includedir=/usr/include/nco checking build system type... riscv64-redhat-linux-gnu checking host system type... riscv64-redhat-linux-gnu checking target system type... riscv64-redhat-linux-gnu ./configure: line 3537: git: command not found checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for riscv64-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking whether yytext is a pointer... yes checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert riscv64-redhat-linux-gnu file names to riscv64-redhat-linux-gnu format... func_convert_file_noop checking how to convert riscv64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for riscv64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for riscv64-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for riscv64-redhat-linux-gnu-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for riscv64-redhat-linux-gnu-strip... no checking for strip... strip checking for riscv64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 8654: -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for riscv64-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for working strtod... yes checking for canonicalize_file_name... yes checking for creat... yes checking for floor... no checking for gethostname... yes checking for getpagesize... yes checking for getrusage... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkstemp... yes checking for pow... no checking for readlink... yes checking for realpath... yes checking for regcomp... yes checking for setlocale... yes checking for sqrt... no checking for strchr... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for egrep... (cached) /usr/bin/grep -E checking for fcntl.h... yes checking for getopt.h... yes checking for libintl.h... yes checking for limits.h... yes checking for locale.h... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for cstdlib... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for ptrdiff_t... yes checking size of int*... 8 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no ################################# # Test for netCDF # ################################ checking for netcdf.h... yes checking for nc_open in -lnetcdf... yes ################################# # Test for netCDF4 support # ################################# checking for gcc options needed to detect all undeclared functions... none needed checking whether NC_CHUNKED is declared... yes configure: netcdf.h contains netCDF4 definitions checking for nc_def_var_chunking in -lnetcdf... yes configure: Good news: Simple program compiles and links to netCDF4 library checking for netcdf_mem.h... yes checking for gcc option to support OpenMP... -fopenmp configure: OpenMP support enabled Beginning generic tests for DAP support Testing for DAP-netCDF support (is DAP in libnetcdf.a?)... checking for daperror in -lnetcdf... yes configure: DAP support enabled checking for getopt_long... yes checking for sinf in -lsunmath... no checking for gettext in -lintl... no checking for res_init in -lresolv... no checking for main in -lsocket... no checking for main in -lthread... no checking for nco_open in -lnco... no checking for nc_inq_format... yes checking for nc_inq_path... yes checking for nc_set_log_level... yes checking for nc_rename_grp... yes checking for getopt... yes checking for getopt_long... (cached) yes checking for atan2... no checking for acosf... no checking for asinf... no checking for atanf... no checking for atan2f... no checking for cosf... no checking for expf... no checking for fabsf... no checking for fmodf... no checking for log10f... no checking for logf... no checking for powf... no checking for sinf... no checking for sqrtf... no checking for tanf... no checking for erff... no checking for erfcf... no checking for gammaf... no checking for acoshf... no checking for asinhf... no checking for atanhf... no checking for coshf... no checking for sinhf... no checking for tanhf... no checking for ceilf... no checking for floorf... no checking for nearbyint... no checking for rint... no checking for round... no checking for trunc... no checking for nearbyintf... no checking for rintf... no checking for roundf... no checking for truncf... no checking for getopt_long... (cached) yes checking for strdup... yes checking for strcasecmp... yes checking for strsep... yes checking for strcasestr... yes checking for htonl... yes checking for htons... yes checking for ntohl... yes checking for ntohs... yes checking for __builtin_bswap16... no checking for __builtin_bswap32... no checking for __builtin_bswap64... no ########################################################## # Sorting out MacOS build parameters # ########################################################## ################################# # Testing for ANTLR support # ################################# checking for runantlr... yes configure: antlr library was found checking for antlr/CommonToken.hpp... yes INFO: ANTLR development support found---will build nco++ directory and ncap2 checking whether NCO C++ interface library libnco_c++ should be built... no ######################################## # Testing for GSL support # ######################################## configure: These GSL library and header tests must succeed for GSL support: checking for gsl_sf_gamma_inc in -lgsl... yes checking for /usr/include/gsl/gsl_sf_gamma.h... yes configure: GSL support enabled ######################################## # Testing for CCR support # ######################################## checking where to put HDF5 plugins... . checking whether Community Codec Repository library should be used... no checking for regex.h... yes checking for sys/types.h... (cached) yes checking for regexec... yes checking for regcomp... (cached) yes checking for regfree... yes ######################################## # Testing for UDUNITS2 support # ######################################## checking for udunits2.h... yes checking for library containing ut_parse... -ludunits2 configure: UDUnits2 support enabled checking for ncgen... /usr/bin/ncgen configure: Creating sample netCDF data files for self-tests ############################### # Require Shared Libs? # ############################### checking for makeinfo... yes MAKEINFO_VERSION=7.0.2 configure: Documentation support enabled checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/nco/Makefile config.status: creating man/Makefile config.status: creating src/nco++/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Parameters: AR_FLAGS............. cru CC................... gcc CFLAGS............... -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 CPP.................. gcc -E CPPFLAGS............. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include CXX.................. g++ CXXFLAGS............. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ENABLE_CCR........... no ENABLE_DAP........... yes ENABLE_GSL........... yes ENABLE_NETCDF4....... yes ENABLE_OPENMP........ yes ENABLE_UDUNITS2...... yes GSL_ROOT............. /usr HAVE_ANTLR........... yes HAVE_MAKEINFO........ yes HAVE_NETCDF4_H....... yes HDF5_PLUGIN_PATH..... . HOST................. HOSTNAME............. unmatchedbuild11 LDFLAGS.............. -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes LIBS................. -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm NETCDF_ROOT.......... /usr OPENMP_CFLAGS........ -fopenmp host................. riscv64-redhat-linux-gnu install prefix ...... /usr ******************************************************************* Configuration complete. You are now ready to run 'make'. Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). If the build fails, please examine the file 'configure.eg' in the top-level NCO directory. It contains examples known to build NCO for various platforms and compilers. ******************************************************************* + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/make all-recursive Making all in data make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' /builddir/build/BUILD/nco-5.1.4/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: /builddir/build/BUILD/nco-5.1.4/src/nco/ncks: No such file or directory make[2]: [Makefile:585: in_4c.nc] Error 127 (ignored) make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' /usr/bin/ncgen -o big.nc big.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' /usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' /usr/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' /usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' /usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' /usr/bin/ncgen -k netCDF-4 -o split.nc split.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' /usr/bin/ncgen -k netCDF-4 -o ref_utf8.nc ref_utf8.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' /usr/bin/ncgen -k netCDF-4 -lb -o "file://in_zarr4#mode=nczarr,file" in_zarr4.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' ncgen: NetCDF: NCZarr error (../../ncgen/genbin.c:genbin_netcdf:168) make[2]: [Makefile:657: in_zarr4] Error 1 (ignored) make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' ln -s -f in_zarr4 h0001 make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' ln -s -f in_zarr4 h0002 make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' ln -s -f in_zarr4 h0003 make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' /usr/bin/ncgen -k netCDF-4 -o in_4.nc in.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' Making all in src Making all in nco make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_bnr.lo nco_bnr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_bnr.c -o nco_bnr.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o ncatted.o ncatted.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_aux.lo nco_aux.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_aux.c -fPIC -DPIC -o .libs/nco_aux.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_aux.c -o nco_aux.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_cnf_dmn.lo nco_cnf_dmn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cnf_dmn.c -fPIC -DPIC -o .libs/nco_cnf_dmn.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cnf_dmn.c -o nco_cnf_dmn.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_cln_utl.lo nco_cln_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cln_utl.c -fPIC -DPIC -o .libs/nco_cln_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cln_utl.c -o nco_cln_utl.o >/dev/null 2>&1 nco_cln_utl.c: In function 'nco_cln_var_prs': nco_cln_utl.c:1339:27: warning: 'mss_val_flt' may be used uninitialized [-Wmaybe-uninitialized] 1339 | if(var->has_mss_val && var->val.fp[idx] == mss_val_flt){ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_cln_utl.c:1335:11: note: 'mss_val_flt' was declared here 1335 | float mss_val_flt; | ^~~~~~~~~~~ nco_cln_utl.c:1320:27: warning: 'mss_val_dbl' may be used uninitialized [-Wmaybe-uninitialized] 1320 | if(var->has_mss_val && var->val.dp[idx] == mss_val_dbl){ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_cln_utl.c:1316:12: note: 'mss_val_dbl' was declared here 1316 | double mss_val_dbl; | ^~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_cnv_arm.lo nco_cnv_arm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cnv_arm.c -o nco_cnv_arm.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_att_utl.lo nco_att_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_att_utl.c -fPIC -DPIC -o .libs/nco_att_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_att_utl.c -o nco_att_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_cnv_csm.lo nco_cnv_csm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cnv_csm.c -fPIC -DPIC -o .libs/nco_cnv_csm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cnv_csm.c -o nco_cnv_csm.o >/dev/null 2>&1 In file included from /usr/include/stdio.h:906, from nco_cnv_csm.h:17, from nco_cnv_csm.c:10: In function 'fprintf', inlined from 'nco_cnv_cf_cll_mth_add' at nco_cnv_csm.c:511:48: /usr/include/bits/stdio2.h:79:10: warning: 'cll_mth_clm' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_cnv_csm.c: In function 'nco_cnv_cf_cll_mth_add': nco_cnv_csm.c:443:9: note: 'cll_mth_clm' was declared here 443 | char *cll_mth_clm; /* [sng] Cell methods for climatology */ | ^~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_cnf_typ.lo nco_cnf_typ.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cnf_typ.c -fPIC -DPIC -o .libs/nco_cnf_typ.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cnf_typ.c -o nco_cnf_typ.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_dbg.lo nco_dbg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_dbg.c -fPIC -DPIC -o .libs/nco_dbg.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_dbg.c -o nco_dbg.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_cnk.lo nco_cnk.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_cnk.c -o nco_cnk.o >/dev/null 2>&1 In file included from /usr/include/stdio.h:906, from nco_cnk.h:18, from nco_cnk.c:45: In function 'fprintf', inlined from 'nco_cnk_sz_set_trv' at nco_cnk.c:1330:8: /usr/include/bits/stdio2.h:79:10: warning: 'prt_sum' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_cnk.c: In function 'nco_cnk_sz_set_trv': nco_cnk.c:1305:12: note: 'prt_sum' was declared here 1305 | size_t prt_sum; /* [nbr] Partial sum (sum of coefficients times powers of two for higher powers */ | ^~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_crt.lo nco_crt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_crt.c -fPIC -DPIC -o .libs/nco_crt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_crt.c -o nco_crt.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_dmn_utl.lo nco_dmn_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_dmn_utl.c -fPIC -DPIC -o .libs/nco_dmn_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_dmn_utl.c -o nco_dmn_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_ctl.lo nco_ctl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_ctl.c -o nco_ctl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_flt.lo nco_flt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_flt.c -fPIC -DPIC -o .libs/nco_flt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_flt.c -o nco_flt.o >/dev/null 2>&1 nco_flt.c: In function 'nco_flt_hdf5_prs': nco_flt.c:395:28: warning: array subscript 'unsigned int[0]' is partly outside array bounds of 'short int[1]' [-Warray-bounds=] 395 | u32_lst[u32_nbr++]=*ui32p; | ^~~~~~ nco_flt.c:392:15: note: object 'sht_foo' of size 2 392 | short sht_foo=(short)strtol(prm_lst[prm_idx],&sng_cnv_rcd,NCO_SNG_CNV_BASE10); | ^~~~~~~ nco_flt.c:389:28: warning: array subscript 'unsigned int[0]' is partly outside array bounds of 'short unsigned int[1]' [-Warray-bounds=] 389 | u32_lst[u32_nbr++]=*ui32p; | ^~~~~~ nco_flt.c:386:24: note: object 'usht_foo' of size 2 386 | unsigned short usht_foo=(unsigned short)strtoul(prm_lst[prm_idx],&sng_cnv_rcd,NCO_SNG_CNV_BASE10); | ^~~~~~~~ nco_flt.c:330:37: warning: '%s' directive argument is null [-Wformat-overflow=] 330 | (void)fprintf(stderr,"%s: ERROR %s reports supplied filter string is empty\n",nco_prg_nm_get(),flt_sng); | ^~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_fl_utl.lo nco_fl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_fl_utl.c -fPIC -DPIC -o .libs/nco_fl_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_fl_utl.c -o nco_fl_utl.o >/dev/null 2>&1 nco_fl_utl.c: In function 'nco_fl_nm_prs': nco_fl_utl.c:1671:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 1671 | (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); | ^~ nco_fl_utl.c:1671:41: note: directive argument in the range [-2147483648, 2147483645] 1671 | (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); | ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from nco_fl_utl.h:26, from nco_fl_utl.c:10: In function 'sprintf', inlined from 'nco_fl_nm_prs' at nco_fl_utl.c:1671:8: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 9 and 19 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:535, from nco_fl_utl.h:28: In function 'strncpy', inlined from 'nco_fl_mk_lcl' at nco_fl_utl.c:1350:13: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' destination unchanged after copying no bytes [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ nco_fl_utl.c: In function 'nco_fl_ncz2psx': nco_fl_utl.c:2502:29: warning: 'psx_fll_lcl' may be used uninitialized [-Wmaybe-uninitialized] 2502 | if(psx_fll) psx_fll_lcl=(char *)strdup(psx_fll_lcl); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_fl_utl.c:2425:11: note: 'psx_fll_lcl' was declared here 2425 | char *psx_fll_lcl; /* O [sng] Full POSIX path with filename, suitable for file stat() */ | ^~~~~~~~~~~ nco_fl_utl.c:2489:25: warning: 'psx_drc_lcl' may be used uninitialized [-Wmaybe-uninitialized] 2489 | psx_drc_lcl[1]='\0'; | ~~~~~~~~~~~~~~^~~~~ nco_fl_utl.c:2426:11: note: 'psx_drc_lcl' was declared here 2426 | char *psx_drc_lcl; /* O [sng] POSIX path only, no filename, suitable for directory stat() */ | ^~~~~~~~~~~ nco_fl_utl.c:2504:29: warning: 'psx_stb_lcl' may be used uninitialized [-Wmaybe-uninitialized] 2504 | if(psx_stb) psx_stb_lcl=(char *)strdup(psx_stb_lcl); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_fl_utl.c:2427:11: note: 'psx_stb_lcl' was declared here 2427 | char *psx_stb_lcl; /* O [sng] POSIX filename (stub) without path or suffix, suitable for netCDF dataset name */ | ^~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_grp_trv.lo nco_grp_trv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_grp_trv.c -fPIC -DPIC -o .libs/nco_grp_trv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_grp_trv.c -o nco_grp_trv.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_lst_utl.lo nco_lst_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_lst_utl.c -fPIC -DPIC -o .libs/nco_lst_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_lst_utl.c -o nco_lst_utl.o >/dev/null 2>&1 nco_lst_utl.c: In function 'nco_fmt_sng_printf_subst': nco_lst_utl.c:38:89: warning: unknown escape sequence: '\.' 38 | const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */ | ^ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_kd.lo nco_kd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_kd.c -fPIC -DPIC -o .libs/nco_kd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_kd.c -o nco_kd.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_md5.lo nco_md5.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_md5.c -o nco_md5.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_mmr.lo nco_mmr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_mmr.c -o nco_mmr.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_lmt.lo nco_lmt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_lmt.c -fPIC -DPIC -o .libs/nco_lmt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_lmt.c -o nco_lmt.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_mss_val.lo nco_mss_val.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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-fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_msa.lo nco_msa.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_msa.c -o nco_msa.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_mta.lo nco_mta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_mta.c -fPIC -DPIC -o .libs/nco_mta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_mta.c -o nco_mta.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_omp.lo nco_omp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_omp.c -o nco_omp.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_map.lo nco_map.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_map.c -fPIC -DPIC -o .libs/nco_map.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_map.c -o nco_map.o >/dev/null 2>&1 nco_map.c: In function 'nco_map_mk': nco_map.c:302:12: warning: variable 'flg_grd_out_rct' set but not used [-Wunused-but-set-variable] 302 | nco_bool flg_grd_out_rct=False; /* [flg] Rectangular coordinates */ | ^~~~~~~~~~~~~~~ nco_map.c:300:12: warning: variable 'flg_grd_in_rct' set but not used [-Wunused-but-set-variable] 300 | nco_bool flg_grd_in_rct=False; /* [flg] Rectangular coordinates */ | ^~~~~~~~~~~~~~ nco_map.c:231:7: warning: variable 'bnd_nbr_out' set but not used [-Wunused-but-set-variable] 231 | int bnd_nbr_out; /* [nbr] Number of vertices for destination grid coordinates */ | ^~~~~~~~~~~ nco_map.c:213:8: warning: variable 'col_nbr_in' set but not used [-Wunused-but-set-variable] 213 | long col_nbr_in; /* [idx] Number of columns in source grid */ | ^~~~~~~~~~ nco_map.c:212:7: warning: variable 'bnd_nbr_in' set but not used [-Wunused-but-set-variable] 212 | int bnd_nbr_in; /* [nbr] Number of vertices for source grid coordinates */ | ^~~~~~~~~~ nco_map.c:418:15: warning: 'lon_nbr_out' may be used uninitialized [-Wmaybe-uninitialized] 418 | if(idx%lon_nbr_out == 0) idx_tst=idx; | ~~~^~~~~~~~~~~~ nco_map.c:233:8: note: 'lon_nbr_out' was declared here 233 | long lon_nbr_out; /* [nbr] Number of longitudes in destination grid */ | ^~~~~~~~~~~ nco_map.c:402:15: warning: 'lon_nbr_in' may be used uninitialized [-Wmaybe-uninitialized] 402 | if(idx%lon_nbr_in == 0) idx_tst=idx; | ~~~^~~~~~~~~~~ nco_map.c:214:8: note: 'lon_nbr_in' was declared here 214 | long lon_nbr_in; /* [idx] Number of longitudes in source grid */ | ^~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_pck.lo nco_pck.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_pck.c -o nco_pck.o >/dev/null 2>&1 nco_pck.c: In function 'nco_pck_map_get': nco_pck.c:160:88: warning: '%s' directive argument is null [-Wformat-overflow=] 160 | (void)fprintf(stderr,"%s: ERROR %s reports empty user-specified packing map string %s\n",nco_prg_nm,fnc_nm,nco_pck_map_sng); | ^~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_ply.lo nco_ply.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_ply.c -fPIC -DPIC -o .libs/nco_ply.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_ply.c -o nco_ply.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_netcdf.lo nco_netcdf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_netcdf.c -o nco_netcdf.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_ply_lst.lo nco_ply_lst.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_ply_lst.c -fPIC -DPIC -o .libs/nco_ply_lst.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_ply_lst.c -o nco_ply_lst.o >/dev/null 2>&1 nco_ply_lst.c: In function 'nco_poly_lst_mk_vrl_crt': nco_ply_lst.c:608:10: warning: variable 'size' set but not used [-Wunused-but-set-variable] 608 | kd_box size; | ^~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_ppc.lo nco_ppc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_ppc.c -o nco_ppc.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' nco_ppc.c: In function 'nco_ppc_bitmask': nco_ppc.c:1192:53: warning: 'mss_val_cmp_dbl' may be used uninitialized [-Wmaybe-uninitialized] 1192 | if(op1.dp[idx] != 0.0 && op1.dp[idx] != 1.0 && op1.dp[idx] != mss_val_cmp_dbl){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_ppc.c:660:10: note: 'mss_val_cmp_dbl' was declared here 660 | double mss_val_cmp_dbl; /* Missing value for comparison to double precision values */ | ^~~~~~~~~~~~~~~ nco_ppc.c:1021:55: warning: 'mss_val_cmp_flt' may be used uninitialized [-Wmaybe-uninitialized] 1021 | if(op1.fp[idx] != 0.0f && op1.fp[idx] != 1.0f && op1.fp[idx] != mss_val_cmp_flt){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_ppc.c:662:9: note: 'mss_val_cmp_flt' was declared here 662 | float mss_val_cmp_flt; /* Missing value for comparison to single precision values */ | ^~~~~~~~~~~~~~~ nco_ppc.c:674:17: warning: 'u32_ptr' may be used uninitialized [-Wmaybe-uninitialized] 674 | unsigned int *u32_ptr; | ^~~~~~~ nco_ppc.c:678:27: warning: 'u64_ptr' may be used uninitialized [-Wmaybe-uninitialized] 678 | unsigned long long int *u64_ptr; | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_rec_var.lo nco_rec_var.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_rec_var.c -o nco_rec_var.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_rth_flt.lo nco_rth_flt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_rth_flt.c -fPIC -DPIC -o .libs/nco_rth_flt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_rth_flt.c -o nco_rth_flt.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_rth_utl.lo nco_rth_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_rth_utl.c -fPIC -DPIC -o .libs/nco_rth_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_rth_utl.c -o nco_rth_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_scl_utl.lo nco_scl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_scl_utl.c -fPIC -DPIC -o .libs/nco_scl_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_scl_utl.c -o nco_scl_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_grp_utl.lo nco_grp_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_grp_utl.c -fPIC -DPIC -o .libs/nco_grp_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_grp_utl.c -o nco_grp_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_scm.lo nco_scm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_scm.c -fPIC -DPIC -o .libs/nco_scm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_scm.c -o nco_scm.o >/dev/null 2>&1 In file included from /usr/include/string.h:535, from nco_scm.h:22, from nco_scm.c:10: In function 'strncpy', inlined from 'cvs_vrs_prs' at nco_scm.c:83:14: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' offset 7 is out of the bounds [0, 7] of object 'cvs_Name' with type 'char[7]' [-Warray-bounds=] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ nco_scm.c: In function 'cvs_vrs_prs': nco_scm.c:34:8: note: 'cvs_Name' declared here 34 | char cvs_Name[]="$Name$"; | ^~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_sld.lo nco_sld.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_sld.c -fPIC -DPIC -o .libs/nco_sld.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_sld.c -o nco_sld.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_sng_utl.lo nco_sng_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_sng_utl.c -o nco_sng_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' nco_sng_utl.c: In function 'nm2sng_cdl': nco_sng_utl.c:270:41: warning: '__snprintf_chk' output truncated before the last format character [-Wformat-truncation=] 270 | snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); | ^ In file included from /usr/include/stdio.h:906, from nco_sng_utl.h:21, from nco_sng_utl.c:10: In function 'snprintf', inlined from 'nm2sng_cdl' at nco_sng_utl.c:270:2: /usr/include/bits/stdio2.h:54:10: note: '__snprintf_chk' output 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_sng_utl.c: In function 'nm2sng_fl': nco_sng_utl.c:425:41: warning: '__snprintf_chk' output truncated before the last format character [-Wformat-truncation=] 425 | snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); | ^ In function 'snprintf', inlined from 'nm2sng_fl' at nco_sng_utl.c:425:2: /usr/include/bits/stdio2.h:54:10: note: '__snprintf_chk' output 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_s1d.lo nco_s1d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_s1d.c -fPIC -DPIC -o .libs/nco_s1d.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_s1d.c -o nco_s1d.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' nco_s1d.c: In function 'nco_s1d_unpack': nco_s1d.c:383:9: warning: variable 'lon_dmn_nm_out' set but not used [-Wunused-but-set-variable] 383 | char *lon_dmn_nm_out; | ^~~~~~~~~~~~~~ nco_s1d.c:382:9: warning: variable 'lat_dmn_nm_out' set but not used [-Wunused-but-set-variable] 382 | char *lat_dmn_nm_out; | ^~~~~~~~~~~~~~ nco_s1d.c:353:10: warning: variable 'grd_sz_in' set but not used [-Wunused-but-set-variable] 353 | size_t grd_sz_in; /* [nbr] Number of elements in single layer of input grid */ | ^~~~~~~~~ nco_s1d.c:45:9: warning: variable 'fl_out' set but not used [-Wunused-but-set-variable] 45 | char *fl_out; | ^~~~~~ nco_s1d.c:857:45: warning: 'fl_tpl' may be used uninitialized [-Wmaybe-uninitialized] 857 | if(FL_RTR_RMT_LCN && RM_RMT_FL_PST_PRC) (void)nco_fl_rm(fl_tpl); | ^~~~~~~~~~~~~~~~~~~~~~~ nco_s1d.c:46:9: note: 'fl_tpl' was declared here 46 | char *fl_tpl; /* [sng] Template file (contains horizontal grid) */ | ^~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_srm.lo nco_srm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_srm.c -o nco_srm.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_var_avg.lo nco_var_avg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_var_avg.c -o nco_var_avg.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_sph.lo nco_sph.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_sph.c -fPIC -DPIC -o .libs/nco_sph.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_sph.c -o nco_sph.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' nco_sph.c: In function 'nco_sph_seg_int_old': nco_sph.c:508:10: warning: variable 'nx_ci' set but not used [-Wunused-but-set-variable] 508 | double nx_ci; | ^~~~~ nco_sph.c:506:10: warning: variable 'nx3' set but not used [-Wunused-but-set-variable] 506 | double nx3; | ^~~ nco_sph.c:505:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable] 505 | double nx2; | ^~~ nco_sph.c: In function 'nco_sph_seg_parallel': nco_sph.c:1426:10: warning: variable 'nx3' set but not used [-Wunused-but-set-variable] 1426 | double nx3; | ^~~ nco_sph.c:1425:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable] 1425 | double nx2; | ^~~ nco_sph.c:1424:10: warning: variable 'nx1' set but not used [-Wunused-but-set-variable] 1424 | double nx1; | ^~~ nco_sph.c: In function 'nco_sph_seg_vrt_int': nco_sph.c:1836:10: warning: variable 'nx_av' set but not used [-Wunused-but-set-variable] 1836 | double nx_av; | ^~~~~ nco_sph.c:1835:10: warning: variable 'nx_ab' set but not used [-Wunused-but-set-variable] 1835 | double nx_ab; | ^~~~~ nco_sph.c: In function 'nco_sph_is_convex': nco_sph.c:2469:8: warning: variable 'n1' set but not used [-Wunused-but-set-variable] 2469 | double n1; | ^~ nco_sph.c: In function 'nco_rll_intersect': nco_sph.c:3302:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable] 3302 | double nx2; | ^~~ nco_sph.c:3301:10: warning: variable 'nx1' set but not used [-Wunused-but-set-variable] 3301 | double nx1; | ^~~ In file included from /usr/include/stdio.h:906, from nco_sph.h:61, from nco_sph.c:49: In function 'fprintf', inlined from 'nco_sph_seg_int_old' at nco_sph.c:584:5: /usr/include/bits/stdio2.h:79:10: warning: 'nx_ai' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_sph.c: In function 'nco_sph_seg_int_old': nco_sph.c:507:10: note: 'nx_ai' was declared here 507 | double nx_ai; | ^~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_var_lst.lo nco_var_lst.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_var_lst.c -o nco_var_lst.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_prn.lo nco_prn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_prn.c -o nco_prn.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' nco_prn.c: In function 'nco_prn_var_val_lmt': nco_prn.c:1644:53: warning: '%s' directive writing up to 99 bytes into a region of size 86 [-Wformat-overflow=] 1644 | (void)sprintf(var_sng,"%%s%c%%ld--%%ld%c='%s' %%s",arr_lft_dlm,arr_rgt_dlm,dmn_sng); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:906, from nco_prn.h:22, from nco_prn.c:10: In function 'sprintf', inlined from 'nco_prn_var_val_lmt' at nco_prn.c:1644:10: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 19 and 118 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_prn.c: In function 'nco_prn_var_dfn': nco_prn.c:1879:36: warning: 'vln_lng_avg' may be used uninitialized [-Wmaybe-uninitialized] 1879 | if(cls_typ == NC_VLEN) (void)fprintf(fp_out,"%*s%s size (RAM) = %ld*mean_length(NC_VLEN)*sizeof(%s) = %ld*%g*%lu = %lu bytes\n",prn_ndn,spc_sng,var_trv->nm,var_sz,nco_typ_sng(bs_typ),var_sz,vln_lng_avg,(unsigned long)nco_typ_lng_udt(nc_id,bs_typ),(unsigned long)ram_sz_crr); else (void)fprintf(fp_out,"%*s%s size (RAM) = %ld*sizeof(%s) = %ld*%lu = %lu bytes\n",prn_ndn,spc_sng,var_trv->nm,var_sz,nco_typ_sng(cls_typ),var_sz,(unsigned long)nco_typ_lng_udt(nc_id,bs_typ),(unsigned long)ram_sz_crr); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_prn.c:1721:9: note: 'vln_lng_avg' was declared here 1721 | float vln_lng_avg; /* [nbr] Mean vlen length */ | ^~~~~~~~~~~ nco_prn.c: In function 'nco_prn_att': nco_prn.c:807:15: warning: 'mbr_val' may be used uninitialized [-Wmaybe-uninitialized] 807 | rcd=nco_inq_enum_ident(grp_id,att[idx].type,mbr_val,mbr_nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_prn.c:478:15: note: 'mbr_val' was declared here 478 | long long mbr_val; | ^~~~~~~ nco_prn.c: In function 'nco_prn_var_val_trv': nco_prn.c:2386:13: warning: 'vln_val_dp' may be used uninitialized [-Wmaybe-uninitialized] 2386 | double *vln_val_dp; | ^~~~~~~~~~ nco_prn.c:2526:29: warning: 'vln_val_fp' may be used uninitialized [-Wmaybe-uninitialized] 2526 | is_mss_val=!memcmp((char *)vln_val_fp+vln_idx*val_sz_byt,var->mss_val.vp,(size_t)val_sz_byt); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_prn.c:2387:12: note: 'vln_val_fp' was declared here 2387 | float *vln_val_fp; | ^~~~~~~~~~ nco_prn.c:2559:78: warning: 'vln_val_ip' may be used uninitialized [-Wmaybe-uninitialized] 2559 | if(prn_flg->PRN_MSS_VAL_BLANK && var->has_mss_val) is_mss_val=!memcmp((char *)vln_val_ip+vln_idx*val_sz_byt,var->mss_val.vp,(size_t)val_sz_byt); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_prn.c:2388:14: note: 'vln_val_ip' was declared here 2388 | nco_int *vln_val_ip; | ^~~~~~~~~~ nco_prn.c:2389:16: warning: 'vln_val_sp' may be used uninitialized [-Wmaybe-uninitialized] 2389 | nco_short *vln_val_sp; | ^~~~~~~~~~ nco_prn.c:2390:15: warning: 'vln_val_bp' may be used uninitialized [-Wmaybe-uninitialized] 2390 | nco_byte *vln_val_bp; | ^~~~~~~~~~ nco_prn.c:2391:16: warning: 'vln_val_ubp' may be used uninitialized [-Wmaybe-uninitialized] 2391 | nco_ubyte *vln_val_ubp; | ^~~~~~~~~~~ nco_prn.c:2392:17: warning: 'vln_val_usp' may be used uninitialized [-Wmaybe-uninitialized] 2392 | nco_ushort *vln_val_usp; | ^~~~~~~~~~~ nco_prn.c:2393:15: warning: 'vln_val_uip' may be used uninitialized [-Wmaybe-uninitialized] 2393 | nco_uint *vln_val_uip; | ^~~~~~~~~~~ nco_prn.c:2394:16: warning: 'vln_val_i64p' may be used uninitialized [-Wmaybe-uninitialized] 2394 | nco_int64 *vln_val_i64p; | ^~~~~~~~~~~~ nco_prn.c:2395:17: warning: 'vln_val_ui64p' may be used uninitialized [-Wmaybe-uninitialized] 2395 | nco_uint64 *vln_val_ui64p; | ^~~~~~~~~~~~~ nco_prn.c:2572:48: warning: 'vln_lng' may be used uninitialized [-Wmaybe-uninitialized] 2572 | case NC_UINT64: for(vln_idx=0;vln_idxtype,mbr_val,mbr_nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_prn.c:2384:15: note: 'mbr_val' was declared here 2384 | long long mbr_val; | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_var_scv.lo nco_var_scv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_var_scv.c -o nco_var_scv.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_var_utl.lo nco_var_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_var_utl.c -o nco_var_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o ncbo.o ncbo.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_var_rth.lo nco_var_rth.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_var_rth.c -o nco_var_rth.o >/dev/null 2>&1 nco_var_rth.c: In function 'nco_var_sbt': nco_var_rth.c:3726:25: warning: 'tm_srt' may be used uninitialized [-Wmaybe-uninitialized] 3726 | tm_drn=1.0e6*(tm_end-tm_srt)/CLOCKS_PER_SEC; | ~~~~~~~^~~~~~~~ nco_var_rth.c:3539:11: note: 'tm_srt' was declared here 3539 | clock_t tm_srt; | ^~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o ncecat.o ncecat.c ncecat.c: In function 'main': ncecat.c:842:17: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 842 | gpe_arg=strncpy(gpe_arg,stb_srt_psn,strlen(stb_srt_psn)-sfx_lng); | ^ ncecat.c:842:45: note: length computed here 842 | gpe_arg=strncpy(gpe_arg,stb_srt_psn,strlen(stb_srt_psn)-sfx_lng); | ^~~~~~~~~~~~~~~~~~~ ncecat.c:800:30: warning: '%02d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=] 800 | sprintf(grp_out_sfx,"%02d",fl_idx); | ^~~~ ncecat.c:800:29: note: directive argument in the range [0, 2147483646] 800 | sprintf(grp_out_sfx,"%02d",fl_idx); | ^~~~~~ In file included from /usr/include/stdio.h:906, from ncecat.c:46: In function 'sprintf', inlined from 'main' at ncecat.c:800:9: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 3 and 11 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o ncflint.o ncflint.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o ncpdq.o ncpdq.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o ncks.o ncks.c ncks.c: In function 'main': ncks.c:1571:7: warning: 'fl_lst_in' may be used uninitialized [-Wmaybe-uninitialized] 1571 | if(fl_lst_in && fl_lst_abb == NULL) fl_lst_in=nco_sng_lst_free(fl_lst_in,fl_nbr); | ^ ncks.c:124:10: note: 'fl_lst_in' was declared here 124 | char **fl_lst_in; | ^~~~~~~~~ ncks.c:199:8: warning: 'in_id_arr' may be used uninitialized [-Wmaybe-uninitialized] 199 | int *in_id_arr; /* [id] netCDF file IDs used by OpenMP code */ | ^~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o ncrename.o ncrename.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o ncap_utl.o ncap_utl.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' test -f ncap_lex.c || /bin/sh ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o ncwa.o ncwa.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o ncap_lex.o ncap_lex.c ncap_lex.c:2978:16: warning: 'input' defined but not used [-Wunused-function] 2978 | #else | ^ ncap_lex.l: In function 'nco_yylex': ncap_lex.l:611:34: warning: '%s' directive writing up to 255 bytes into a region of size 147 [-Wformat-overflow=] 611 | (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:906, from ncap_lex.c:277: In function 'sprintf', inlined from 'nco_yylex' at ncap_lex.l:611:13: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output 98 or more bytes (assuming 353) into a destination of size 200 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ncap_lex.l: In function 'nco_yylex': ncap_lex.l:587:36: warning: '%s' directive writing up to 255 bytes into a region of size 147 [-Wformat-overflow=] 587 | (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In function 'sprintf', inlined from 'nco_yylex' at ncap_lex.l:587:8: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output 98 or more bytes (assuming 353) into a destination of size 200 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ncap_lex.l: In function 'nco_yylex': ncap_lex.l:634:34: warning: '%s' directive writing up to 255 bytes into a region of size 164 [-Wformat-overflow=] 634 | (void)sprintf(ncap_err_sng,"#Warning: unable to locate variable %s. So cannot create attribute %s",var_nm,yytext); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In function 'sprintf', inlined from 'nco_yylex' at ncap_lex.l:634:13: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output 66 or more bytes (assuming 321) into a destination of size 200 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o ncra.o ncra.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c -o nco_rgr.lo nco_rgr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_rgr.c -fPIC -DPIC -o .libs/nco_rgr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -fopenmp -std=gnu11 -c nco_rgr.c -o nco_rgr.o >/dev/null 2>&1 nco_rgr.c: In function 'nco_ntp_vrt._omp_fn.0': nco_rgr.c:3275:19: warning: 'crd_out_mnt' may be used uninitialized [-Wmaybe-uninitialized] 3275 | double *crd_out_mnt; /* Output vertical coordinate reversed if necessary to be monotonically increasing */ | ^~~~~~~~~~~ nco_rgr.c:3274:19: warning: 'crd_in_mnt' may be used uninitialized [-Wmaybe-uninitialized] 3274 | double *crd_in_mnt; /* Input vertical coordinate reversed if necessary to be monotonically increasing */ | ^~~~~~~~~~ nco_rgr.c:3276:19: warning: 'dat_in_mnt' may be used uninitialized [-Wmaybe-uninitialized] 3276 | double *dat_in_mnt; /* Input data (to be interpolated) reversed if necessary along with input grid */ | ^~~~~~~~~~ nco_rgr.c:3277:19: warning: 'dat_out_mnt' may be used uninitialized [-Wmaybe-uninitialized] 3277 | double *dat_out_mnt; /* Output data (interpolated) reversed if necessary along with output grid */ | ^~~~~~~~~~~ nco_rgr.c:3520:21: warning: 'FIRST_WARNING_RHS' may be used uninitialized [-Wmaybe-uninitialized] 3520 | if(FIRST_WARNING_RHS) (void)fprintf(fp_stdout,"%s: INFO %s geopotential height extrapolated toward/into surface using hypsometric equation with constant global mean virtual temperature = %g for variable %s\n",nco_prg_nm_get(),fnc_nm,tpt_vrt_avg,var_nm); | ^ nco_rgr.c:3344:20: note: 'FIRST_WARNING_RHS' was declared here 3344 | nco_bool FIRST_WARNING_RHS; /* [flg] First warning for RHS extrapolation */ | ^~~~~~~~~~~~~~~~~ nco_rgr.c:3454:21: warning: 'FIRST_WARNING_LHS' may be used uninitialized [-Wmaybe-uninitialized] 3454 | if(FIRST_WARNING_LHS) (void)fprintf(fp_stdout,"%s: INFO %s geopotential height extrapolated upward towards space using hypsometric equation with constant global mean virtual temperature = %g for variable %s\n",nco_prg_nm_get(),fnc_nm,tpt_vrt_avg,var_nm); | ^ nco_rgr.c:3343:20: note: 'FIRST_WARNING_LHS' was declared here 3343 | nco_bool FIRST_WARNING_LHS; /* [flg] First warning for LHS extrapolation */ | ^~~~~~~~~~~~~~~~~ nco_rgr.c: In function 'nco_rgr_ini': nco_rgr.c:545:9: warning: 'cnv_nbr' may be used uninitialized [-Wmaybe-uninitialized] 545 | if(cnv_nbr != 4) cnv_nbr=sscanf(rgr_lst[rgr_var_idx].val,"%lf,%lf,%lf,%lf",&rgr->lon_wst,&rgr->lon_est,&rgr->lat_sth,&rgr->lat_nrt); | ^ nco_rgr.c:263:7: note: 'cnv_nbr' was declared here 263 | int cnv_nbr; /* [nbr] Number of elements converted by sscanf() */ | ^~~~~~~ nco_rgr.c: In function 'nco_lat_wgt_gss': nco_rgr.c:6896:13: warning: 'sp' may be used uninitialized [-Wmaybe-uninitialized] 6896 | (void)fprintf(stdout,"%s: ERROR %s reports convergence only %g after %d iterations for lat_idx = %d\n",nco_prg_nm_get(),fnc_nm,fabs(sp),itr_nbr_max,lat_idx); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_rgr.c:6861:10: note: 'sp' was declared here 6861 | double sp; // Current iteration latitude increment | ^~ nco_rgr.c: In function 'nco_sph_plg_area': nco_rgr.c:7643:5: warning: 'a_idx' may be used uninitialized [-Wmaybe-uninitialized] 7643 | if(a_idx) a_idx=(long *)nco_free(a_idx); | ^ nco_rgr.c:7103:9: note: 'a_idx' was declared here 7103 | long *a_idx; /* [idx] Point A 1-D indices for each triangle in polygon */ | ^~~~~ nco_rgr.c:7644:5: warning: 'b_idx' may be used uninitialized [-Wmaybe-uninitialized] 7644 | if(b_idx) b_idx=(long *)nco_free(b_idx); | ^ nco_rgr.c:7104:9: note: 'b_idx' was declared here 7104 | long *b_idx; /* [idx] Point B 1-D indices for each triangle in polygon */ | ^~~~~ nco_rgr.c:7645:5: warning: 'c_idx' may be used uninitialized [-Wmaybe-uninitialized] 7645 | if(c_idx) c_idx=(long *)nco_free(c_idx); | ^ nco_rgr.c:7105:9: note: 'c_idx' was declared here 7105 | long *c_idx; /* [idx] Point C 1-D indices for each triangle in polygon */ | ^~~~~ nco_rgr.c: In function 'nco_rgr_wgt': nco_rgr.c:3947:113: warning: '%s' directive argument is null [-Wformat-overflow=] 3947 | if(nco_rgr_mth_typ == nco_rgr_mth_nil) (void)fprintf(stdout,"%s: WARNING %s reports map global attribute %s = %s does not match SCRIP/ESMF conventions that support only values of \"Conservative\" and \"Bilinear\" for this attribute. Proceeding anyway...\n",nco_prg_nm_get(),fnc_nm,cnv_sng,att_val); | ^~ nco_rgr.c:4178:29: warning: 'lon_psn_src' may be used uninitialized [-Wmaybe-uninitialized] 4178 | lon_nbr_in=dmn_sz_in_int[lon_psn_src]; | ^ nco_rgr.c:4075:7: note: 'lon_psn_src' was declared here 4075 | int lon_psn_src; /* [idx] Ordinal position of longitude in rectangular source grid dimension-size array */ | ^~~~~~~~~~~ nco_rgr.c:4179:29: warning: 'lat_psn_src' may be used uninitialized [-Wmaybe-uninitialized] 4179 | lat_nbr_in=dmn_sz_in_int[lat_psn_src]; | ^ nco_rgr.c:4076:7: note: 'lat_psn_src' was declared here 4076 | int lat_psn_src; /* [idx] Ordinal position of latitude in rectangular source grid dimension-size array */ | ^~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from nco_rgr.h:19, from nco_rgr.c:10: In function 'fprintf', inlined from 'nco_rgr_wgt' at nco_rgr.c:4260:11: /usr/include/bits/stdio2.h:79:10: warning: 'lon_nbr_in' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_rgr.c: In function 'nco_rgr_wgt': nco_rgr.c:4168:8: note: 'lon_nbr_in' was declared here 4168 | long lon_nbr_in; /* [idx] Number of longitudes in rectangular source grid */ | ^~~~~~~~~~ In function 'fprintf', inlined from 'nco_rgr_wgt' at nco_rgr.c:4260:11: /usr/include/bits/stdio2.h:79:10: warning: 'lat_nbr_in' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_rgr.c: In function 'nco_rgr_wgt': nco_rgr.c:4169:8: note: 'lat_nbr_in' was declared here 4169 | long lat_nbr_in; /* [idx] Number of latitudes in rectangular source grid */ | ^~~~~~~~~~ In function 'fprintf', inlined from 'nco_rgr_wgt' at nco_rgr.c:4671:47: /usr/include/bits/stdio2.h:79:10: warning: 'idx_max_dvn' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_rgr.c: In function 'nco_rgr_wgt': nco_rgr.c:4651:8: note: 'idx_max_dvn' was declared here 4651 | long idx_max_dvn; /* [idx] Index of maximum deviation from 1.0 */ | ^~~~~~~~~~~ nco_rgr.c:5346:9: warning: 'bnd_nm_out' may be used uninitialized [-Wmaybe-uninitialized] 5346 | if(!strcmp(bnd_nm_out,bnd_tm_nm_out)){ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_rgr.c:5276:9: note: 'bnd_nm_out' was declared here 5276 | char *bnd_nm_out; | ^~~~~~~~~~ nco_rgr.c:6711:32: warning: 'tm_srt' may be used uninitialized [-Wmaybe-uninitialized] 6711 | tm_drn=(float)(tm_end-tm_srt)/CLOCKS_PER_SEC; | ~~~~~~~^~~~~~~~ nco_rgr.c:6334:17: note: 'tm_srt' was declared here 6334 | clock_t tm_srt; /* [us] make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' Microseconds at start */ | ^~~~~~ nco_rgr.c: In function 'nco_grd_nfr': nco_rgr.c:10487:7: warning: 'lat_typ' may be used uninitialized [-Wmaybe-uninitialized] 10487 | if(lat_typ == nco_grd_lat_nil){ | ^ nco_rgr.c:9102:23: note: 'lat_typ' was declared here 9102 | nco_grd_lat_typ_enm lat_typ; /* [enm] Latitude grid-type enum */ | ^~~~~~~ nco_rgr.c:9686:11: warning: 'msk_unn.vp' may be used uninitialized [-Wmaybe-uninitialized] 9686 | rcd=nco_get_vara(in_id,msk_id,dmn_srt,dmn_cnt,msk_unn.vp,msk_typ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_rgr.c:9108:11: note: 'msk_unn.vp' was declared here 9108 | ptr_unn msk_unn; | ^~~~~~~ nco_rgr.c:10474:51: warning: 'lat_spn' may be used uninitialized [-Wmaybe-uninitialized] 10474 | if(flg_s2n) lat_ctr_tst_fv=lat_ntf[0L]+lat_spn/(lat_nbr-1L); else lat_ctr_tst_fv=lat_ntf[0L]-lat_spn/(lat_nbr-1L); | ~~~~~~~^~~~~~~~~~~~~ nco_rgr.c:8999:10: note: 'lat_spn' was declared here 8999 | double lat_spn; /* [dgr] Latitude span */ | ^~~~~~~ nco_rgr.c: In function 'nco_ntp_vrt': nco_rgr.c:1115:9: warning: 'ps_nm_tpl' may be used uninitialized [-Wmaybe-uninitialized] 1115 | rcd=nco_inq_varid_flg(tpl_id,ps_nm_tpl,&ps_id); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_rgr.c:1082:9: note: 'ps_nm_tpl' was declared here 1082 | char *ps_nm_tpl; /* [sng] Surface pressure field name in template file */ | ^~~~~~~~~ nco_rgr.c:1405:15: warning: 'mss_val_cmp_dbl' may be used uninitialized [-Wmaybe-uninitialized] 1405 | if(lt_out[idx_ttl] != mss_val_cmp_dbl) lt_sum[idx_fst+grd_idx]+=lt_out[idx_ttl]; | ^ nco_rgr.c:1307:10: note: 'mss_val_cmp_dbl' was declared here 1307 | double mss_val_cmp_dbl; /* Missing value for comparison to double precision values */ | ^~~~~~~~~~~~~~~ nco_rgr.c:2441:26: warning: 'dmn_nbr_out' may be used uninitialized [-Wmaybe-uninitialized] 2441 | for(dmn_idx=0;dmn_idx struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from ncap2_att.hh:9: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o sdo_utl.o sdo_utl.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o Invoke.o Invoke.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' In file included from libnco++.hh:26, from Invoke.cc:13: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from fmc_gsl_cls.hh:12: ../../config.h:443: note: this is the location of the previous definition 443 | #define NCO_GSL_VERSION 206 | In file included from ncap2_utl.hh:54, from vtl_cls.hh:11, from fmc_cls.hh:13, from libnco++.hh:22: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from Invoke.cc:9: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o sym_cls.o sym_cls.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o ncap2.o ncap2.cc In file included from libnco++.hh:26, from ncap2.cc:80: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from fmc_gsl_cls.hh:12: ../../config.h:443: note: this is the location of the previous definition 443 | #define NCO_GSL_VERSION 206 | In file included from ncap2_utl.hh:54, from vtl_cls.hh:11, from fmc_cls.hh:13, from libnco++.hh:22: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from ncap2.cc:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o fmc_cls.o fmc_cls.cc In file included from ncap2_utl.hh:54, from vtl_cls.hh:11, from fmc_cls.hh:13, from fmc_cls.cc:3: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from fmc_cls.hh:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o prs_cls.o prs_cls.cc In file included from ncap2_utl.hh:54, from prs_cls.cc:23: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from prs_cls.cc:13: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o NcapVar.o NcapVar.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o NcapVarVector.o NcapVarVector.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o ncoLexer.o ncoLexer.cpp In file included from prs_cls.hh:16, from ncoGrammar.g:30, from ncoLexer.cpp:2: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/antlr/Token.hpp:13, from /usr/include/antlr/CommonToken.hpp:12, from ncoLexer.hpp:6: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mASSIGN(bool)': ncoLexer.cpp:416:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 416 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mPLUS_ASSIGN(bool)': ncoLexer.cpp:430:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 430 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mMINUS_ASSIGN(bool)': ncoLexer.cpp:444:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 444 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mTIMES_ASSIGN(bool)': ncoLexer.cpp:458:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 458 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDIVIDE_ASSIGN(bool)': ncoLexer.cpp:472:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 472 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mINC(bool)': ncoLexer.cpp:486:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 486 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDEC(bool)': ncoLexer.cpp:500:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 500 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mQUESTION(bool)': ncoLexer.cpp:514:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 514 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLPAREN(bool)': ncoLexer.cpp:528:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 528 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mRPAREN(bool)': ncoLexer.cpp:542:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 542 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLCURL(bool)': ncoLexer.cpp:556:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 556 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mRCURL(bool)': ncoLexer.cpp:570:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 570 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLSQUARE(bool)': ncoLexer.cpp:584:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 584 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mRSQUARE(bool)': ncoLexer.cpp:598:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 598 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCOMMA(bool)': ncoLexer.cpp:612:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 612 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mQUOTE(bool)': ncoLexer.cpp:626:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 626 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mSEMI(bool)': ncoLexer.cpp:640:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 640 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCOLON(bool)': ncoLexer.cpp:654:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 654 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCARET(bool)': ncoLexer.cpp:668:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 668 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mTIMES(bool)': ncoLexer.cpp:682:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 682 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDIVIDE(bool)': ncoLexer.cpp:696:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 696 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mMOD(bool)': ncoLexer.cpp:710:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 710 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mPLUS(bool)': ncoLexer.cpp:724:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 724 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mMINUS(bool)': ncoLexer.cpp:738:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 738 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mEQ(bool)': ncoLexer.cpp:752:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 752 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndemake[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' x; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mNEQ(bool)': ncoLexer.cpp:766:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 766 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLTHAN(bool)': ncoLexer.cpp:780:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 780 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mGTHAN(bool)': ncoLexer.cpp:794:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 794 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLEQ(bool)': ncoLexer.cpp:808:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 808 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mGEQ(bool)': ncoLexer.cpp:822:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 822 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mFLTHAN(bool)': ncoLexer.cpp:836:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 836 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mFGTHAN(bool)': ncoLexer.cpp:850:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 850 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLAND(bool)': ncoLexer.cpp:864:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 864 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLNOT(bool)': ncoLexer.cpp:878:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 878 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLOR(bool)': ncoLexer.cpp:892:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 892 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDOT(bool)': ncoLexer.cpp:906:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 906 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCALL_REF(bool)': ncoLexer.cpp:920:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 920 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDGT(bool)': ncoLexer.cpp:934:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 934 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLPH(bool)': ncoLexer.cpp:950:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 950 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLPHDGT(bool)': ncoLexer.cpp:1036:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1036 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mXPN(bool)': ncoLexer.cpp:1136:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1136 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mVAR_NM_QT(bool)': ncoLexer.cpp:1212:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1212 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mBLASTOUT(bool)': ncoLexer.cpp:1340:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1340 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mUNUSED_OPS(bool)': ncoLexer.cpp:1370:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1370 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mWS(bool)': ncoLexer.cpp:1422:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1422 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCXX_COMMENT(bool)': ncoLexer.cpp:1472:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1472 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mC_COMMENT(bool)': ncoLexer.cpp:1502:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1502 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mNUMBER_DOT(bool)': ncoLexer.cpp:1560:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1560 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mNUMBER(bool)': ncoLexer.cpp:1684:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1684 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mVAR_ATT(bool)': ncoLexer.cpp:2036:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 2036 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mATT_ID(bool)': ncoLexer.cpp:2317:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 2317 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mINCLUDE(bool)': ncoLexer.cpp:2688:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 2688 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o ncap2_utl.o ncap2_utl.cc In file included from ncap2_utl.hh:54, from ncap2_utl.cc:11: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from ncap2_utl.hh:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o fmc_gsl_cls.o fmc_gsl_cls.cc In file included from fmc_gsl_cls.cc:10: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from ncap2_att.hh:5, from ncap2_utl.hh:60, from ncoGrammar.g:31, from fmc_gsl_cls.hh:43: ../../config.h:443: note: this is the location of the previous definition 443 | #define NCO_GSL_VERSION 206 | In file included from nco_gsl.hh:31, from fmc_gsl_cls.cc:11: ../../config.h:443: warning: "NCO_GSL_VERSION" redefined 443 | #define NCO_GSL_VERSION 206 | fmc_gsl_cls.hh:49: note: this is the location of the previous definition 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from prs_cls.hh:16, from ncoGrammar.g:30: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from fmc_gsl_cls.hh:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ fmc_gsl_cls.cc: In member function 'gsl_mfit_cls::mfit_fnd(bool&, std::vector, std::allocator > >&, fmc_cls&, ncoTree&)': fmc_gsl_cls.cc:5202:46: warning: 'var_tmp' may be used uninitialized [-Wmaybe-uninitialized] 5202 | if(!prs_arg->ntl_scn && var_tmp->val.vp == NULL) | ~~~~~~~~~~~~~^~ fmc_gsl_cls.cc:5137:19: note: 'var_tmp' was declared here 5137 | var_sct *var_tmp; | ^~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o nco_gsl.o nco_gsl.cc nco_gsl.cc:14:1: warning: 'double compute_covariance(const double*, size_t, const double*, size_t, size_t, double, double, const double*)' defined but not used [-Wunused-function] 14 | compute_covariance | ^~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o fmc_all_cls.o fmc_all_cls.cc In file included from prs_cls.hh:16, from ncoGrammar.g:30, from fmc_all_cls.hh:19, from fmc_all_cls.cc:10: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from fmc_all_cls.hh:14: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ fmc_all_cls.cc: In member function 'print_cls::fnd(antlr::ASTRefCount, antlr::ASTRefCount, fmc_cls&, ncoTree&)': fmc_all_cls.cc:5679:15: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 5679 | strncpy(var->val.cp,cp,sz); | ^ fmc_all_cls.cc:5675:17: note: length computed here 5675 | sz=strlen(cp); | ~~~~~~^~~~ fmc_all_cls.cc: In member function 'bil_cls::fnd(antlr::ASTRefCount, antlr::ASTRefCount, fmc_cls&, ncoTree&)': fmc_all_cls.cc:3834:19: warning: 'var_arr' may be used uninitialized [-Wmaybe-uninitialized] 3834 | in_typ=var_arr[0]->type; | ~~~~~~~~~^ fmc_all_cls.cc:3780:12: note: 'var_arr' declared here 3780 | var_sct *var_arr[6]; | ^~~~~~~ fmc_all_cls.cc:3838:31: warning: 'var_arr' may be used uninitialized [-Wmaybe-uninitialized] 3838 | var_arr[1]=nco_var_cnf_typ(in_typ,var_arr[1]); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:3780:12: note: 'var_arr' declared here 3780 | var_sct *var_arr[6]; | ^~~~~~~ fmc_all_cls.cc:3855:19: warning: 'var_arr' may be used uninitialized [-Wmaybe-uninitialized] 3855 | if(var_arr[1]->nbr_dim < 2) | ~~~~~~~~~^ fmc_all_cls.cc:3780:12: note: 'var_arr' declared here 3780 | var_sct *var_arr[6]; | ^~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o ncoParser.o ncoParser.cpp In file included from prs_cls.hh:16, from ncoGrammar.g:30, from ncoParser.cpp:2: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/antlr/Token.hpp:13, from /usr/include/antlr/TokenStream.hpp:12, from ncoParser.hpp:6: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include/udunits2 -I/usr/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -c -o ncoTree.o ncoTree.cpp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' In file included from prs_cls.hh:16, from ncoGrammar.g:30, from ncoTree.cpp:2: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/antlr/Token.hpp:13, from /usr/include/antlr/AST.hpp:13, from /usr/include/antlr/TreeParser.hpp:12, from ncoTree.hpp:7: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=link g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ../nco/libnco.la -lantlr -lgsl -lgslcblas -lm -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o ../nco/.libs/libnco.so -L/usr/lib64 -lantlr -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Nothing to be done for 'all-am'. Making all in man make[2]: Nothing to be done for 'all'. Making all in doc make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/doc' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/sh '/builddir/build/BUILD/nco-5.1.4/autobld/missing' makeinfo --version) >/dev/null 2>&1; then \ for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/sh '/builddir/build/BUILD/nco-5.1.4/autobld/missing' makeinfo -I . \ -o nco.info nco.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./nco.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/doc' + make -C doc html pdf make: Entering directory '/builddir/build/BUILD/nco-5.1.4/doc' rm -rf nco.htp if /bin/sh '/builddir/build/BUILD/nco-5.1.4/autobld/missing' makeinfo --html --ifinfo --no-split -I . \ -o nco.htp nco.texi; \ then \ rm -rf nco.html && mv nco.htp nco.html; \ else \ rm -rf nco.htp; exit 1; \ fi TEXINPUTS="../autobld:$TEXINPUTS" \ MAKEINFO='/bin/sh '/builddir/build/BUILD/nco-5.1.4/autobld/missing' makeinfo -I .' \ texi2dvi --pdf --batch --build-dir=nco.t2p -o nco.pdf \ nco.texi This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-5.1.4/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) 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[7] [8] [9] [10] [11] [12] [13] Overfull \hbox (32.18782pt too wide) in paragraph at lines 1428--1428 []@texttt ncks fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)[] [14] [15] Chapter 2 [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 3 [27] [28] [29] [30] [31] [32] Overfull \hbox (55.18257pt too wide) in paragraph at lines 3119--3119 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3147--3147 [][] [33] [34] [35] [36] [37] [38] [39] [40] Overfull \hbox (233.39189pt too wide) in paragraph at lines 3898--3898 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface/pres.sfc.1969.nc ~/foo.nc[] [41] Overfull \hbox (382.85777pt too wide) in paragraph at lines 3944--3944 []@texttt ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/ope ndap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5[] Overfull \hbox (658.79478pt too wide) in paragraph at lines 3946--3946 []@texttt ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u _velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtof s_glo_2ds_forecast_daily_prog ~/foo.nc[] [42] Overfull \hbox (95.42339pt too wide) in paragraph at lines 4019--4019 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [43] [44] [45] [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 4423--4423 []@texttt # Convert file with groups, multiple record dimensions + netCDF4 ato mic types[] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5291--5291 []@texttt ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /ces m to /[] [58] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5446--5446 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5446--5446 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 5446--5446 [][] Overfull \hbox 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too wide) in paragraph at lines 5640--5640 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 5640--5640 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5640--5640 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5640--5640 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5640--5640 [][] [63] Overfull \hbox (43.6852pt too wide) in paragraph at lines 5640--5640 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5640--5640 [][] Overfull \hbox (193.15108pt too wide) in paragraph at lines 5640--5640 [][] Overfull \hbox (440.34465pt too wide) in paragraph at lines 5640--5640 [][] [64] [65] [66] [67] [68] [69] [70] Underfull \hbox (badness 10000) in paragraph at lines 6178--6184 []@textrm Long op-tions: `@texttt --mro[]@textrm '[] `@texttt --dimension [71] Overfull \hbox (43.6852pt too wide) in paragraph at lines 6271--6271 []@texttt ncra -O -d time,1850-03-01T00:00:01,,8760,744,24 -n 150,4,1 1850.nc clm_drn.nc[] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] Overfull \hbox (176.23434pt too wide) in paragraph at lines 7042--7042 [][] Overfull \hbox (72.75797pt too wide) in paragraph at lines 7042--7042 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7176--7176 [][] [82] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 7176--7176 [][] [83] Overfull \hbox (267.88402pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (262.13533pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (175.90501pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (302.37614pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (802.51198pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (584.06184pt too wide) in paragraph at lines 7176--7176 [][] [84] Overfull \hbox (60.93126pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (578.31316pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (198.89977pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (1020.96211pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 7211--7211 [][] [85] [86] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] [87] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7360--7360 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7360--7360 [][] Underfull \hbox (badness 10000) in paragraph at lines 7394--7402 []@textrm `@texttt --rnr=@textttsl rnr_thr[]@textrm '[] or `@texttt --rgr_rnr=@ textttsl rnr_thr[]@textrm '[] or `@texttt --renormalize=@textttsl rnr_thr[]@tex trm '[] or [88] [89] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (135.6642pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 7577--7577 [][] [90] [91] [92] [93] [94] [95] Overfull \hbox (55.18257pt too wide) in paragraph at lines 8102--8102 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8102--8102 [][] [96] [97] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8242--8242 [][] [98] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8301--8301 []@texttt # Average seasonally contiguous climatological monthly means into NH winter[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8306--8306 []@texttt ncra --cb=2014,2016,1,12,0 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8308--8308 []@texttt ncra --cb=2014,2016,1,12,0 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] [99] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8327--8327 []@texttt # Average seasonally discontiguous diurnally resolved means into a s eason[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8330--8330 []@texttt nces --cb=2014,2016,1,12,8 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8331--8331 []@texttt # Reduce twelve diurnally resolved months to make into an annual cli matology[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8332--8332 []@texttt nces --cb=2014,2016,1,12,8 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] [100] [101] Overfull \hbox (43.6852pt too wide) in paragraph at lines 8499--8499 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8499--8499 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 8499--8499 [][] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9776--9776 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9776--9776 [][] [119] [120] [121] [122] [123] [124] [125] [126] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10469--10469 [][] [127] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10469--10469 [][] Underfull \hbox (badness 10000) in paragraph at lines 10471--10478 []@textrm These @reducedrm NSD[] @textrm al-go-rithms write an algorithm- [128] [129] [130] [131] Overfull \hbox (55.18257pt too wide) in paragraph at lines 10934--10934 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h 0.0001-01.nc[] [132] [133] [134] [135] [136] [137] Overfull \hbox (78.17732pt too wide) in paragraph at lines 11345--11345 [][] [138] [139] [140] [141] [142] [143] [144] [145] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12057--12057 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12064--12064 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [146] [147] [148] [149] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12443--12443 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12444--12444 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 12445--12445 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12446--12446 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12454--12454 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [150] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12496--12496 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [151] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12571--12571 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [152] [153] [154] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12759--12759 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [155] [156] Overfull \hbox (112.66945pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (193.15108pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] [157] [158] Underfull \hbox (badness 6741) in paragraph at lines 13197--13242 @texttt areaTriangle[]@textrm , @texttt cellMask[]@textrm , @texttt cellsOnCell []@textrm , @texttt cellsOnEdge[]@textrm , @texttt cellsOnVertex[]@textrm , @te xttt dcEdge[]@textrm , [159] [160] [161] [162] Chapter 4 Underfull \hbox (badness 10000) in paragraph at lines 13611--13632 @texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by [163] [164] [165] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13695--13695 []@texttt [-D @textttsl dbg@texttt ] [-F] [-f] [--glb ...] [-H] [-h] [--hdf] [ --hdr_pad @textttsl nbr@texttt ] [--hpss][] [166] [167] [168] [169] [170] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14103--14103 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14106--14106 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [171] [172] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14263--14263 [][] [173] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14303--14303 []@texttt (C) var_out=array(val_srt,val_inc,/$dmn1,$dmn2...,$dmnN/); // Multi- dimensional output[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14320--14320 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] [174] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14349--14349 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [175] [176] 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// n 3 type double[] [190] [191] Underfull \hbox (badness 10000) in paragraph at lines 15520--15529 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 15539--15539 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 15581--15581 [][] [192] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15581--15581 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 15581--15581 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15581--15581 [][] [193] Overfull \hbox (43.6852pt too wide) in paragraph at lines 15672--15672 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] [194] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15697--15697 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [195] [196] [197] Overfull \hbox (147.16158pt too wide) in paragraph at lines 15899--15899 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] [198] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15916--15916 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [199] [200] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16049--16049 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16049--16049 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16049--16049 [][] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16057--16057 [][] [201] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16125--16125 [][] [202] Overfull \hbox (244.88927pt too wide) in paragraph at lines 16196--16196 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 16196--16196 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16208--16208 [][] [203] [204] Overfull \hbox (89.6747pt too wide) in paragraph at lines 16336--16336 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 16353--16353 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 16386--16386 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [205] [206] [207] [208] Overfull \hbox (12.86244pt too wide) in paragraph at lines 16670--16671 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 16678--16679 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 16682--16683 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 16686--16687 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 16690--16691 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 16706--16707 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 16711--16712 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 16729--16729 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 16730--16730 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 16737--16737 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 16762--16763 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 16841--16842 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 16842--16843 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 16843--16844 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 16844--16844 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 16844--16845 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 16853--16854 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 16862--16863 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 16863--16863 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 16865--16866 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 16866--16866 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 16927--16927 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [209] [210] [211] [212] [213] [214] [215] [216] Underfull \hbox (badness 10000) in paragraph at lines 17004--17006 []@texttt status=@textbf gsl[]fit[]linear Underfull \hbox (badness 10000) in paragraph at lines 17017--17018 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ Underfull \hbox (badness 10000) in paragraph at lines 17035--17036 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ [217] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17060--17060 [][] Overfull \hbox (129.91551pt too wide) in paragraph at lines 17087--17087 [][] Overfull \hbox (106.92076pt too wide) in paragraph at lines 17087--17087 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 17087--17087 [][] [218] Overfull \hbox (141.41289pt too wide) in paragraph at lines 17103--17103 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 17104--17104 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 17105--17105 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17112--17112 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 17113--17113 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 17114--17114 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [219] [220] Overfull \hbox (175.90501pt too wide) in paragraph at lines 17220--17220 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17222--17222 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [221] [222] [223] [224] Underfull \hbox (badness 10000) in paragraph at lines 17745--17761 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: [225] Underfull \hbox (badness 10000) in paragraph at lines 17805--17821 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 17891--17901 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [226] [227] Overfull \hbox (26.43913pt too wide) in paragraph at lines 18104--18104 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18104--18104 [][] [228] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18186--18186 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 18192--18192 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [229] [230] [231] [232] [233] [234] [235] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18820--18820 [][] [236] Overfull \hbox (20.69046pt too wide) in paragraph at lines 18875--18875 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl b ...] [-H] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss][] [237] [238] [239] [240] [241] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19302--19302 []@texttt [-d @textttsl dbg_lvl@texttt ] [--d2f] [--dpf=@textttsl dpf@texttt ] [--dpt_fl=@textttsl dpt_fl@texttt ] [-E @textttsl yr_prv@texttt ] [-e @texttts l yr_end@texttt ][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 19306--19306 []@texttt [-n @textttsl nco_opt@texttt ] [--no_cll_msr] [--no_frm_trm] [--no_n tv_tms] [--no_stg_grd] [--no_stdin][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19309--19309 []@texttt [-S @textttsl yr_prv@texttt ] [-s @textttsl yr_srt@texttt ] [--seaso ns=@textttsl csn_lst@texttt ] [--sgs_frc=@textttsl sgs_frc@texttt ] [--split][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19310--19310 []@texttt [-t @textttsl thr_nbr@texttt ] [--tpd=@textttsl tpd@texttt ] [--uio] [-v @textttsl var_lst@texttt ] [--var_xtr=@textttsl var_xtr@texttt ] [--versio n][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 19358--19358 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [242] [243] [244] [245] [246] [247] [248] [249] [250] Overfull \hbox (38.26584pt too wide) in paragraph at lines 20221--20221 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 20222--20222 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [251] [252] [253] Overfull \hbox (14.94176pt too wide) in paragraph at lines 20520--20520 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20522--20522 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [254] Overfull \hbox (20.69044pt too wide) in paragraph at lines 20605--20605 [][] [255] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20650--20650 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [256] [257] Underfull \hbox (badness 10000) in paragraph at lines 20824--20824 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - Underfull \hbox (badness 10000) in paragraph at lines 20825--20825 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 20855--20855 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20861--20861 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 20862--20862 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] [258] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] [259] Overfull \hbox (49.43388pt too wide) in paragraph at lines 21001--21001 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21008--21008 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 21010--21010 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [260] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21078--21078 [][] [261] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21084--21084 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 21111--21111 [][] [262] [263] [264] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21338--21338 [][] [265] [266] [267] [268] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21649--21649 []@texttt [--cmp @textttsl cmp_sng@texttt ] [--cnk_byt @textttsl sz_byt@texttt ] [--cnk_csh @textttsl sz_byt@texttt ] [--cnk_dmn @textttsl nm@texttt ,@texttt sl sz_lmn@texttt ][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21655--21655 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 21656--21656 []@texttt [-O] [-o @textttsl output- [269] [270] [271] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21895--21895 []@texttt nces -O ~/1.nc ~/2.nc ~/2.nc ~/out.nc # Clumsy, limited to integer w eights[] [272] [273] [274] Overfull \hbox (43.6852pt too wide) in paragraph at lines 22167--22167 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [275] [276] [277] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22421--22421 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 22422--22422 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 22425--22425 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 22426--22426 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [278] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22510--22510 []@texttt 1964-03-13T21:09:0.000000[] [279] [280] Overfull \hbox (72.75797pt too wide) in paragraph at lines 22630--22630 [][] Overfull \hbox (135.99353pt too wide) in paragraph at lines 22630--22630 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 22630--22630 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 22630--22630 [][] [281] Overfull \hbox (204.97778pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (130.24484pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (181.98303pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (181.98303pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (84.25534pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (38.26584pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22693--22693 [][] [282] Overfull \hbox (130.24484pt too wide) in paragraph at lines 22772--22772 [][] Overfull \hbox (170.48566pt too wide) in paragraph at lines 22772--22772 [][] Overfull \hbox (170.48566pt too wide) in paragraph at lines 22772--22772 [][] Overfull \hbox (84.25534pt too wide) in paragraph at lines 22772--22772 [][] Overfull \hbox (38.26584pt too wide) in paragraph at lines 22772--22772 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22772--22772 [][] Overfull \hbox (204.97778pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (130.24484pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (199.2291pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (199.2291pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (164.73697pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (118.74747pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (130.24484pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (176.23434pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (176.23434pt too wide) in paragraph at lines 22812--22812 [][] [283] Overfull \hbox (164.73697pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (118.74747pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22812--22812 [][] [284] [285] Overfull \hbox (147.4909pt too wide) in paragraph at lines 23023--23023 [][] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23044--23044 [][] Overfull \hbox (61.26059pt too wide) in paragraph at lines 23058--23058 []@texttt ncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is sometimes named...nc gen[] Overfull \hbox (112.99878pt too wide) in paragraph at lines 23059--23059 []@texttt ncgen -b -o in.hdf in.cdl # Fails: Some valid netCDF CDL brea ks HDF ncgen[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 23060--23060 []@texttt hncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is hncgen in some RPM p ackages[] Overfull \hbox (95.75272pt too wide) in paragraph at lines 23061--23061 []@texttt h4_ncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is h4_ncgen in Anaconda packages[] [286] Overfull \hbox (118.74747pt too wide) in paragraph at lines 23062--23062 []@texttt ncgen-hdf -b -o hdf.hdf hdf.cdl # HDF ncgen is ncgen-hdf in some De bian packages[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 23063--23063 []@texttt hdp dumpsds hdf.hdf # ncdump/h5dump-equivalent for HDF4 [] Overfull \hbox (44.01453pt too wide) in paragraph at lines 23064--23064 []@texttt h4_ncdump dumpsds hdf.hdf # ncdump/h5dump-equivalent for HDF4 [] [287] Overfull \hbox (61.26059pt too wide) in paragraph at lines 23149--23149 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out .nc[] [288] Overfull \hbox (549.89905pt too wide) in paragraph at lines 23262--23262 [][] Overfull \hbox (463.66873pt too wide) in paragraph at lines 23262--23262 [][] [289] Overfull \hbox (71.44443pt too wide) in paragraph at lines 23292--23292 [][] Overfull \hbox (94.43918pt too wide) in paragraph at lines 23292--23292 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23292--23292 [][] [290] Overfull \hbox (123.18262pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (123.18262pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (111.68524pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (232.40768pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23396--23396 [][] [291] [292] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23562--23562 [][] [293] Overfull \hbox (95.75272pt too wide) in paragraph at lines 23644--23644 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0. 123456789[] Overfull \hbox (193.48041pt too wide) in paragraph at lines 23647--23647 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567, 0.12345678, 0.123456789 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23652--23652 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0 .123 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23736--23736 [][] [294] Overfull \hbox (147.4909pt too wide) in paragraph at lines 23779--23779 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 23779--23779 [][] Underfull \hbox (badness 10000) in paragraph at lines 23794--23809 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 23827--23827 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 23827--23827 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 23827--23827 [][] [295] Overfull \hbox (26.76846pt too wide) in paragraph at lines 23827--23827 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23902--23902 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 23915--23915 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 23923--23923 [][] [296] Overfull \hbox (262.13533pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (256.38664pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (313.87352pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (986.46999pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (170.15633pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (256.38664pt too wide) in paragraph at lines 24025--24025 [][] [297] Overfull \hbox (164.40764pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (371.3604pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 24025--24025 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24025--24025 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 24025--24025 [][] [298] Overfull \hbox (26.43913pt too wide) in paragraph at lines 24105--24105 []@texttt # Change values to be sure original values are not copied in followi ng step[] [299] [300] [301] Overfull \hbox (32.18784pt too wide) in paragraph at lines 24326--24326 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [- v @textttsl var@texttt [,[]]] [-X ...] [-x][] [302] [303] Underfull \hbox (badness 10000) in paragraph at lines 24520--24525 []@textsl pck[]map[] @textrm key val-ues: `@texttt dbl_flt[]@textrm '[], `@tex ttt pck_map_dbl_flt[]@textrm '[], `@texttt dbl_sgl[]@textrm '[], [304] Underfull \hbox (badness 10000) in paragraph at lines 24526--24532 []@textsl pck[]map[] @textrm key val-ues: `@texttt flt_dbl[]@textrm '[], `@tex ttt pck_map_flt_dbl[]@textrm '[], `@texttt sgl_dbl[]@textrm '[], [305] [306] [307] [308] [309] Overfull \hbox (55.18257pt too wide) in paragraph at 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[][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [398] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [399] [400] Overfull \hbox (60.93126pt too wide) in paragraph at lines 30857--30857 [][] Chapter 9 [401] [402] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31167--31167 [][] [403] [404] [405] [406] Overfull \hbox (37.93651pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 31167--31167 [][] [407] Overfull \hbox (693.28691pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31167--31167 [][] [408] Chapter 10 [409] [410] (General Index) [411] [412] [413] [414] ) (see the transcript file for additional information) Output written on nco.pdf (418 pages, 1739100 bytes). Transcript written on nco.log. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-5.1.4/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) 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paragraph at lines 6178--6184 []@textrm Long op-tions: `@texttt --mro[]@textrm '[] `@texttt --dimension [71] Overfull \hbox (43.6852pt too wide) in paragraph at lines 6271--6271 []@texttt ncra -O -d time,1850-03-01T00:00:01,,8760,744,24 -n 150,4,1 1850.nc clm_drn.nc[] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] Overfull \hbox (176.23434pt too wide) in paragraph at lines 7042--7042 [][] Overfull \hbox (72.75797pt too wide) in paragraph at lines 7042--7042 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] [82] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] 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wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (578.31316pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (198.89977pt too wide) in paragraph at lines 7176--7176 [][] [84] Overfull \hbox (101.17207pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (1020.96211pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 7211--7211 [][] [85] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 7331--7331 [][] [86] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7360--7360 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7360--7360 [][] [87] Underfull \hbox (badness 10000) in paragraph at lines 7394--7402 []@textrm `@texttt --rnr=@textttsl rnr_thr[]@textrm '[] or `@texttt --rgr_rnr=@ textttsl rnr_thr[]@textrm '[] or `@texttt --renormalize=@textttsl rnr_thr[]@tex trm '[] or [88] [89] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (135.6642pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 7577--7577 [][] [90] [91] [92] [93] [94] [95] Overfull \hbox (55.18257pt too wide) in paragraph at lines 8102--8102 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8102--8102 [][] [96] [97] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8242--8242 [][] [98] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8301--8301 []@texttt # Average seasonally contiguous climatological monthly means into NH winter[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8306--8306 []@texttt ncra --cb=2014,2016,1,12,0 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8308--8308 []@texttt ncra --cb=2014,2016,1,12,0 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8327--8327 []@texttt # Average seasonally discontiguous diurnally resolved means into a s eason[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8330--8330 []@texttt nces --cb=2014,2016,1,12,8 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8331--8331 []@texttt # Reduce twelve diurnally resolved months to make into an annual cli matology[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8332--8332 []@texttt nces --cb=2014,2016,1,12,8 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] [99] [100] Overfull \hbox (43.6852pt too wide) in paragraph at lines 8499--8499 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8499--8499 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 8499--8499 [][] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9776--9776 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9776--9776 [][] [118] [119] [120] [121] [122] [123] [124] [125] [126] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10469--10469 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10469--10469 [][] Underfull \hbox (badness 10000) in paragraph at lines 10471--10478 []@textrm These @reducedrm NSD[] @textrm al-go-rithms write an algorithm- [127] [128] [129] [130] [131] Overfull \hbox (55.18257pt too wide) in paragraph at lines 10934--10934 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h 0.0001-01.nc[] [132] [133] [134] [135] [136] Overfull \hbox (78.17732pt too wide) in paragraph at lines 11345--11345 [][] [137] [138] [139] [140] [141] [142] [143] [144] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12057--12057 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12064--12064 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [145] [146] [147] [148] [149] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12443--12443 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12444--12444 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 12445--12445 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12446--12446 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12454--12454 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [150] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12496--12496 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [151] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12571--12571 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [152] [153] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12759--12759 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [154] [155] Overfull \hbox (112.66945pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] [156] Overfull \hbox (78.17732pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (193.15108pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] [157] [158] Underfull \hbox (badness 6741) in paragraph at lines 13197--13242 @texttt areaTriangle[]@textrm , @texttt cellMask[]@textrm , @texttt cellsOnCell []@textrm , @texttt cellsOnEdge[]@textrm , @texttt cellsOnVertex[]@textrm , @te xttt dcEdge[]@textrm , [159] [160] [161] Chapter 4 Underfull \hbox (badness 10000) in paragraph at lines 13611--13632 @texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by [162] [163] [164] [165] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13695--13695 []@texttt [-D @textttsl dbg@texttt ] [-F] [-f] [--glb ...] [-H] [-h] [--hdf] [ --hdr_pad @textttsl nbr@texttt ] [--hpss][] [166] [167] [168] [169] [170] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14103--14103 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14106--14106 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [171] [172] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14263--14263 [][] [173] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14303--14303 []@texttt (C) var_out=array(val_srt,val_inc,/$dmn1,$dmn2...,$dmnN/); // Multi- dimensional output[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14320--14320 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] [174] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14349--14349 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [175] [176] [177] [178] Overfull \hbox (118.41814pt too wide) in paragraph at lines 14623--14623 [][] [179] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14728--14728 [][] [180] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14747--14747 [][] [181] [182] Overfull \hbox (83.92601pt too wide) in paragraph at lines 14917--14917 [][] [183] Overfull \hbox (95.42339pt too wide) in paragraph at lines 14943--14943 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14954--14954 [][] [184] Overfull \hbox (55.18257pt too wide) in paragraph at lines 15000--15000 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15000--15000 [][] [185] [186] [187] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15252--15252 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc foo.nc[] [188] [189] Overfull \hbox (60.93126pt too wide) in paragraph at lines 15394--15394 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [190] [191] Underfull \hbox (badness 10000) in paragraph at lines 15520--15529 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 15539--15539 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 15581--15581 [][] [192] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15581--15581 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 15581--15581 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15581--15581 [][] [193] Overfull \hbox (43.6852pt too wide) in paragraph at lines 15672--15672 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] [194] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15697--15697 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [195] [196] [197] Overfull \hbox (147.16158pt too wide) in paragraph at lines 15899--15899 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] [198] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15916--15916 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [199] [200] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16049--16049 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16049--16049 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16049--16049 [][] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16057--16057 [][] [201] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16125--16125 [][] [202] Overfull \hbox (244.88927pt too wide) in paragraph at lines 16196--16196 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 16196--16196 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16208--16208 [][] [203] [204] Overfull \hbox (89.6747pt too wide) in paragraph at lines 16336--16336 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 16353--16353 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 16386--16386 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [205] [206] [207] [208] Overfull \hbox (12.86244pt too wide) in paragraph at lines 16670--16671 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 16678--16679 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 16682--16683 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 16686--16687 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 16690--16691 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 16706--16707 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 16711--16712 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 16729--16729 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 16730--16730 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 16737--16737 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 16762--16763 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 16841--16842 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 16842--16843 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 16843--16844 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 16844--16844 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 16844--16845 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 16853--16854 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 16862--16863 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 16863--16863 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 16865--16866 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 16866--16866 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 16927--16927 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [209] [210] [211] [212] [213] [214] [215] [216] Underfull \hbox (badness 10000) in paragraph at lines 17004--17006 []@texttt status=@textbf gsl[]fit[]linear Underfull \hbox (badness 10000) in paragraph at lines 17017--17018 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ Underfull \hbox (badness 10000) in paragraph at lines 17035--17036 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ [217] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17060--17060 [][] Overfull \hbox (129.91551pt too wide) in paragraph at lines 17087--17087 [][] Overfull \hbox (106.92076pt too wide) in paragraph at lines 17087--17087 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 17087--17087 [][] [218] Overfull \hbox (141.41289pt too wide) in paragraph at lines 17103--17103 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 17104--17104 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 17105--17105 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17112--17112 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 17113--17113 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 17114--17114 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [219] [220] Overfull \hbox (175.90501pt too wide) in paragraph at lines 17220--17220 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17222--17222 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [221] [222] [223] [224] Underfull \hbox (badness 10000) in paragraph at lines 17745--17761 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: [225] Underfull \hbox (badness 10000) in paragraph at lines 17805--17821 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 17891--17901 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [226] [227] Overfull \hbox (26.43913pt too wide) in paragraph at lines 18104--18104 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18104--18104 [][] [228] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18186--18186 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 18192--18192 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [229] [230] [231] [232] [233] [234] [235] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18820--18820 [][] [236] Overfull \hbox (20.69046pt too wide) in paragraph at lines 18875--18875 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl b ...] [-H] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss][] [237] [238] [239] [240] [241] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19302--19302 []@texttt [-d @textttsl dbg_lvl@texttt ] [--d2f] [--dpf=@textttsl dpf@texttt ] [--dpt_fl=@textttsl dpt_fl@texttt ] [-E @textttsl yr_prv@texttt ] [-e @texttts l yr_end@texttt ][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 19306--19306 []@texttt [-n @textttsl nco_opt@texttt ] [--no_cll_msr] [--no_frm_trm] [--no_n tv_tms] [--no_stg_grd] [--no_stdin][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19309--19309 []@texttt [-S @textttsl yr_prv@texttt ] [-s @textttsl yr_srt@texttt ] [--seaso ns=@textttsl csn_lst@texttt ] [--sgs_frc=@textttsl sgs_frc@texttt ] [--split][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19310--19310 []@texttt [-t @textttsl thr_nbr@texttt ] [--tpd=@textttsl tpd@texttt ] [--uio] [-v @textttsl var_lst@texttt ] [--var_xtr=@textttsl var_xtr@texttt ] [--versio n][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 19358--19358 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [242] [243] [244] [245] [246] [247] [248] [249] [250] Overfull \hbox (38.26584pt too wide) in paragraph at lines 20221--20221 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 20222--20222 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [251] [252] [253] Overfull \hbox (14.94176pt too wide) in paragraph at lines 20520--20520 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20522--20522 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [254] Overfull \hbox (20.69044pt too wide) in paragraph at lines 20605--20605 [][] [255] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20650--20650 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [256] [257] Underfull \hbox (badness 10000) in paragraph at lines 20824--20824 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - Underfull \hbox (badness 10000) in paragraph at lines 20825--20825 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 20855--20855 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20861--20861 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 20862--20862 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] [258] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] [259] Overfull \hbox (49.43388pt too wide) in paragraph at lines 21001--21001 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21008--21008 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 21010--21010 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [260] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21078--21078 [][] [261] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21084--21084 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 21111--21111 [][] [262] [263] [264] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21338--21338 [][] [265] [266] [267] [268] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21649--21649 []@texttt [--cmp @textttsl cmp_sng@texttt ] [--cnk_byt @textttsl sz_byt@texttt ] [--cnk_csh @textttsl sz_byt@texttt ] [--cnk_dmn @textttsl nm@texttt ,@texttt sl sz_lmn@texttt ][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21655--21655 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 21656--21656 []@texttt [-O] [-o @textttsl output- [269] [270] [271] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21895--21895 []@texttt nces -O ~/1.nc ~/2.nc ~/2.nc ~/out.nc # Clumsy, limited to integer w eights[] [272] [273] [274] Overfull \hbox (43.6852pt too wide) in paragraph at lines 22167--22167 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [275] [276] [277] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22421--22421 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 22422--22422 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 22425--22425 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 22426--22426 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [278] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22510--22510 []@texttt 1964-03-13T21:09:0.000000[] [279] [280] Overfull \hbox (72.75797pt too wide) in paragraph at lines 22630--22630 [][] Overfull \hbox (135.99353pt too wide) in paragraph at lines 22630--22630 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 22630--22630 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 22630--22630 [][] [281] Overfull \hbox (204.97778pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (130.24484pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (181.98303pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (181.98303pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (84.25534pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (38.26584pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22693--22693 [][] [282] Overfull \hbox (130.24484pt too wide) in paragraph at lines 22772--22772 [][] Overfull \hbox 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\hbox (130.24484pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (176.23434pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (176.23434pt too wide) in paragraph at lines 22812--22812 [][] [283] Overfull \hbox (164.73697pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (118.74747pt too wide) in paragraph at lines 22812--22812 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22812--22812 [][] [284] [285] Overfull \hbox (147.4909pt too wide) in paragraph at lines 23023--23023 [][] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23044--23044 [][] Overfull \hbox (61.26059pt too wide) in paragraph at lines 23058--23058 []@texttt ncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is sometimes named...nc gen[] Overfull \hbox (112.99878pt too wide) in paragraph at lines 23059--23059 []@texttt ncgen -b -o in.hdf in.cdl # Fails: Some valid netCDF CDL brea ks HDF ncgen[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 23060--23060 []@texttt hncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is hncgen in some RPM p ackages[] Overfull \hbox (95.75272pt too wide) in paragraph at lines 23061--23061 []@texttt h4_ncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is h4_ncgen in Anaconda packages[] [286] Overfull \hbox (118.74747pt too wide) in paragraph at lines 23062--23062 []@texttt ncgen-hdf -b -o hdf.hdf hdf.cdl # HDF ncgen is ncgen-hdf in some De bian packages[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 23063--23063 []@texttt hdp dumpsds hdf.hdf # ncdump/h5dump-equivalent for HDF4 [] Overfull \hbox (44.01453pt too wide) in paragraph at lines 23064--23064 []@texttt h4_ncdump dumpsds hdf.hdf # ncdump/h5dump-equivalent for HDF4 [] [287] Overfull \hbox (61.26059pt too wide) in paragraph at lines 23149--23149 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out .nc[] [288] Overfull \hbox (549.89905pt too wide) in paragraph at lines 23262--23262 [][] Overfull \hbox (463.66873pt too wide) in paragraph at lines 23262--23262 [][] [289] Overfull \hbox (71.44443pt too wide) in paragraph at lines 23292--23292 [][] Overfull \hbox (94.43918pt too wide) in paragraph at lines 23292--23292 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23292--23292 [][] [290] Overfull \hbox (123.18262pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (123.18262pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (111.68524pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (232.40768pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23396--23396 [][] [291] [292] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23562--23562 [][] [293] Overfull \hbox (95.75272pt too wide) in paragraph at lines 23644--23644 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0. 123456789[] Overfull \hbox (193.48041pt too wide) in paragraph at lines 23647--23647 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567, 0.12345678, 0.123456789 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23652--23652 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0 .123 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23736--23736 [][] [294] Overfull \hbox (147.4909pt too wide) in paragraph at lines 23779--23779 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 23779--23779 [][] Underfull \hbox (badness 10000) in paragraph at lines 23794--23809 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 23827--23827 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 23827--23827 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 23827--23827 [][] [295] Overfull \hbox (26.76846pt too wide) in paragraph at lines 23827--23827 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23902--23902 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 23915--23915 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 23923--23923 [][] [296] Overfull \hbox (262.13533pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox 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[][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (377.10909pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (129.91551pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (221.89452pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (129.91551pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 24025--24025 [][] [298] Overfull \hbox (26.43913pt too wide) in paragraph at lines 24105--24105 []@texttt # Change values to be sure original values are not copied in followi ng step[] [299] [300] [301] Overfull \hbox (32.18784pt too wide) in paragraph at lines 24326--24326 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [- v @textttsl var@texttt [,[]]] [-X ...] [-x][] [302] [303] Underfull \hbox (badness 10000) in paragraph at lines 24520--24525 []@textsl pck[]map[] @textrm key val-ues: `@texttt dbl_flt[]@textrm '[], `@tex ttt pck_map_dbl_flt[]@textrm '[], `@texttt dbl_sgl[]@textrm '[], [304] Underfull \hbox (badness 10000) in paragraph at lines 24526--24532 []@textsl pck[]map[] @textrm key val-ues: `@texttt flt_dbl[]@textrm '[], `@tex ttt pck_map_flt_dbl[]@textrm '[], `@texttt sgl_dbl[]@textrm '[], [305] [306] [307] [308] [309] Overfull \hbox (55.18257pt too wide) in paragraph at lines 24907--24907 []@texttt ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 24920--24920 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim ension[] [310] Underfull \hbox (badness 10000) in paragraph at lines 24976--24976 []@texttt [-O] [-o @textttsl output- [311] [312] [313] [314] Underfull \hbox (badness 10000) in paragraph at lines 25295--25295 []@texttt [-O] [-o @textttsl output- [315] [316] Overfull \hbox (20.69044pt too wide) in paragraph at lines 25430--25430 []@texttt [-M] [-m @textttsl map_fl@texttt ] [--mpi_nbr=@textttsl mpi_nbr@text tt ] [--mpi_pfx=@textttsl mpi_pfx@texttt ] [--msh_fl=@textttsl msh_fl@texttt ][ ] Overfull \hbox (118.41814pt too wide) in paragraph at lines 25431--25431 []@texttt [--msk_apl] [--msk_dst=@textttsl msk_dst@texttt ] [--msk_out=@texttt sl msk_out@texttt ] [--msk_src=@textttsl msk_src@texttt ] [--mss_val=@textttsl mss_val@texttt ][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 25433--25433 []@texttt [--no_add_fll] [--no_cll_msr] [--no_frm_trm] [--no_permute] [--no_st din] [--no_stg_grd][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 25443--25443 []@texttt [--vrt_in=@textttsl vrt_fl@texttt ] [--vrt_out=@textttsl vrt_fl@text tt ] [--vrt_ntp=@textttsl vrt_ntp@texttt ] [--vrt_xtr=@textttsl vrt_xtr@texttt ][] [317] [318] Underfull \hbox (badness 6741) in paragraph at lines 25702--25713 @texttt lonCell[]@textrm , @texttt lonEdge[]@textrm , @texttt lonVertex[]@textr m , @texttt maxLevelEdgeTop[]@textrm , @texttt meshDensity[]@textrm , @texttt n EdgesOnCell[]@textrm , [319] [320] Overfull \hbox (15.27109pt too wide) in paragraph at lines 25947--25947 [][] Overfull \hbox (84.25534pt too wide) in paragraph at lines 25959--25959 [][] [321] Underfull \hbox (badness 10000) in paragraph at lines 26044--26046 []@reducedrm MOAB[] Underfull \hbox (badness 10000) in paragraph at lines 26047--26052 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[333] [334] Overfull \hbox (684.99643pt too wide) in paragraph at lines 27266--27325 @texttt Time,depth,nVertInterfaces,nVertLevels,nVertLevelsP1,nZBGCTracers,nBio LayersP1,nAlgaeIceLayers,nDisIronIceLayers,nIceLayers,maxEdges,MaxEdges2,nCateg ories,R3,ONE,TWO,FOUR,nEdges,nCells[]@textrm , [335] [336] Overfull \hbox (15.27109pt too wide) in paragraph at lines 27381--27381 [][] Overfull \hbox (15.27109pt too wide) in paragraph at lines 27404--27404 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27404--27404 [][] [337] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27482--27482 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 27529--27529 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27529--27529 [][] [338] [339] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27647--27647 []@texttt ncremap --sgs_frc=aice --sgs_msk=tmask --sgs_nrm=100 in.nc out.nc[] Overfull \hbox (55.5119pt too wide) in paragraph at lines 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[][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [398] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [399] [400] Overfull \hbox (60.93126pt too wide) in paragraph at lines 30857--30857 [][] Chapter 9 [401] [402] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31167--31167 [][] [403] [404] [405] [406] Overfull \hbox (37.93651pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 31167--31167 [][] [407] Overfull \hbox (693.28691pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31167--31167 [][] [408] Chapter 10 [409] [410] (General Index) [411] [412] (./nco.cps [413] Overfull \hbox (37.49283pt too wide) in paragraph at lines 132--132 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],[\smallttsl subcycle\smalltt ],[\smallttsl interleave \smalltt ][] Overfull \hbox (32.76788pt too wide) in paragraph at lines 141--141 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],\smallttsl subcycle\smalltt ],[\smallttsl interleave\ smalltt ][] [414] [415] [416] [417] [418] Overfull \hbox (37.49283pt too wide) in paragraph at lines 727--727 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],[\smallttsl subcycle\smalltt ],[\smallttsl interleave \smalltt ][] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] Overfull \hbox (9.54256pt too wide) in paragraph at lines 2087--2087 \smalltt QuantizeBitGroomRoundNumberOfSignificantDigits[] [431] Overfull \hbox (23.71739pt too wide) in paragraph at lines 2093--2093 \smalltt QuantizeGranularBitRoundNumberOfSignificantDigits[] [432] [433] [434]) [435] [436] ) (see the transcript file for additional information) Output written on nco.pdf (444 pages, 2010775 bytes). Transcript written on nco.log. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-5.1.4/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) 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wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (578.31316pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (198.89977pt too wide) in paragraph at lines 7176--7176 [][] [84] Overfull \hbox (101.17207pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (1020.96211pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 7211--7211 [][] [85] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 7331--7331 [][] [86] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7360--7360 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7360--7360 [][] [87] Underfull \hbox (badness 10000) in paragraph at lines 7394--7402 []@textrm `@texttt --rnr=@textttsl rnr_thr[]@textrm '[] or `@texttt --rgr_rnr=@ textttsl rnr_thr[]@textrm '[] or `@texttt --renormalize=@textttsl rnr_thr[]@tex trm '[] or [88] [89] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (135.6642pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 7577--7577 [][] [90] [91] [92] [93] [94] [95] Overfull \hbox (55.18257pt too wide) in paragraph at lines 8102--8102 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8102--8102 [][] [96] [97] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8242--8242 [][] [98] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8301--8301 []@texttt # Average seasonally contiguous climatological monthly means into NH winter[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8306--8306 []@texttt ncra --cb=2014,2016,1,12,0 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8308--8308 []@texttt ncra --cb=2014,2016,1,12,0 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8327--8327 []@texttt # Average seasonally discontiguous diurnally resolved means into a s eason[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8330--8330 []@texttt nces --cb=2014,2016,1,12,8 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8331--8331 []@texttt # Reduce twelve diurnally resolved months to make into an annual cli matology[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8332--8332 []@texttt nces --cb=2014,2016,1,12,8 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] [99] [100] Overfull \hbox (43.6852pt too wide) in paragraph at lines 8499--8499 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8499--8499 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 8499--8499 [][] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9776--9776 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9776--9776 [][] [118] [119] [120] [121] [122] [123] [124] [125] [126] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10469--10469 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10469--10469 [][] Underfull \hbox (badness 10000) in paragraph at lines 10471--10478 []@textrm These @reducedrm NSD[] @textrm al-go-rithms write an algorithm- [127] [128] [129] [130] [131] Overfull \hbox (55.18257pt too wide) in paragraph at lines 10934--10934 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h 0.0001-01.nc[] [132] [133] [134] [135] [136] Overfull \hbox (78.17732pt too wide) in paragraph at lines 11345--11345 [][] [137] [138] [139] [140] [141] [142] [143] [144] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12057--12057 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12064--12064 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [145] [146] [147] [148] [149] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12443--12443 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12444--12444 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 12445--12445 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12446--12446 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12454--12454 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [150] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12496--12496 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [151] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12571--12571 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [152] [153] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12759--12759 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [154] [155] Overfull \hbox (112.66945pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] [156] Overfull \hbox (78.17732pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (193.15108pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12959--12959 [][] [157] [158] Underfull \hbox (badness 6741) in paragraph at lines 13197--13242 @texttt areaTriangle[]@textrm , @texttt cellMask[]@textrm , @texttt cellsOnCell []@textrm , @texttt cellsOnEdge[]@textrm , @texttt cellsOnVertex[]@textrm , @te xttt dcEdge[]@textrm , [159] [160] [161] Chapter 4 Underfull \hbox (badness 10000) in paragraph at lines 13611--13632 @texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by [162] [163] [164] [165] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13695--13695 []@texttt [-D @textttsl dbg@texttt ] [-F] [-f] [--glb ...] [-H] [-h] [--hdf] [ --hdr_pad @textttsl nbr@texttt ] [--hpss][] [166] [167] [168] [169] [170] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14103--14103 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14106--14106 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [171] [172] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14263--14263 [][] [173] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14303--14303 []@texttt (C) var_out=array(val_srt,val_inc,/$dmn1,$dmn2...,$dmnN/); // Multi- dimensional output[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14320--14320 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] [174] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14349--14349 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [175] [176] [177] [178] Overfull \hbox (118.41814pt too wide) in paragraph at lines 14623--14623 [][] [179] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14728--14728 [][] [180] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14747--14747 [][] [181] [182] Overfull \hbox (83.92601pt too wide) in paragraph at lines 14917--14917 [][] [183] Overfull \hbox (95.42339pt too wide) in paragraph at lines 14943--14943 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14954--14954 [][] [184] Overfull \hbox (55.18257pt too wide) in paragraph at lines 15000--15000 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15000--15000 [][] [185] [186] [187] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15252--15252 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc foo.nc[] [188] [189] Overfull \hbox (60.93126pt too wide) in paragraph at lines 15394--15394 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [190] [191] Underfull \hbox (badness 10000) in paragraph at lines 15520--15529 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 15539--15539 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 15581--15581 [][] [192] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15581--15581 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 15581--15581 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15581--15581 [][] [193] Overfull \hbox (43.6852pt too wide) in paragraph at lines 15672--15672 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] [194] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15697--15697 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [195] [196] [197] Overfull \hbox (147.16158pt too wide) in paragraph at lines 15899--15899 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] [198] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15916--15916 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [199] [200] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16049--16049 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16049--16049 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16049--16049 [][] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16057--16057 [][] [201] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16125--16125 [][] [202] Overfull \hbox (244.88927pt too wide) in paragraph at lines 16196--16196 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 16196--16196 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16208--16208 [][] [203] [204] Overfull \hbox (89.6747pt too wide) in paragraph at lines 16336--16336 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 16353--16353 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 16386--16386 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [205] [206] [207] [208] Overfull \hbox (12.86244pt too wide) in paragraph at lines 16670--16671 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 16678--16679 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 16682--16683 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 16686--16687 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 16690--16691 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 16706--16707 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 16711--16712 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 16729--16729 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 16730--16730 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 16737--16737 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 16762--16763 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 16841--16842 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 16842--16843 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 16843--16844 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 16844--16844 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 16844--16845 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 16853--16854 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 16862--16863 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 16863--16863 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 16865--16866 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 16866--16866 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 16927--16927 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [209] [210] [211] [212] [213] [214] [215] [216] Underfull \hbox (badness 10000) in paragraph at lines 17004--17006 []@texttt status=@textbf gsl[]fit[]linear Underfull \hbox (badness 10000) in paragraph at lines 17017--17018 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ Underfull \hbox (badness 10000) in paragraph at lines 17035--17036 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ [217] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17060--17060 [][] Overfull \hbox (129.91551pt too wide) in paragraph at lines 17087--17087 [][] Overfull \hbox (106.92076pt too wide) in paragraph at lines 17087--17087 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 17087--17087 [][] [218] Overfull \hbox (141.41289pt too wide) in paragraph at lines 17103--17103 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 17104--17104 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 17105--17105 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17112--17112 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 17113--17113 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 17114--17114 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [219] [220] Overfull \hbox (175.90501pt too wide) in paragraph at lines 17220--17220 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17222--17222 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [221] [222] [223] [224] Underfull \hbox (badness 10000) in paragraph at lines 17745--17761 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: [225] Underfull \hbox (badness 10000) in paragraph at lines 17805--17821 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 17891--17901 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [226] [227] Overfull \hbox (26.43913pt too wide) in paragraph at lines 18104--18104 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18104--18104 [][] [228] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18186--18186 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 18192--18192 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [229] [230] [231] [232] [233] [234] [235] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18820--18820 [][] [236] Overfull \hbox (20.69046pt too wide) in paragraph at lines 18875--18875 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl b ...] [-H] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss][] [237] [238] [239] [240] [241] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19302--19302 []@texttt [-d @textttsl dbg_lvl@texttt ] [--d2f] [--dpf=@textttsl dpf@texttt ] [--dpt_fl=@textttsl dpt_fl@texttt ] [-E @textttsl yr_prv@texttt ] [-e @texttts l yr_end@texttt ][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 19306--19306 []@texttt [-n @textttsl nco_opt@texttt ] [--no_cll_msr] [--no_frm_trm] [--no_n tv_tms] [--no_stg_grd] [--no_stdin][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19309--19309 []@texttt [-S @textttsl yr_prv@texttt ] [-s @textttsl yr_srt@texttt ] [--seaso ns=@textttsl csn_lst@texttt ] [--sgs_frc=@textttsl sgs_frc@texttt ] [--split][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19310--19310 []@texttt [-t @textttsl thr_nbr@texttt ] [--tpd=@textttsl tpd@texttt ] [--uio] [-v @textttsl var_lst@texttt ] [--var_xtr=@textttsl var_xtr@texttt ] [--versio n][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 19358--19358 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [242] [243] [244] [245] [246] [247] [248] [249] [250] Overfull \hbox (38.26584pt too wide) in paragraph at lines 20221--20221 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 20222--20222 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [251] [252] [253] Overfull \hbox (14.94176pt too wide) in paragraph at lines 20520--20520 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20522--20522 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [254] Overfull \hbox (20.69044pt too wide) in paragraph at lines 20605--20605 [][] [255] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20650--20650 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [256] [257] Underfull \hbox (badness 10000) in paragraph at lines 20824--20824 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - Underfull \hbox (badness 10000) in paragraph at lines 20825--20825 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 20855--20855 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20861--20861 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 20862--20862 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] [258] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20899--20899 [][] [259] Overfull \hbox (49.43388pt too wide) in paragraph at lines 21001--21001 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21008--21008 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 21010--21010 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [260] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21078--21078 [][] [261] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21084--21084 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 21111--21111 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 21111--21111 [][] [262] [263] [264] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21338--21338 [][] [265] [266] [267] [268] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21649--21649 []@texttt [--cmp @textttsl cmp_sng@texttt ] [--cnk_byt @textttsl sz_byt@texttt ] [--cnk_csh @textttsl sz_byt@texttt ] [--cnk_dmn @textttsl nm@texttt ,@texttt sl sz_lmn@texttt ][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21655--21655 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 21656--21656 []@texttt [-O] [-o @textttsl output- [269] [270] [271] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21895--21895 []@texttt nces -O ~/1.nc ~/2.nc ~/2.nc ~/out.nc # Clumsy, limited to integer w eights[] [272] [273] [274] Overfull \hbox (43.6852pt too wide) in paragraph at lines 22167--22167 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [275] [276] [277] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22421--22421 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 22422--22422 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 22425--22425 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 22426--22426 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [278] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22510--22510 []@texttt 1964-03-13T21:09:0.000000[] [279] [280] Overfull \hbox (72.75797pt too wide) in paragraph at lines 22630--22630 [][] Overfull \hbox (135.99353pt too wide) in paragraph at lines 22630--22630 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 22630--22630 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 22630--22630 [][] [281] Overfull \hbox (204.97778pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (130.24484pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (181.98303pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (181.98303pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (84.25534pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (38.26584pt too wide) in paragraph at lines 22693--22693 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22693--22693 [][] [282] Overfull \hbox (130.24484pt too wide) in paragraph at lines 22772--22772 [][] Overfull \hbox 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brea ks HDF ncgen[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 23060--23060 []@texttt hncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is hncgen in some RPM p ackages[] Overfull \hbox (95.75272pt too wide) in paragraph at lines 23061--23061 []@texttt h4_ncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is h4_ncgen in Anaconda packages[] [286] Overfull \hbox (118.74747pt too wide) in paragraph at lines 23062--23062 []@texttt ncgen-hdf -b -o hdf.hdf hdf.cdl # HDF ncgen is ncgen-hdf in some De bian packages[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 23063--23063 []@texttt hdp dumpsds hdf.hdf # ncdump/h5dump-equivalent for HDF4 [] Overfull \hbox (44.01453pt too wide) in paragraph at lines 23064--23064 []@texttt h4_ncdump dumpsds hdf.hdf # ncdump/h5dump-equivalent for HDF4 [] [287] Overfull \hbox (61.26059pt too wide) in paragraph at lines 23149--23149 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out .nc[] [288] Overfull \hbox (549.89905pt too wide) in paragraph at lines 23262--23262 [][] Overfull \hbox (463.66873pt too wide) in paragraph at lines 23262--23262 [][] [289] Overfull \hbox (71.44443pt too wide) in paragraph at lines 23292--23292 [][] Overfull \hbox (94.43918pt too wide) in paragraph at lines 23292--23292 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23292--23292 [][] [290] Overfull \hbox (123.18262pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23357--23357 [][] Overfull \hbox (123.18262pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (111.68524pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (232.40768pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 23396--23396 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23396--23396 [][] [291] [292] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23562--23562 [][] [293] Overfull \hbox (95.75272pt too wide) in paragraph at lines 23644--23644 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0. 123456789[] Overfull \hbox (193.48041pt too wide) in paragraph at lines 23647--23647 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567, 0.12345678, 0.123456789 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23652--23652 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0 .123 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23736--23736 [][] [294] Overfull \hbox (147.4909pt too wide) in paragraph at lines 23779--23779 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 23779--23779 [][] Underfull \hbox (badness 10000) in paragraph at lines 23794--23809 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 23827--23827 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 23827--23827 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 23827--23827 [][] [295] Overfull \hbox (26.76846pt too wide) in paragraph at lines 23827--23827 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23902--23902 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 23915--23915 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 23923--23923 [][] [296] Overfull \hbox (262.13533pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox 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[][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (377.10909pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (129.91551pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (221.89452pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (129.91551pt too wide) in paragraph at lines 24025--24025 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 24025--24025 [][] [298] Overfull \hbox (26.43913pt too wide) in paragraph at lines 24105--24105 []@texttt # Change values to be sure original values are not copied in followi ng step[] [299] [300] [301] Overfull \hbox (32.18784pt too wide) in paragraph at lines 24326--24326 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [- v @textttsl var@texttt [,[]]] [-X ...] [-x][] [302] [303] Underfull \hbox (badness 10000) in paragraph at lines 24520--24525 []@textsl pck[]map[] @textrm key val-ues: `@texttt dbl_flt[]@textrm '[], `@tex ttt pck_map_dbl_flt[]@textrm '[], `@texttt dbl_sgl[]@textrm '[], [304] Underfull \hbox (badness 10000) in paragraph at lines 24526--24532 []@textsl pck[]map[] @textrm key val-ues: `@texttt flt_dbl[]@textrm '[], `@tex ttt pck_map_flt_dbl[]@textrm '[], `@texttt sgl_dbl[]@textrm '[], [305] [306] [307] [308] [309] Overfull \hbox (55.18257pt too wide) in paragraph at lines 24907--24907 []@texttt ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 24920--24920 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim ension[] [310] Underfull \hbox (badness 10000) in paragraph at lines 24976--24976 []@texttt [-O] [-o @textttsl output- [311] [312] [313] [314] Underfull \hbox (badness 10000) in paragraph at lines 25295--25295 []@texttt [-O] [-o @textttsl output- [315] [316] Overfull \hbox (20.69044pt too wide) in paragraph at lines 25430--25430 []@texttt [-M] [-m @textttsl map_fl@texttt ] [--mpi_nbr=@textttsl mpi_nbr@text tt ] [--mpi_pfx=@textttsl mpi_pfx@texttt ] [--msh_fl=@textttsl msh_fl@texttt ][ ] Overfull \hbox (118.41814pt too wide) in paragraph at lines 25431--25431 []@texttt [--msk_apl] [--msk_dst=@textttsl msk_dst@texttt ] [--msk_out=@texttt sl msk_out@texttt ] [--msk_src=@textttsl msk_src@texttt ] [--mss_val=@textttsl mss_val@texttt ][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 25433--25433 []@texttt [--no_add_fll] [--no_cll_msr] [--no_frm_trm] [--no_permute] [--no_st din] [--no_stg_grd][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 25443--25443 []@texttt [--vrt_in=@textttsl vrt_fl@texttt ] [--vrt_out=@textttsl vrt_fl@text tt ] [--vrt_ntp=@textttsl vrt_ntp@texttt ] [--vrt_xtr=@textttsl vrt_xtr@texttt ][] [317] [318] Underfull \hbox (badness 6741) in paragraph at lines 25702--25713 @texttt lonCell[]@textrm , @texttt lonEdge[]@textrm , @texttt lonVertex[]@textr m , @texttt maxLevelEdgeTop[]@textrm , @texttt meshDensity[]@textrm , @texttt n EdgesOnCell[]@textrm , [319] [320] Overfull \hbox (15.27109pt too wide) in paragraph at lines 25947--25947 [][] Overfull \hbox (84.25534pt too wide) in paragraph at lines 25959--25959 [][] [321] Underfull \hbox (badness 10000) in paragraph at lines 26044--26046 []@reducedrm MOAB[] Underfull \hbox (badness 10000) in paragraph at lines 26047--26052 []@reducedrm MOAB[] @textrm op-tions: `@texttt --method cgll --order 4 --metho d fv Underfull \hbox (badness 10000) in paragraph at lines 26056--26058 []@reducedrm TR[] @textrm op-tions: `@texttt --in_type fv --in_np 2 --out_type cgll Underfull \hbox (badness 10000) in paragraph at lines 26059--26061 []@reducedrm TR[] @textrm op-tions: `@texttt --in_type cgll --in_np 4 --out_ty pe fv Underfull \hbox (badness 10000) in paragraph at lines 26059--26061 []@reducedrm MOAB[] @textrm op-tions: `@texttt --method cgll --order 4 --metho d fv Underfull \hbox (badness 10000) in paragraph at lines 26062--26064 []@reducedrm TR[] @textrm op-tions: `@texttt --in_type fv --in_np 1 --out_type cgll [322] Underfull \hbox (badness 10000) in paragraph at lines 26065--26067 []@reducedrm TR[] Underfull \hbox (badness 10000) in paragraph at lines 26065--26067 []@reducedrm MOAB[] @textrm op-tions: `@texttt --method cgll --order 4 --metho d cgll [323] [324] Overfull \hbox (107.25009pt too wide) in paragraph at lines 26230--26230 [][] Overfull \hbox (95.75272pt too wide) in paragraph at lines 26230--26230 [][] [325] [326] [327] [328] Overfull \hbox (55.5119pt too wide) in paragraph at lines 26655--26655 [][] Overfull \hbox (141.74222pt too wide) in paragraph at lines 26655--26655 [][] Overfull \hbox (176.23434pt too wide) in paragraph at lines 26655--26655 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 26655--26655 [][] Overfull \hbox (61.26059pt too wide) in paragraph at lines 26655--26655 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 26655--26655 [][] Overfull \hbox (135.99353pt too wide) in paragraph at lines 26655--26655 [][] Overfull \hbox (204.97778pt too wide) in paragraph at lines 26664--26664 [][] [329] [330] Overfull \hbox (32.51715pt too wide) in paragraph at lines 26903--26903 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 26903--26903 [][] [331] Overfull \hbox (61.26059pt too wide) in paragraph at lines 26975--26975 [][] [332] [333] [334] Overfull \hbox (684.99643pt too wide) in paragraph at lines 27266--27325 @texttt Time,depth,nVertInterfaces,nVertLevels,nVertLevelsP1,nZBGCTracers,nBio LayersP1,nAlgaeIceLayers,nDisIronIceLayers,nIceLayers,maxEdges,MaxEdges2,nCateg ories,R3,ONE,TWO,FOUR,nEdges,nCells[]@textrm , [335] [336] Overfull \hbox (15.27109pt too wide) in paragraph at lines 27381--27381 [][] Overfull \hbox (15.27109pt too wide) in paragraph at lines 27404--27404 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27404--27404 [][] [337] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27482--27482 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 27529--27529 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27529--27529 [][] [338] [339] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27647--27647 []@texttt ncremap --sgs_frc=aice --sgs_msk=tmask --sgs_nrm=100 in.nc out.nc[] Overfull \hbox (55.5119pt too wide) in paragraph at lines 27663--27663 []@texttt ncremap --sgs_frc=sgs_landfrac_ne30.nc/landfrac -m map.nc in.nc out. nc[] [340] Overfull \hbox (21.01978pt too wide) in paragraph at lines 27785--27785 []@texttt ncremap --permute=Time,new_dim,nCells --map=map.nc in.nc out.nc[] Overfull \hbox (21.01978pt too wide) in paragraph at lines 27786--27786 []@texttt ncremap --permute=time,new_dim,lat,lon --map=map.nc in.nc out.nc[] [341] [342] [343] [344] [345] Overfull \hbox (61.26059pt too wide) in paragraph at lines 28252--28252 []@texttt ncremap -V var_rgr -d dst.nc -O ~/rgr in.nc # CF coordinates convent ion[] Overfull \hbox (101.5014pt too wide) in paragraph at lines 28254--28254 []@texttt ncremap -R "--rgr lat_nm=xq --rgr lon_nm=zj" -d dst.nc -O ~/rgr in.n c # Manual[] [346] [347] Overfull \hbox (21.01978pt too wide) in paragraph at lines 28417--28417 [][] Overfull \hbox (44.01453pt too wide) in paragraph at lines 28417--28417 [][] Overfull \hbox (44.01453pt too wide) in paragraph at lines 28417--28417 [][] [348] 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lines 64--64 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 72--72 [][] [379]) [380] (/builddir/build/BUILD/nco-5.1.4/doc/xmp/glb_avg.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 3--3 [][] [381] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14--14 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 19--19 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 26--26 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 29--29 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 31--31 [][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 40--40 [][][][][][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 43--43 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 45--45 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 49--49 [][][] [382]) [383] [384] (/builddir/build/BUILD/nco-5.1.4/doc/xmp/ann_avg.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16--16 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 19--19 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 21--21 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 28--28 [][] [385] Overfull \hbox (43.6852pt too wide) in paragraph at lines 42--42 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 47--47 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 48--48 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 63--63 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 71--71 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 85--85 [][] [386] Overfull \hbox (43.6852pt too wide) in paragraph at lines 93--93 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 97--97 [][] Overfull \hbox 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paragraph at lines 20--20 [][][][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21--21 [][][] [391] Overfull \hbox (72.42863pt too wide) in paragraph at lines 41--41 [][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 48--48 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 49--49 [][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 51--51 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 52--52 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 61--61 [][][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 63--63 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 68--68 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 71--71 [][] [392] Overfull \hbox (43.6852pt too wide) in paragraph at lines 76--76 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 77--77 [][] ) (/builddir/build/BUILD/nco-5.1.4/doc/xmp/mcc_grp.sh [393]) (/builddir/build/BUILD/nco-5.1.4/doc/xmp/rgr.sh [394] Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 6--6 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10--10 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 27--27 [][][][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 28--28 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 33--33 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 37--37 [][] ) (/builddir/build/BUILD/nco-5.1.4/doc/xmp/bi_interp.nco [395] Overfull \hbox (14.94176pt too wide) in paragraph at lines 34--34 [][][][] [396] Overfull \hbox (20.69044pt too wide) in paragraph at lines 61--61 [][][] ) (/builddir/build/BUILD/nco-5.1.4/doc/xmp/add_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 5--5 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 6--6 [][][][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 8--8 [][][] [397] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-5.1.4/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-5.1.4/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [398] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [399] [400] Overfull \hbox (60.93126pt too wide) in paragraph at lines 30857--30857 [][] Chapter 9 [401] [402] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31167--31167 [][] [403] [404] [405] [406] Overfull \hbox (37.93651pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 31167--31167 [][] [407] Overfull \hbox (693.28691pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31167--31167 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31167--31167 [][] [408] Chapter 10 [409] [410] (General Index) [411] [412] (./nco.cps [413] Overfull \hbox (37.49283pt too wide) in paragraph at lines 132--132 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],[\smallttsl subcycle\smalltt ],[\smallttsl interleave \smalltt ][] Overfull \hbox (32.76788pt too wide) in paragraph at lines 141--141 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],\smallttsl subcycle\smalltt ],[\smallttsl interleave\ smalltt ][] [414] [415] [416] [417] [418] Overfull \hbox (37.49283pt too wide) in paragraph at lines 727--727 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],[\smallttsl subcycle\smalltt ],[\smallttsl interleave \smalltt ][] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] Overfull \hbox (9.54256pt too wide) in paragraph at lines 2087--2087 \smalltt QuantizeBitGroomRoundNumberOfSignificantDigits[] [431] Overfull \hbox (23.71739pt too wide) in paragraph at lines 2093--2093 \smalltt QuantizeGranularBitRoundNumberOfSignificantDigits[] [432] [433] [434]) [435] [436] ) (see the transcript file for additional information) Output written on nco.pdf (444 pages, 2010733 bytes). Transcript written on nco.log. make: Leaving directory '/builddir/build/BUILD/nco-5.1.4/doc' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.uTlkZv + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64 ++ dirname /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd nco-5.1.4 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64 'INSTALL=/usr/bin/install -p' Making install in data make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/data' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin' /usr/bin/install -p ncclimo ncremap ncz2psx '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/data' Making install in src make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src' Making install in nco make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/lib64' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -p libnco.la '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/lib64' libtool: install: /usr/bin/install -p .libs/libnco-5.1.4.so /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/lib64/libnco-5.1.4.so libtool: install: (cd /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/lib64 && { ln -s -f libnco-5.1.4.so libnco.so || { rm -f libnco.so && ln -s libnco-5.1.4.so libnco.so; }; }) libtool: install: /usr/bin/install -p .libs/libnco.lai /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/lib64/libnco.la libtool: install: /usr/bin/install -p .libs/libnco.a /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/lib64/libnco.a libtool: install: chmod 644 /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/lib64/libnco.a libtool: install: ranlib /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/lib64/libnco.a libtool: warning: remember to run 'libtool --finish /usr/lib64' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -p ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin' libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncatted /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncatted libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncbo /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncbo libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncecat /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncecat libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncflint /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncflint libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncks /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncks libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncpdq /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncpdq libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncra /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncra libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncrename /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncrename libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncwa /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncwa /usr/bin/make install-exec-hook make[4]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco' cd /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) cd /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) cd /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) cd /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) make[4]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco' Making install in nco++ make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -p ncap2 '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin' libtool: warning: '../nco/libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncap2 /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncap2 make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src/nco++' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.4/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src' make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src' make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/src' Making install in man make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.4/man' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/man' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/man/man1' /usr/bin/install -p -m 644 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncpdq.1 ncra.1 ncrcat.1 ncremap.1 ncrename.1 ncwa.1 ncz2psx.1 '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/man/man1' make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/man' make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/man' Making install in doc make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.4/doc' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4/doc' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/info' /usr/bin/install -p -m 644 ./nco.info ./nco.info-1 ./nco.info-2 ./nco.info-3 ./nco.info-4 '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/info' install-info --info-dir='/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/info' '/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/info/nco.info' make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/doc' make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.4/doc' make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.4' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.4' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.4' make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.4' + rm /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/lib64/libnco.la + rm -f /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/info/dir + chrpath -d -k /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncap2 /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncatted /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncbo /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncclimo /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncdiff /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncea /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncecat /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/nces /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncflint /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncks /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncpdq /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncra /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncrcat /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncremap /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncrename /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncwa /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncz2psx `/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncclimo' probably isn't an ELF file. elf_open: Exec format error `/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncremap' probably isn't an ELF file. elf_open: Exec format error `/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncz2psx' probably isn't an ELF file. elf_open: Exec format error + : + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.1.4-1.fc38 --unique-debug-suffix -5.1.4-1.fc38.riscv64 --unique-debug-src-base nco-5.1.4-1.fc38.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/nco-5.1.4 extracting debug info from /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncbo extracting debug info from /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncap2 extracting debug info from /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncatted extracting debug info from /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncecat extracting debug info from /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncflint extracting debug info from /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncpdq extracting debug info from /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncks extracting debug info from /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncra extracting debug info from /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncrename extracting debug info from /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/bin/ncwa extracting debug info from /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/lib64/libnco-5.1.4.so original debug info size: 41024kB, size after compression: 39740kB /usr/bin/sepdebugcrcfix: Updated 11 CRC32s, 0 CRC32s did match. cpio: src/nco/ncap_yacc.h: Cannot stat: No such file or directory cpio: src/nco/ncap_yacc.y: Cannot stat: No such file or directory 12349 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/ncz2psx from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/bin/ncclimo from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/bin/ncremap from /usr/bin/env bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: nco-5.1.4-1.fc38.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.S3RoVz + umask 022 + cd /builddir/build/BUILD + cd nco-5.1.4 + DOCDIR=/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + cp -pr README README.md /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + cp -pr doc/rtfm.txt /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + cp -pr doc/nco.html /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + cp -pr doc/nco.pdf /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + cp -pr doc/nco.css /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + cp -pr doc/index.shtml /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + cp -pr doc/TODO /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + cp -pr doc/ChangeLog /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + cp -pr doc/nco.png /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + cp -pr doc/nco_news.shtml /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + cp -pr doc/nsf.png /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/doc/nco + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.q0aoYD + umask 022 + cd /builddir/build/BUILD + cd nco-5.1.4 + LICENSEDIR=/builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/licenses/nco + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/licenses/nco + cp -pr doc/LICENSE /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64/usr/share/licenses/nco + RPM_EC=0 ++ jobs -p + exit 0 Provides: libnco-5.1.4.so()(64bit) nco = 5.1.4-1.fc38 nco(riscv-64) = 5.1.4-1.fc38 Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: /usr/bin/bash ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libcurl.so.4()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.25()(64bit) libgslcblas.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libnco-5.1.4.so()(64bit) libnetcdf.so.19()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libudunits2.so.0()(64bit) rtld(GNU_HASH) Processing files: nco-devel-5.1.4-1.fc38.riscv64 Provides: nco-devel = 5.1.4-1.fc38 nco-devel(riscv-64) = 5.1.4-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-static-5.1.4-1.fc38.riscv64 Provides: nco-static = 5.1.4-1.fc38 nco-static(riscv-64) = 5.1.4-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-debugsource-5.1.4-1.fc38.riscv64 Provides: nco-debugsource = 5.1.4-1.fc38 nco-debugsource(riscv-64) = 5.1.4-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-debuginfo-5.1.4-1.fc38.riscv64 Provides: debuginfo(build-id) = 370e1eceb77ebb24e3b66b88b9754892b80c9cd3 debuginfo(build-id) = 4af48ea070bfa29a2c5d47f464bc55509604fe51 debuginfo(build-id) = 7f73e2ab43656c274a1a7a696ee4f0041c483aa0 debuginfo(build-id) = 8b48e5a3b82ade3382f5ae6b58845593924f53fd debuginfo(build-id) = 8c9a15c7436a440699cdbd65b49e6fa7d25e41dd debuginfo(build-id) = b4591961a7f6f8261670ccc595d6f1af01feaa4a debuginfo(build-id) = b9dc81407a6f4c67db3860ee46cfc1aa346d9345 debuginfo(build-id) = ccb9d8672198556dbbdb5361e8dc82d3b9ac0307 debuginfo(build-id) = ce68562953886a158cc813e123f6ca8703d0fe77 debuginfo(build-id) = f5226ba9f84b397975efdcb91d41541767a1493e debuginfo(build-id) = f6db1e92ce5389907d4599fea644afd4c22d6454 libnco-5.1.4.so-5.1.4-1.fc38.riscv64.debug()(64bit) nco-debuginfo = 5.1.4-1.fc38 nco-debuginfo(riscv-64) = 5.1.4-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: nco-debugsource(riscv-64) = 5.1.4-1.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64 Wrote: /builddir/build/RPMS/nco-debugsource-5.1.4-1.fc38.riscv64.rpm Wrote: /builddir/build/RPMS/nco-devel-5.1.4-1.fc38.riscv64.rpm Wrote: /builddir/build/RPMS/nco-5.1.4-1.fc38.riscv64.rpm Wrote: /builddir/build/RPMS/nco-static-5.1.4-1.fc38.riscv64.rpm Wrote: /builddir/build/RPMS/nco-debuginfo-5.1.4-1.fc38.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Ucs85K + umask 022 + cd /builddir/build/BUILD + cd nco-5.1.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/nco-5.1.4-1.fc38.riscv64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.18z1Py + umask 022 + cd /builddir/build/BUILD + rm -rf nco-5.1.4 nco-5.1.4.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Child return code was: 0