Mock Version: 1.4.21 Mock Version: 1.4.21 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/f33-build-228996-49927/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1590969600 Wrote: /builddir/build/SRPMS/nco-4.9.3-1.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/f33-build-228996-49927/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1590969600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Bst2AM + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf nco-4.9.3 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/nco-4.9.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd nco-4.9.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (nco-install_C_headers.patch):' Patch #0 (nco-install_C_headers.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .install_C_headers --fuzz=0 patching file src/nco/Makefile.in Hunk #1 succeeded at 776 (offset 9 lines). + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.DHSvmM + umask 022 + cd /builddir/build/BUILD + cd nco-4.9.3 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./autobld/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./autobld/config.sub ++ basename ./autobld/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./autobld/config.sub '/usr/lib/rpm/redhat/config.sub' -> './autobld/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./autobld/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./autobld/config.guess ++ basename ./autobld/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./autobld/config.guess '/usr/lib/rpm/redhat/config.guess' -> './autobld/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./autobld/ltmain.sh + ./configure --build=riscv64-redhat-linux-gnu --host=riscv64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info HAVE_ANTLR=yes --disable-dependency-tracking --includedir=/usr/include/nco checking build system type... riscv64-redhat-linux-gnu checking host system type... riscv64-redhat-linux-gnu checking target system type... riscv64-redhat-linux-gnu ./configure: line 2995: git: command not found checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for riscv64-redhat-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for riscv64-redhat-linux-gnu-g++... no checking for riscv64-redhat-linux-gnu-c++... no checking for riscv64-redhat-linux-gnu-gpp... no checking for riscv64-redhat-linux-gnu-aCC... no checking for riscv64-redhat-linux-gnu-CC... no checking for riscv64-redhat-linux-gnu-cxx... no checking for riscv64-redhat-linux-gnu-cc++... no checking for riscv64-redhat-linux-gnu-cl.exe... no checking for riscv64-redhat-linux-gnu-FCC... no checking for riscv64-redhat-linux-gnu-KCC... no checking for riscv64-redhat-linux-gnu-RCC... no checking for riscv64-redhat-linux-gnu-xlC_r... no checking for riscv64-redhat-linux-gnu-xlC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for flex... flex checking lex output file root... lex.yy checking lex library... none needed checking whether yytext is a pointer... no checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert riscv64-redhat-linux-gnu file names to riscv64-redhat-linux-gnu format... func_convert_file_noop checking how to convert riscv64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for riscv64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for riscv64-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for riscv64-redhat-linux-gnu-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for riscv64-redhat-linux-gnu-strip... no checking for strip... strip checking for riscv64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for riscv64-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for working strtod... yes checking for canonicalize_file_name... yes checking for floor... no checking for gethostname... yes checking for getpagesize... yes checking for getrusage... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkstemp... yes checking for pow... no checking for readlink... yes checking for realpath... yes checking for regcomp... yes checking for setlocale... yes checking for sqrt... no checking for strchr... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for ANSI C header files... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking cstdlib usability... yes checking cstdlib presence... yes checking for cstdlib... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for ptrdiff_t... yes checking size of int*... 8 checking whether C++ compiler implements namespaces... yes checking whether C++ compiler has working valarray... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no ################################# # Test for netCDF # ################################ checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for nc_open in -lnetcdf... yes ################################# # Test for netCDF4 support # ################################# checking whether NC_CHUNKED is declared... yes configure: netcdf.h contains netCDF4 definitions checking for nc_def_var_chunking in -lnetcdf... yes configure: Good news: Simple program compiles and links to netCDF4 library checking for netcdf_mem.h... yes checking for gcc option to support OpenMP... -fopenmp configure: OpenMP support enabled Beginning generic tests for DAP support Testing for DAP-netCDF support (is DAP in libnetcdf.a?)... checking for daperror in -lnetcdf... yes configure: DAP support enabled checking for getopt_long... yes checking for _g95_ac_array in -lf95... no checking for sin in -lm... yes checking for sinf in -lsunmath... no checking for gettext in -lintl... no checking for res_init in -lresolv... no checking for main in -lsocket... no checking for main in -lthread... no checking for nco_open in -lnco... no checking for nc_inq_format... yes checking for nc_inq_path... yes checking for nc_set_log_level... yes checking for nc_rename_grp... yes checking for getopt... yes checking for getopt_long... (cached) yes checking for atan2... yes checking for acosf... yes checking for asinf... yes checking for atanf... yes checking for atan2f... yes checking for cosf... yes checking for expf... yes checking for fabsf... yes checking for fmodf... yes checking for log10f... yes checking for logf... yes checking for powf... yes checking for sinf... yes checking for sqrtf... yes checking for tanf... yes checking for erff... yes checking for erfcf... yes checking for gammaf... yes checking for acoshf... yes checking for asinhf... yes checking for atanhf... yes checking for coshf... yes checking for sinhf... yes checking for tanhf... yes checking for ceilf... yes checking for floorf... yes checking for nearbyint... yes checking for rint... yes checking for round... yes checking for trunc... yes checking for nearbyintf... yes checking for rintf... yes checking for roundf... yes checking for truncf... yes checking for getopt_long... (cached) yes checking for strdup... yes checking for strcasecmp... yes checking for strsep... yes checking for strcasestr... yes checking for htonl... yes checking for htons... yes checking for ntohl... yes checking for ntohs... yes checking for __builtin_bswap16... no checking for __builtin_bswap32... no checking for __builtin_bswap64... no ########################################################## # Sorting out MacOSX build parameters # ########################################################## ################################# # Testing for ANTLR support # ################################# checking for runantlr... yes configure: antlr library was found checking antlr/CommonToken.hpp usability... yes checking antlr/CommonToken.hpp presence... yes checking for antlr/CommonToken.hpp... yes INFO: ANTLR development support found---will build nco++ directory and ncap2 ################################################## # Testing for ESMF support (only for developers) # ################################################## ######################################## # Testing for GSL support # ######################################## configure: These GSL library and header tests must succeed for GSL support: checking for gsl_sf_gamma_inc in -lgsl... yes checking for /usr/include/gsl/gsl_sf_gamma.h... yes configure: GSL support enabled checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking for sys/types.h... (cached) yes checking for regexec... yes checking for regcomp... (cached) yes checking for regfree... yes ######################################## # Testing for UDUNITS support # ######################################## WARNING: Requested both UDUnits and UDUnits2 support---overriding UDUnits Will attempt to build NCO with UDUnits support from libudunits2, not from libudunits checking for XML_ParserCreate in -lexpat... no checking for /usr/include/udunits2/udunits2.h... yes checking for /usr/include/udunits2.h... no checking for /usr/lib/x86_64-linux-gnu/libudunits2.a... no checking for /usr/lib/i386-linux-gnu/libudunits2.a... no checking for /opt/local/include/udunits2/udunits2.h... no checking for /opt/local/lib/libudunits2.a... no checking for /usr/share/udunits/udunits2.xml... yes configure: NB: Following tests of UDUnits2 library and header must succeed for UDUnits2 support: checking for ut_read_xml in -ludunits2... yes checking udunits2.h usability... yes checking udunits2.h presence... yes checking for udunits2.h... yes configure: UDUnits2 support enabled checking for ncgen... /usr/bin/ncgen configure: Creating sample netCDF data files for self-tests ############################### # Require Shared Libs? # ############################### checking for makeinfo... yes MAKEINFO_VERSION=6.7 configure: Documentation support enabled checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/nco/Makefile config.status: creating man/Makefile config.status: creating src/nco_c++/Makefile config.status: creating src/nco++/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Parameters: AR_FLAGS............. cru CC................... gcc CFLAGS............... -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE CPP.................. gcc -E CPPFLAGS............. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 CXX.................. g++ CXXFLAGS............. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection ENABLE_DAP........... yes ENABLE_ESMF...........no ENABLE_GSL........... yes ENABLE_LOGGING....... ENABLE_NETCDF4....... yes ENABLE_OPENMP........ yes ENABLE_UDUNITS....... no ENABLE_UDUNITS2...... yes GSL_ROOT............. /usr HAVE_ANTLR........... yes HAVE_MAKEINFO........ yes HAVE_NETCDF4_H....... yes HOST................. HOSTNAME............. LDFLAGS.............. -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld LIBS................. -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 NETCDF_ROOT.......... /usr OPENMP_CFLAGS........ -fopenmp host................. riscv64-redhat-linux-gnu install prefix ...... /usr ******************************************************************* Configuration complete. You are now ready to run 'make'. Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). If the build fails, please examine the file 'configure.eg' in the top-level NCO directory. It contains examples known to build NCO for various platforms and compilers. ******************************************************************* + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/make all-recursive Making all in data make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/data' /builddir/build/BUILD/nco-4.9.3/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc make[2]: /builddir/build/BUILD/nco-4.9.3/src/nco/ncks: No such file or directory make[2]: [Makefile:581: in_4c.nc] Error 127 (ignored) make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/data' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/data' /usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/data' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/data' /usr/bin/ncgen -o big.nc big.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/data' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/data' /usr/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/data' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/data' /usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/data' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/data' /usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/data' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/data' /usr/bin/ncgen -k netCDF-4 -o split.nc split.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/data' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/data' /usr/bin/ncgen -k netCDF-4 -o ref_utf8.nc ref_utf8.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/data' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/data' /usr/bin/ncgen -k netCDF-4 -o in_4.nc in.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/data' Making all in src Making all in nco make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncatted.o ncatted.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncatted.c:103: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_bnr.lo nco_bnr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -o nco_bnr.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_bnr.h:17, from nco_bnr.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_aux.lo nco_aux.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_aux.c -fPIC -DPIC -o .libs/nco_aux.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_aux.c -o nco_aux.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_aux.h:17, from nco_aux.c:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_dmn.lo nco_cnf_dmn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_dmn.c -fPIC -DPIC -o .libs/nco_cnf_dmn.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_dmn.c -o nco_cnf_dmn.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_cnf_dmn.h:17, from nco_cnf_dmn.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cln_utl.lo nco_cln_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cln_utl.c -fPIC -DPIC -o .libs/nco_cln_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cln_utl.c -o nco_cln_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/ctype.h:25, from nco_cln_utl.h:21, from nco_cln_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_cln_utl.c: In function 'nco_cln_var_prs': nco_cln_utl.c:1188:27: warning: 'mss_val_flt' may be used uninitialized in this function [-Wmaybe-uninitialized] 1188 | if(var->has_mss_val && var->val.fp[idx]==mss_val_flt ){ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_cln_utl.c:1164:27: warning: 'mss_val_dbl' may be used uninitialized in this function [-Wmaybe-uninitialized] 1164 | if(var->has_mss_val && var->val.dp[idx]==mss_val_dbl) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_arm.lo nco_cnv_arm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_arm.c -o nco_cnv_arm.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_cnv_arm.h:17, from nco_cnv_arm.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_att_utl.lo nco_att_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_att_utl.c -fPIC -DPIC -o .libs/nco_att_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_att_utl.c -o nco_att_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_att_utl.h:21, from nco_att_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_typ.lo nco_cnf_typ.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_typ.c -fPIC -DPIC -o .libs/nco_cnf_typ.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_typ.c -o nco_cnf_typ.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_cnf_typ.h:17, from nco_cnf_typ.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_csm.lo nco_cnv_csm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_csm.c -fPIC -DPIC -o .libs/nco_cnv_csm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_csm.c -o nco_cnv_csm.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_cnv_csm.h:17, from nco_cnv_csm.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_crt.lo nco_crt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_crt.c -fPIC -DPIC -o .libs/nco_crt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_crt.c -o nco_crt.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from nco_crt.h:55, from nco_crt.c:49: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnk.lo nco_cnk.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnk.c -o nco_cnk.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_cnk.h:17, from nco_cnk.c:45: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dbg.lo nco_dbg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dbg.c -fPIC -DPIC -o .libs/nco_dbg.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dbg.c -o nco_dbg.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_dbg.h:17, from nco_dbg.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dmn_utl.lo nco_dmn_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dmn_utl.c -fPIC -DPIC -o .libs/nco_dmn_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dmn_utl.c -o nco_dmn_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_dmn_utl.h:21, from nco_dmn_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ctl.lo nco_ctl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ctl.c -o nco_ctl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_ctl.h:21, from nco_ctl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_fl_utl.lo nco_fl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_fl_utl.c -fPIC -DPIC -o .libs/nco_fl_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_fl_utl.c -o nco_fl_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/errno.h:25, from nco_fl_utl.h:21, from nco_fl_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_fl_utl.c: In function 'nco_fl_nm_prs': nco_fl_utl.c:1482:38: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 1482 | (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); | ^~ nco_fl_utl.c:1482:34: note: directive argument in the range [-2147483648, 2147483645] 1482 | (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); | ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:872, from nco_fl_utl.h:23, from nco_fl_utl.c:10: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_trv.lo nco_grp_trv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_trv.c -fPIC -DPIC -o .libs/nco_grp_trv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_trv.c -o nco_grp_trv.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_grp_trv.h:21, from nco_grp_trv.c:14: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_kd.lo nco_kd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_kd.c -fPIC -DPIC -o .libs/nco_kd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_kd.c -o nco_kd.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_kd.h:58, from nco_kd.c:72: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_kd.c: In function 'kd_nearest_intersect_wrp': nco_kd.c:2630:7: warning: variable 'ret_cnt1' set but not used [-Wunused-but-set-variable] 2630 | int ret_cnt1=0; | ^~~~~~~~ nco_kd.c:2629:7: warning: variable 'ret_cnt' set but not used [-Wunused-but-set-variable] 2629 | int ret_cnt=0; | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lst_utl.lo nco_lst_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lst_utl.c -fPIC -DPIC -o .libs/nco_lst_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lst_utl.c -o nco_lst_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_lst_utl.h:21, from nco_lst_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_lst_utl.c: In function 'nco_fmt_sng_printf_subst': nco_lst_utl.c:38:89: warning: unknown escape sequence: '\.' 38 | const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */ | ^ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lmt.lo nco_lmt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lmt.c -fPIC -DPIC -o .libs/nco_lmt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lmt.c -o nco_lmt.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_lmt.h:21, from nco_lmt.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_md5.lo nco_md5.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_md5.c -o nco_md5.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_md5.h:22, from nco_md5.c:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mmr.lo nco_mmr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mmr.c -o nco_mmr.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/errno.h:25, from nco_mmr.h:21, from nco_mmr.c:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mss_val.lo nco_mss_val.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mss_val.c -o nco_mss_val.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_mss_val.h:21, from nco_mss_val.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_map.lo nco_map.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_map.c -fPIC -DPIC -o .libs/nco_map.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_map.c -o nco_map.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/riscv64-redhat-linux/10/include/limits.h:195, from /usr/lib/gcc/riscv64-redhat-linux/10/include/syslimits.h:7, from /usr/lib/gcc/riscv64-redhat-linux/10/include/limits.h:34, from nco_map.h:17, from nco_map.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_map.c: In function 'nco_map_mk': nco_map.c:300:12: warning: variable 'flg_grd_out_rct' set but not used [-Wunused-but-set-variable] 300 | nco_bool flg_grd_out_rct=False; /* [flg] Rectangular coordinates */ | ^~~~~~~~~~~~~~~ nco_map.c:298:12: warning: variable 'flg_grd_in_rct' set but not used [-Wunused-but-set-variable] 298 | nco_bool flg_grd_in_rct=False; /* [flg] Rectangular coordinates */ | ^~~~~~~~~~~~~~ nco_map.c:229:7: warning: variable 'bnd_nbr_out' set but not used [-Wunused-but-set-variable] 229 | int bnd_nbr_out; /* [nbr] Number of vertices for destination grid coordinates */ | ^~~~~~~~~~~ nco_map.c:211:8: warning: variable 'col_nbr_in' set but not used [-Wunused-but-set-variable] 211 | long col_nbr_in; /* [idx] Number of columns in source grid */ | ^~~~~~~~~~ nco_map.c:210:7: warning: variable 'bnd_nbr_in' set but not used [-Wunused-but-set-variable] 210 | int bnd_nbr_in; /* [nbr] Number of vertices for source grid coordinates */ | ^~~~~~~~~~ nco_map.c:29:16: warning: unused variable 'eps_rlt' [-Wunused-variable] 29 | const double eps_rlt=1.0e-14; /* [frc] Round-off error tolerance */ | ^~~~~~~ nco_map.c:28:16: warning: unused variable 'dgr2rdn' [-Wunused-variable] 28 | const double dgr2rdn=M_PI/180.0; | ^~~~~~~ nco_map.c: In function 'nco_msh_wrt': nco_map.c:1241:8: warning: unused variable 'msk_nm' [-Wunused-variable] 1241 | char msk_nm[]="grid_imask"; | ^~~~~~ nco_map.c:1239:8: warning: unused variable 'grd_rnk_nm' [-Wunused-variable] 1239 | char grd_rnk_nm[]="grid_rank"; | ^~~~~~~~~~ nco_map.c:1238:8: warning: unused variable 'grd_ctr_lon_nm' [-Wunused-variable] 1238 | char grd_ctr_lon_nm[]="grid_center_lon"; | ^~~~~~~~~~~~~~ nco_map.c:1237:8: warning: unused variable 'grd_ctr_lat_nm' [-Wunused-variable] 1237 | char grd_ctr_lat_nm[]="grid_center_lat"; | ^~~~~~~~~~~~~~ nco_map.c:1222:11: warning: variable 'grd_ctr_lon' set but not used [-Wunused-but-set-variable] 1222 | double *grd_ctr_lon=NULL_CEWI; | ^~~~~~~~~~~ nco_map.c:1205:7: warning: variable 'rcd' set but not used [-Wunused-but-set-variable] 1205 | int rcd; | ^~~ nco_map.c:1201:14: warning: unused variable 'fnc_nm' [-Wunused-variable] 1201 | const char fnc_nm[]="nco_grd_mk()"; /* [sng] Function name */ | ^~~~~~ nco_map.c: In function 'nco_msh_poly_lst_wrt': nco_map.c:1484:7: warning: variable 'rcd' set but not used [-Wunused-but-set-variable] 1484 | int rcd; | ^~~ nco_map.c:1480:14: warning: unused variable 'fnc_nm' [-Wunused-variable] 1480 | const char fnc_nm[]="nco_grd_mk()"; /* [sng] Function name */ | ^~~~~~ nco_map.c: In function 'nco_map_frac_a_clc': nco_map.c:1984:8: warning: unused variable 'fnc_nm' [-Wunused-variable] 1984 | char fnc_nm[]="nco_map_frac_a_clc()"; | ^~~~~~ nco_map.c: In function 'nco_map_chk': nco_map.c:2073:13: warning: unused variable 'var_lst' [-Wunused-variable] 2073 | var_sct **var_lst=NULL_CEWI; | ^~~~~~~ nco_map.c:2071:10: warning: variable 'tally' set but not used [-Wunused-but-set-variable] 2071 | size_t tally; | ^~~~~ nco_map.c:2053:7: warning: variable 'rcd' set but not used [-Wunused-but-set-variable] 2053 | int rcd; | ^~~ nco_map.c: In function 'nco_map_mk': nco_map.c:401:8: warning: 'lon_nbr_in' may be used uninitialized in this function [-Wmaybe-uninitialized] 401 | if(idx%lon_nbr_in == 0) idx_tst=idx; | ~~~^~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_msa.lo nco_msa.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_msa.c -o nco_msa.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_msa.h:21, from nco_msa.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mta.lo nco_mta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mta.c -fPIC -DPIC -o .libs/nco_mta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mta.c -o nco_mta.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_mta.h:21, from nco_mta.c:12: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_omp.lo nco_omp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_omp.c -o nco_omp.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_omp.h:17, from nco_omp.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_pck.lo nco_pck.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_pck.c -o nco_pck.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_pck.h:17, from nco_pck.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ply.lo nco_ply.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ply.c -fPIC -DPIC -o .libs/nco_ply.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ply.c -o nco_ply.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_ply.h:16, from nco_ply.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_netcdf.lo nco_netcdf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_netcdf.c -o nco_netcdf.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/ctype.h:25, from nco_netcdf.h:43, from nco_netcdf.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ply_lst.lo nco_ply_lst.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ply_lst.c -fPIC -DPIC -o .libs/nco_ply_lst.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ply_lst.c -o nco_ply_lst.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from nco_ply_lst.h:16, from nco_ply_lst.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_ply_lst.c: In function 'nco_poly_lst_mk_vrl': nco_ply_lst.c:589:10: warning: variable 'size' set but not used [-Wunused-but-set-variable] 589 | kd_box size; | ^~~~ nco_ply_lst.c: In function 'nco_poly_lst_mk_vrl_sph': nco_ply_lst.c:700:7: warning: unused variable 'max_nbr_vrl' [-Wunused-variable] 700 | int max_nbr_vrl=(NCO_VRL_BLOCKSIZE); | ^~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rec_var.lo nco_rec_var.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rec_var.c -o nco_rec_var.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_rec_var.h:17, from nco_rec_var.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ppc.lo nco_ppc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ppc.c -o nco_ppc.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/ctype.h:25, from nco_ppc.h:17, from nco_ppc.c:13: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_ppc.c: In function 'nco_ppc_bitmask': nco_ppc.c:759:47: warning: 'u8_xpn' may be used uninitialized in this function [-Wmaybe-uninitialized] 759 | if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stdout,"%s: DEBUG nco_ppc_bitmask() reports val = %g, u8_xpn_nbr = %hhu\n",nco_prg_nm_get(),op1.fp[idx],u8_xpn); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_ppc.c:776:137: warning: 'idx' may be used uninitialized in this function [-Wmaybe-uninitialized] 776 | if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stdout,"%s: DEBUG nco_ppc_bitmask() reports val = %g\n",nco_prg_nm_get(),op1.fp[idx]); | ^ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rth_flt.lo nco_rth_flt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_flt.c -fPIC -DPIC -o .libs/nco_rth_flt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_flt.c -o nco_rth_flt.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_rth_flt.h:21, from nco_rth_flt.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_utl.lo nco_grp_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_utl.c -fPIC -DPIC -o .libs/nco_grp_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_utl.c -o nco_grp_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/assert.h:35, from nco_grp_utl.h:21, from nco_grp_utl.c:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rth_utl.lo nco_rth_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_utl.c -fPIC -DPIC -o .libs/nco_rth_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_utl.c -o nco_rth_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_rth_utl.h:17, from nco_rth_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scl_utl.lo nco_scl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scl_utl.c -fPIC -DPIC -o .libs/nco_scl_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scl_utl.c -o nco_scl_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_scl_utl.h:21, from nco_scl_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scm.lo nco_scm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scm.c -fPIC -DPIC -o .libs/nco_scm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scm.c -o nco_scm.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_scm.h:21, from nco_scm.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/string.h:504, from nco_scm.h:22, from nco_scm.c:10: In function 'strncpy', inlined from 'cvs_vrs_prs' at nco_scm.c:83:14: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' offset 7 is out of the bounds [0, 7] of object 'cvs_Name' with type 'char[7]' [-Warray-bounds] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_scm.c: In function 'cvs_vrs_prs': nco_scm.c:34:8: note: 'cvs_Name' declared here 34 | char cvs_Name[]="$Name$"; | ^~~~~~~~ In file included from /usr/include/string.h:504, from nco_scm.h:22, from nco_scm.c:10: In function 'strncpy', inlined from 'nco_lbr_vrs_prn' at nco_scm.c:185:3: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_scm.c: In function 'nco_lbr_vrs_prn': nco_scm.c:180:29: note: length computed here 180 | lbr_vrs_sng_lng=(size_t)strlen(lbr_sng); | ^~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sld.lo nco_sld.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sld.c -fPIC -DPIC -o .libs/nco_sld.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sld.c -o nco_sld.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_sld.h:17, from nco_sld.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sng_utl.lo nco_sng_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sng_utl.c -o nco_sng_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_sng_utl.h:21, from nco_sng_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_sng_utl.c: In function 'nm2sng_cdl': nco_sng_utl.c:270:34: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] 270 | snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); | ^ In file included from /usr/include/stdio.h:872, from nco_sng_utl.h:21, from nco_sng_utl.c:10: /usr/include/bits/stdio2.h:70:10: note: '__builtin___snprintf_chk' output 5 bytes into a destination of size 4 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_sng_utl.c: In function 'nm2sng_fl': nco_sng_utl.c:425:34: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] 425 | snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); | ^ In file included from /usr/include/stdio.h:872, from nco_sng_utl.h:21, from nco_sng_utl.c:10: /usr/include/bits/stdio2.h:70:10: note: '__builtin___snprintf_chk' output 5 bytes into a destination of size 4 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_srm.lo nco_srm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_srm.c -o nco_srm.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_srm.h:21, from nco_srm.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_prn.lo nco_prn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_prn.c -o nco_prn.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_prn.h:21, from nco_prn.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_prn.c: In function 'nco_prn_var_val_cmt': nco_prn.c:1135:3: warning: 'val_sz_byt' may be used uninitialized in this function [-Wmaybe-uninitialized] 1135 | for(lmn=0;lmnnm,sz_sng,var_sz,vln_lng_avg,(unsigned long)nco_typ_lng_udt(nc_id,bs_typ),(unsigned long)ram_sz_crr); else (void)fprintf(fp_out,"%*s%s size (RAM) = %s = %li*%lu = %lu bytes\n",prn_ndn,spc_sng,var_trv->nm,sz_sng,var_sz,(unsigned long)nco_typ_lng_udt(nc_id,bs_typ),(unsigned long)ram_sz_crr); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_prn.c: In function 'nco_prn_att': nco_prn.c:719:8: warning: 'mbr_val' may be used uninitialized in this function [-Wmaybe-uninitialized] 719 | rcd=nco_inq_enum_ident(grp_id,att[idx].type,mbr_val,mbr_nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_prn.c: In function 'nco_prn_var_val_trv': nco_prn.c:2475:67: warning: 'vln_lngm1' may be used uninitialized in this function [-Wmaybe-uninitialized] 2475 | case NC_UINT64: for(vln_idx=0;vln_idxtype,mbr_val,mbr_nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sph.lo nco_sph.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sph.c -fPIC -DPIC -o .libs/nco_sph.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sph.c -o nco_sph.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from nco_sph.h:55, from nco_sph.c:49: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_sph.c: In function 'nco_sph_cross_sub': nco_sph.c:122:14: warning: unused variable 'fnc_nm' [-Wunused-variable] 122 | const char fnc_nm[]="nco_sph_cross()"; | ^~~~~~ nco_sph.c: In function 'nco_sph_seg_int_old': nco_sph.c:591:10: warning: variable 'darc' set but not used [-Wunused-but-set-variable] 591 | double darc; | ^~~~ nco_sph.c:583:10: warning: variable 'nx_ci' set but not used [-Wunused-but-set-variable] 583 | double nx_ci; | ^~~~~ nco_sph.c:580:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable] 580 | double nx2; | ^~~ nco_sph.c: In function 'nco_sph_metric_int': nco_sph.c:814:12: warning: unused variable 'bIGood' [-Wunused-variable] 814 | nco_bool bIGood=False; | ^~~~~~ nco_sph.c: In function 'nco_sph_seg_int': nco_sph.c:975:11: warning: unused variable 'dswp' [-Wunused-variable] 975 | double *dswp; | ^~~~ nco_sph.c: In function 'nco_sph_seg_smc': nco_sph.c:1197:10: warning: variable 'nd1' set but not used [-Wunused-but-set-variable] 1197 | double nd1; | ^~~ nco_sph.c: In function 'nco_sph_seg_int_1': nco_sph.c:1345:12: warning: unused variable 'DEBUG_LCL' [-Wunused-variable] 1345 | nco_bool DEBUG_LCL=False; | ^~~~~~~~~ In file included from nco_sph.h:71, from nco_sph.c:49: nco_sph.c: In function 'nco_sph_seg_parallel': nco.h:83:16: warning: statement with no effect [-Wunused-value] 83 | # define False 0 | ^ nco_sph.c:1553:5: note: in expansion of macro 'False' 1553 | False; | ^~~~~ nco_sph.c:1522:10: warning: variable 'nx3' set but not used [-Wunused-but-set-variable] 1522 | double nx3; | ^~~ nco_sph.c:1521:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable] 1521 | double nx2; | ^~~ nco_sph.c:1520:10: warning: variable 'nx1' set but not used [-Wunused-but-set-variable] 1520 | double nx1; | ^~~ nco_sph.c: In function 'nco_sph_intersect_pre': nco_sph.c:1692:7: warning: unused variable 'numVertex' [-Wunused-variable] 1692 | int numVertex = 0; | ^~~~~~~~~ nco_sph.c: In function 'nco_sph_seg_vrt_int': nco_sph.c:1932:10: warning: variable 'nx_av' set but not used [-Wunused-but-set-variable] 1932 | double nx_av; | ^~~~~ nco_sph.c:1931:10: warning: variable 'nx_ab' set but not used [-Wunused-but-set-variable] 1931 | double nx_ab; | ^~~~~ nco_sph.c: In function 'nco_sph_sxcross': nco_sph.c:2224:8: warning: unused variable 'fnc_nm' [-Wunused-variable] 2224 | char fnc_nm[]="nco_sph_sxcross"; | ^~~~~~ nco_sph.c: In function 'nco_sph_is_convex': nco_sph.c:2573:8: warning: unused variable 'theta' [-Wunused-variable] 2573 | double theta=0.0; | ^~~~~ nco_sph.c:2570:8: warning: unused variable 'n2' [-Wunused-variable] 2570 | double n2; | ^~ nco_sph.c:2569:8: warning: variable 'n1' set but not used [-Wunused-but-set-variable] 2569 | double n1; | ^~ nco_sph.c:2559:10: warning: unused variable 'flg_sx' [-Wunused-variable] 2559 | nco_bool flg_sx=0; | ^~~~~~ nco_sph.c: In function 'nco_sph_mk_control': nco_sph.c:2613:8: warning: unused variable 'iret' [-Wunused-variable] 2613 | int iret=NCO_ERR; | ^~~~ nco_sph.c: In function 'nco_sph_inside_mk': nco_sph.c:2921:12: warning: unused variable 'bDeg' [-Wunused-variable] 2921 | nco_bool bDeg=False; | ^~~~ nco_sph.c: In function 'nco_geo_lonlat_2_sph': nco_sph.c:3112:11: warning: unused variable 'sigma' [-Wunused-variable] 3112 | double sigma=1.0e-14; | ^~~~~ nco_sph.c:3111:13: warning: unused variable 'bTidy' [-Wunused-variable] 3111 | nco_bool bTidy=False; | ^~~~~ nco_sph.c:3110:9: warning: unused variable 'fnc_nm' [-Wunused-variable] 3110 | char fnc_nm[]="nco_geo_lonlat_2_sph"; | ^~~~~~ nco_sph.c: In function 'nco_sph_area_karney': nco_sph.c:3204:7: warning: variable 'idx_pre' set but not used [-Wunused-but-set-variable] 3204 | int idx_pre; | ^~~~~~~ nco_sph.c: In function 'nco_rll_intersect': nco_sph.c:3475:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable] 3475 | double nx2; | ^~~ nco_sph.c:3474:10: warning: variable 'nx1' set but not used [-Wunused-but-set-variable] 3474 | double nx1; | ^~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_avg.lo nco_var_avg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_avg.c -o nco_var_avg.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_var_avg.h:17, from nco_var_avg.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_lst.lo nco_var_lst.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_lst.c -o nco_var_lst.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/assert.h:35, from nco_var_lst.h:21, from nco_var_lst.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_scv.lo nco_var_scv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_scv.c -o nco_var_scv.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_var_scv.h:17, from nco_var_scv.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncbo.o ncbo.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncbo.c:57: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_utl.lo nco_var_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_utl.c -o nco_var_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/assert.h:35, from nco_var_utl.h:21, from nco_var_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncecat.o ncecat.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncecat.c:45: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/string.h:504, from ncecat.c:48: In function 'strncpy', inlined from 'main' at ncecat.c:824:17: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncecat.c: In function 'main': ncecat.c:824:45: note: length computed here 824 | gpe_arg=strncpy(gpe_arg,stb_srt_psn,strlen(stb_srt_psn)-sfx_lng); | ^~~~~~~~~~~~~~~~~~~ ncecat.c:782:30: warning: '%02d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=] 782 | sprintf(grp_out_sfx,"%02d",fl_idx); | ^~~~ ncecat.c:782:29: note: directive argument in the range [0, 2147483647] 782 | sprintf(grp_out_sfx,"%02d",fl_idx); | ^~~~~~ In file included from /usr/include/stdio.h:872, from ncecat.c:46: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 3 and 11 bytes into a destination of size 3 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncecat.c:215:10: warning: 'grp_out_lng' may be used uninitialized in this function [-Wmaybe-uninitialized] 215 | size_t grp_out_lng; /* [nbr] Length of original, canonicalized GPE specification filename component */ | ^~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncflint.o ncflint.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncflint.c:42: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_rth.lo nco_var_rth.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_rth.c -o nco_var_rth.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_var_rth.h:21, from nco_var_rth.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncks.o ncks.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/assert.h:35, from ncks.c:70: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncks.c: In function 'main': ncks.c:190:8: warning: 'in_id_arr' may be used uninitialized in this function [-Wmaybe-uninitialized] 190 | int *in_id_arr; /* [id] netCDF file IDs used by OpenMP code */ | ^~~~~~~~~ ncks.c:1481:51: warning: 'fl_lst_in' may be used uninitialized in this function [-Wmaybe-uninitialized] 1481 | if(fl_lst_in && fl_lst_abb == NULL) fl_lst_in=nco_sng_lst_free(fl_lst_in,fl_nbr); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncpdq.o ncpdq.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncpdq.c:47: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncrename.o ncrename.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncrename.c:41: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncwa.o ncwa.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncwa.c:43: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_utl.o ncap_utl.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/assert.h:35, from ncap_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' test -f ncap_lex.c || /bin/sh ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncra.o ncra.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncra.c:61: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_lex.o ncap_lex.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from ncap_lex.c:277: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncap_lex.c:2978:16: warning: 'input' defined but not used [-Wunused-function] 2978 | #else | ^ ncap_lex.c: In function 'nco_yylex': ncap_lex.l:611:34: warning: '%s' directive writing up to 255 bytes into a region of size 160 [-Wformat-overflow=] 611 | (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:872, from ncap_lex.c:277: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 98 or more bytes (assuming 608) into a destination of size 200 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncap_lex.l:587:29: warning: '%s' directive writing up to 255 bytes into a region of size 160 [-Wformat-overflow=] 587 | (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:872, from ncap_lex.c:277: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 98 or more bytes (assuming 608) into a destination of size 200 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncap_lex.l:634:34: warning: '%s' directive writing up to 255 bytes into a region of size 164 [-Wformat-overflow=] 634 | (void)sprintf(ncap_err_sng,"#Warning: unable to locate variable %s. So cannot create attribute %s",var_nm,yytext); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:872, from ncap_lex.c:277: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 66 or more bytes (assuming 321) into a destination of size 200 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rgr.lo nco_rgr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rgr.c -fPIC -DPIC -o .libs/nco_rgr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rgr.c -o nco_rgr.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/riscv64-redhat-linux/10/include/limits.h:195, from /usr/lib/gcc/riscv64-redhat-linux/10/include/syslimits.h:7, from /usr/lib/gcc/riscv64-redhat-linux/10/include/limits.h:34, from nco_rgr.h:17, from nco_rgr.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_rgr.c: In function 'nco_ntp_vrt._omp_fn.0': nco_rgr.c:2086:7: warning: 'FIRST_WARNING_LHS' may be used uninitialized in this function [-Wmaybe-uninitialized] 2086 | if(FIRST_WARNING_LHS) (void)fprintf(fp_stdout,"%s: INFO %s geopotential height extrapolated upward towards space using hypsometric equation with constant global mean virtual temperature = %g for variable %s\n",nco_prg_nm_get(),fnc_nm,tpt_vrt_avg,var_nm); | ^ nco_rgr.c:1989:13: note: 'FIRST_WARNING_LHS' was declared here 1989 | nco_bool FIRST_WARNING_LHS; /* [flg] First warning for LHS extrapolation */ | ^~~~~~~~~~~~~~~~~ nco_rgr.c:2142:7: warning: 'FIRST_WARNING_RHS' may be used uninitialized in this function [-Wmaybe-uninitialized] 2142 | if(FIRST_WARNING_RHS) (void)fprintf(fp_stdout,"%s: INFO %s temperature extrapolated toward/into surface assuming constant moist adiabatic lapse rate = %g K/(100 mb) for variable %s\n",nco_prg_nm_get(),fnc_nm,gamma_moist*10000.0,var_nm); | ^ nco_rgr.c:1990:13: note: 'FIRST_WARNING_RHS' was declared here 1990 | nco_bool FIRST_WARNING_RHS; /* [flg] First warning for RHS extrapolation */ | ^~~~~~~~~~~~~~~~~ nco_rgr.c:1936:12: warning: 'dat_in_mnt' may be used uninitialized in this function [-Wmaybe-uninitialized] 1936 | double *dat_in_mnt; /* Input data (to be interpolated) reversed if necessary along with input grid */ | ^~~~~~~~~~ nco_rgr.c:1934:12: warning: 'crd_in_mnt' may be used uninitialized in this function [-Wmaybe-uninitialized] 1934 | double *crd_in_mnt; /* Input vertical coordinate reversed if necessary to be monotonically increasing */ | ^~~~~~~~~~ nco_rgr.c:1937:12: warning: 'dat_out_mnt' may be used uninitialized in this function [-Wmaybe-uninitialized] 1937 | double *dat_out_mnt; /* Output data (interpolated) reversed if necessary along with output grid */ | ^~~~~~~~~~~ nco_rgr.c:1935:12: warning: 'crd_out_mnt' may be used uninitialized in this function [-Wmaybe-uninitialized] 1935 | double *crd_out_mnt; /* Output vertical coordinate reversed if necessary to be monotonically increasing */ | ^~~~~~~~~~~ nco_rgr.c: In function 'nco_rgr_wgt._omp_fn.0': nco_rgr.c:4989:25: warning: 'tm_srt' may be used uninitialized in this function [-Wmaybe-uninitialized] 4989 | tm_drn=(float)(tm_end-tm_srt)/CLOCKS_PER_SEC; | ~~~~~~~^~~~~~~~ nco_rgr.c:4766:10: note: 'tm_srt' was declared here 4766 | clock_t tm_srt; /* [us] Microseconds at start */ | ^~~~~~ nco_rgr.c: In function 'nco_rgr_ini': nco_rgr.c:478:9: warning: 'cnv_nbr' may be used uninitialized in this function [-Wmaybe-uninitialized] 478 | if(cnv_nbr != 4) cnv_nbr=sscanf(rgr_lst[rgr_var_idx].val,"%lf,%lf,%lf,%lf",&rgr->lon_wst,&rgr->lon_est,&rgr->lat_sth,&rgr->lat_nrt); | ^ nco_rgr.c: In function 'nco_ntp_vrt': nco_rgr.c:1355:68: warning: 'lev_in_min' may be used uninitialized in this function [-Wmaybe-uninitialized] 1355 | for(size_t idx_in=0;idx_inlst[idx_tbl].nm,plev_nm_in)) break; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_rgr.c:880:7: warning: 'dmn_nbr_out' may be used uninitialized in this function [-Wmaybe-uninitialized] 880 | int dmn_nbr_out; /* [nbr] Number of dimensions in output file */ | ^~~~~~~~~~~ nco_rgr.c:1398:9: warning: 'lev_nm_out' may be used uninitialized in this function [-Wmaybe-uninitialized] 1398 | rcd=nco_def_dim(out_id,lev_nm_out,lev_nbr_out,&dmn_id_lev_out); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_rgr.c:1410:5: warning: 'ilev_nm_out' may be used uninitialized in this function [-Wmaybe-uninitialized] 1410 | if(strcmp(dmn_nm,ilev_nm_out)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ nco_rgr.c: In function 'nco_sph_plg_area': nco_rgr.c:5922:27: warning: 'c_idx' may be used uninitialized in this function [-Wmaybe-uninitialized] 5922 | if(c_idx) c_idx=(long *)nco_free(c_idx); | ^~~~~~~~~~~~~~~ nco_rgr.c:5920:27: warning: 'a_idx' may be used uninitialized in this function [-Wmaybe-uninitialized] 5920 | if(a_idx) a_idx=(long *)nco_free(a_idx); | ^~~~~~~~~~~~~~~ nco_rgr.c:5921:27: warning: 'b_idx' may be used uninitialized in this function [-Wmaybe-uninitialized] 5921 | if(b_idx) b_idx=(long *)nco_free(b_idx); | ^~~~~~~~~~~~~~~ nco_rgr.c: In function 'nco_rgr_wgt': nco_rgr.c:4583:56: warning: 'dmn_nbr_out' may be used uninitialized in this function [-Wmaybe-uninitialized] 4583 | dmn_nbr_max= dmn_nbr_in > dmn_nbr_out ? dmn_nbr_in : dmn_nbr_out; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ nco_rgr.c: In function 'nco_grd_nfr': nco_rgr.c:8765:7: warning: 'lon_typ' may be used uninitialized in this function [-Wmaybe-uninitialized] 8765 | if(lon_typ == nco_grd_lon_nil){ | ^ nco_rgr.c:8628:7: warning: 'lat_typ' may be used uninitialized in this function [-Wmaybe-uninitialized] 8628 | if(lat_typ == nco_grd_lat_nil){ | ^ nco_rgr.c:8615:51: warning: 'lat_spn' may be used uninitialized in this function [-Wmaybe-uninitialized] 8615 | if(flg_s2n) lat_ctr_tst_fv=lat_ntf[0L]+lat_spn/(lat_nbr-1L); else lat_ctr_tst_fv=lat_ntf[0L]-lat_spn/(lat_nbr-1L); | ~~~~~~~^~~~~~~~~~~~~ nco_rgr.c:9087:31: warning: 'msk_unn.vp' may be used uninitialized in this function [-Wmaybe-uninitialized] 9087 | if(msk_unn.vp) msk_unn.vp=(void *)nco_free(msk_unn.vp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -release 4.9.3 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libnco.la -rpath /usr/lib64 nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_crt.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_grp_utl.lo nco_grp_trv.lo nco_kd.lo nco_lmt.lo nco_lst_utl.lo nco_map.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ply.lo nco_ply_lst.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_sph.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/10/crti.o /usr/lib/gcc/riscv64-redhat-linux/10/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_crt.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_kd.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_map.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_mta.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ply.o .libs/nco_ply_lst.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_sph.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -L/usr/lib64 -lnetcdf -lcurl -lgsl -lgslcblas -ludunits2 -L/usr/lib/gcc/riscv64-redhat-linux/10 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/10/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/10/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -fopenmp -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -fopenmp -Wl,-soname -Wl,libnco-4.9.3.so -o .libs/libnco-4.9.3.so libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-4.9.3.so" "libnco.so") libtool: link: ar cru .libs/libnco.a nco_att_utl.o nco_aux.o nco_bnr.o nco_cln_utl.o nco_cnf_dmn.o nco_cnf_typ.o nco_cnk.o nco_cnv_arm.o nco_cnv_csm.o nco_crt.o nco_ctl.o nco_dbg.o nco_dmn_utl.o nco_fl_utl.o nco_grp_utl.o nco_grp_trv.o nco_kd.o nco_lmt.o nco_lst_utl.o nco_map.o nco_md5.o nco_mmr.o nco_msa.o nco_mss_val.o nco_mta.o nco_netcdf.o nco_omp.o nco_pck.o nco_ply.o nco_ply_lst.o nco_ppc.o nco_prn.o nco_rec_var.o nco_rgr.o nco_rth_flt.o nco_rth_utl.o nco_scl_utl.o nco_scm.o nco_sld.o nco_sng_utl.o nco_sph.o nco_srm.o nco_var_avg.o nco_var_lst.o nco_var_rth.o nco_var_scv.o nco_var_utl.o libtool: link: ranlib .libs/libnco.a libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncbo ncbo.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncbo ncbo.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncflint ncflint.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions 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-D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncecat ncecat.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncecat ncecat.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh 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libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncpdq ncpdq.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-fasynchronous-unwind-tables -fstack-clash-protection -c -o libnco_c___la-nco_att.lo `test -f 'nco_att.cc' || echo './'`nco_att.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nco_att.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_att.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nco_att.cc -o libnco_c___la-nco_att.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco_c++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco_c++' /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libnco_c___la-nco_utl.lo `test -f 'nco_utl.cc' || echo './'`nco_utl.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nco_utl.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_utl.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nco_utl.cc -o libnco_c___la-nco_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco_c++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco_c++' /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libnco_c___la-nco_var.lo `test -f 'nco_var.cc' || echo './'`nco_var.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nco_var.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_var.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nco_var.cc -o libnco_c___la-nco_var.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco_c++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco_c++' /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -release 4.9.3 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libnco_c++.la -rpath /usr/lib64 libnco_c___la-nco_att.lo libnco_c___la-nco_dmn.lo libnco_c___la-nco_fl.lo libnco_c___la-nco_hgh.lo libnco_c___la-nco_utl.lo libnco_c___la-nco_var.lo -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/10/crti.o /usr/lib/gcc/riscv64-redhat-linux/10/crtbeginS.o .libs/libnco_c___la-nco_att.o .libs/libnco_c___la-nco_dmn.o .libs/libnco_c___la-nco_fl.o .libs/libnco_c___la-nco_hgh.o .libs/libnco_c___la-nco_utl.o .libs/libnco_c___la-nco_var.o -L/usr/lib64 -lnetcdf -lcurl -lgsl -lgslcblas -ludunits2 -L/usr/lib/gcc/riscv64-redhat-linux/10 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/10/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/10/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -Wl,-soname -Wl,libnco_c++-4.9.3.so -o .libs/libnco_c++-4.9.3.so libtool: link: (cd ".libs" && rm -f "libnco_c++.so" && ln -s "libnco_c++-4.9.3.so" "libnco_c++.so") libtool: link: ar cru .libs/libnco_c++.a libnco_c___la-nco_att.o libnco_c___la-nco_dmn.o libnco_c___la-nco_fl.o libnco_c___la-nco_hgh.o libnco_c___la-nco_utl.o libnco_c___la-nco_var.o libtool: link: ranlib .libs/libnco_c++.a libtool: link: ( cd ".libs" && rm -f "libnco_c++.la" && ln -s "../libnco_c++.la" "libnco_c++.la" ) make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco_c++' Making all in nco++ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ncap2_att.o ncap2_att.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sdo_utl.o sdo_utl.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o Invoke.o Invoke.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' In file included from libnco++.hh:26, from Invoke.cc:13: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from fmc_gsl_cls.hh:12, from libnco++.hh:26, from Invoke.cc:13: ../../config.h:468: note: this is the location of the previous definition 468 | #define NCO_GSL_VERSION 205 | make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sym_cls.o sym_cls.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ncap2.o ncap2.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' In file included from libnco++.hh:26, from ncap2.cc:80: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from fmc_gsl_cls.hh:12, from libnco++.hh:26, from ncap2.cc:80: ../../config.h:468: note: this is the location of the previous definition 468 | #define NCO_GSL_VERSION 205 | make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o fmc_cls.o fmc_cls.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o prs_cls.o prs_cls.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o NcapVar.o NcapVar.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o NcapVarVector.o NcapVarVector.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ncap2_utl.o ncap2_utl.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o fmc_gsl_cls.o fmc_gsl_cls.cc In file included from fmc_gsl_cls.cc:10: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from ncap2_att.hh:5, from ncap2_utl.hh:60, from ncoGrammer.g:31, from fmc_gsl_cls.hh:43, from fmc_gsl_cls.cc:10: ../../config.h:468: note: this is the location of the previous definition 468 | #define NCO_GSL_VERSION 205 | In file included from nco_gsl.h:31, from fmc_gsl_cls.cc:11: ../../config.h:468: warning: "NCO_GSL_VERSION" redefined 468 | #define NCO_GSL_VERSION 205 | In file included from fmc_gsl_cls.cc:10: fmc_gsl_cls.hh:49: note: this is the location of the previous definition 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | fmc_gsl_cls.cc: In member function 'var_sct* gsl_mfit_cls::mfit_fnd(bool&, std::vector >&, fmc_cls&, ncoTree&)': fmc_gsl_cls.cc:5209:53: warning: 'var_tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] 5209 | var_tmp->val.vp=(void *)nco_malloc_flg(var_tmp->sz*nco_typ_lng(var_tmp->type)); | ~~~~~~~~~^~ make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ncoLexer.o ncoLexer.cpp make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' ncoLexer.cpp: In member function 'void ncoLexer::mASSIGN(bool)': ncoLexer.cpp:416:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 416 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mPLUS_ASSIGN(bool)': ncoLexer.cpp:430:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 430 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mMINUS_ASSIGN(bool)': ncoLexer.cpp:444:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 444 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mTIMES_ASSIGN(bool)': ncoLexer.cpp:458:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 458 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDIVIDE_ASSIGN(bool)': ncoLexer.cpp:472:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 472 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mINC(bool)': ncoLexer.cpp:486:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 486 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDEC(bool)': ncoLexer.cpp:500:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 500 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mQUESTION(bool)': ncoLexer.cpp:514:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 514 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLPAREN(bool)': ncoLexer.cpp:528:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 528 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mRPAREN(bool)': ncoLexer.cpp:542:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 542 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLCURL(bool)': ncoLexer.cpp:556:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 556 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mRCURL(bool)': ncoLexer.cpp:570:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 570 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLSQUARE(bool)': ncoLexer.cpp:584:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 584 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mRSQUARE(bool)': ncoLexer.cpp:598:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 598 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCOMMA(bool)': ncoLexer.cpp:612:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 612 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mQUOTE(bool)': ncoLexer.cpp:626:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 626 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mSEMI(bool)': ncoLexer.cpp:640:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 640 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCOLON(bool)': ncoLexer.cpp:654:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 654 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCARET(bool)': ncoLexer.cpp:668:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 668 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mTIMES(bool)': ncoLexer.cpp:682:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 682 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDIVIDE(bool)': ncoLexer.cpp:696:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 696 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mMOD(bool)': ncoLexer.cpp:710:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 710 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mPLUS(bool)': ncoLexer.cpp:724:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 724 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mMINUS(bool)': ncoLexer.cpp:738:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 738 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mEQ(bool)': ncoLexer.cpp:752:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 752 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mNEQ(bool)': ncoLexer.cpp:766:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 766 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLTHAN(bool)': ncoLexer.cpp:780:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 780 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mGTHAN(bool)': ncoLexer.cpp:794:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 794 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLEQ(bool)': ncoLexer.cpp:808:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 808 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mGEQ(bool)': ncoLexer.cpp:822:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 822 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mFLTHAN(bool)': ncoLexer.cpp:836:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 836 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mFGTHAN(bool)': ncoLexer.cpp:850:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 850 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLAND(bool)': ncoLexer.cpp:864:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 864 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLNOT(bool)': ncoLexer.cpp:878:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 878 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLOR(bool)': ncoLexer.cpp:892:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 892 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDOT(bool)': ncoLexer.cpp:906:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 906 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCALL_REF(bool)': ncoLexer.cpp:920:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 920 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDGT(bool)': ncoLexer.cpp:934:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 934 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLPH(bool)': ncoLexer.cpp:950:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 950 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLPHDGT(bool)': ncoLexer.cpp:1036:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1036 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mXPN(bool)': ncoLexer.cpp:1136:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1136 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mVAR_NM_QT(bool)': ncoLexer.cpp:1212:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1212 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mBLASTOUT(bool)': ncoLexer.cpp:1340:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1340 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mUNUSED_OPS(bool)': ncoLexer.cpp:1370:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1370 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mWS(bool)': ncoLexer.cpp:1422:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1422 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCXX_COMMENT(bool)': ncoLexer.cpp:1472:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1472 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mC_COMMENT(bool)': ncoLexer.cpp:1502:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1502 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mNUMBER_DOT(bool)': ncoLexer.cpp:1560:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1560 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mNUMBER(bool)': ncoLexer.cpp:1684:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1684 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mVAR_ATT(bool)': ncoLexer.cpp:2036:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 2036 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mATT_ID(bool)': ncoLexer.cpp:2317:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 2317 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mINCLUDE(bool)': ncoLexer.cpp:2688:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 2688 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' gcc -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_gsl.o nco_gsl.c make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /usr/include/gsl/gsl_statistics_long_double.h:24, from /usr/include/gsl/gsl_statistics.h:4, from nco_gsl.h:36, from nco_gsl.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_gsl.c:14:1: warning: 'compute_covariance' defined but not used [-Wunused-function] 14 | compute_covariance | ^~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o fmc_all_cls.o fmc_all_cls.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' fmc_all_cls.cc: In member function 'virtual var_sct* polygon_cls::fnd(antlr::RefAST, antlr::RefAST, fmc_cls&, ncoTree&)': fmc_all_cls.cc:6145:12: warning: unused variable 'brep' [-Wunused-variable] 6145 | bool brep=false | ^~~~ fmc_all_cls.cc:6147:14: warning: unused variable 'pdlon' [-Wunused-variable] 6147 | double pdlon=1e10; | ^~~~~ fmc_all_cls.cc:6148:14: warning: unused variable 'pdlat' [-Wunused-variable] 6148 | double pdlat=1e10; | ^~~~~ In file included from /usr/include/string.h:504, from ../nco/nco_uthash.h:33, from ../nco/nco.h:30, from prs_cls.hh:15, from ncoGrammer.g:30, from fmc_all_cls.hh:19, from fmc_all_cls.cc:10: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'virtual var_sct* print_cls::fnd(antlr::RefAST, antlr::RefAST, fmc_cls&, ncoTree&)' at fmc_all_cls.cc:5601:15: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc: In member function 'virtual var_sct* print_cls::fnd(antlr::RefAST, antlr::RefAST, fmc_cls&, ncoTree&)': fmc_all_cls.cc:5597:17: note: length computed here 5597 | sz=strlen(cp); | ~~~~~~^~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ncoParser.o ncoParser.cpp make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ncoTree.o ncoTree.cpp make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection ../nco/libnco.la -lantlr -lgsl -lgslcblas -lm -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o ../nco/.libs/libnco.so -lantlr -L/usr/lib64 -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Nothing to be done for 'all-am'. Making all in man make[2]: Nothing to be done for 'all'. Making all in doc make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/doc' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/sh /builddir/build/BUILD/nco-4.9.3/autobld/missing makeinfo --version) >/dev/null 2>&1; then \ for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/sh /builddir/build/BUILD/nco-4.9.3/autobld/missing makeinfo -I . \ -o nco.info nco.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./nco.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/doc' + make -C doc html pdf make: Entering directory '/builddir/build/BUILD/nco-4.9.3/doc' rm -rf nco.htp if /bin/sh /builddir/build/BUILD/nco-4.9.3/autobld/missing makeinfo --html --ifinfo --no-split -I . \ -o nco.htp nco.texi; \ then \ rm -rf nco.html && mv nco.htp nco.html; \ else \ rm -rf nco.htp; exit 1; \ fi TEXINPUTS="../autobld:$TEXINPUTS" \ MAKEINFO='/bin/sh /builddir/build/BUILD/nco-4.9.3/autobld/missing makeinfo -I .' \ texi2dvi --pdf --batch --build-dir=nco.t2p -o nco.pdf \ nco.texi This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-4.9.3/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/builddir/build/BUILD/nco-4.9.3/doc/my-bib-macros.texi) [1{/usr/share/texlive/ texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] [-2] (Foreword) [1] [2] (Summary) [3] [4] Chapter 1 [5] [6] Cross reference values unknown; you must run TeX again. [7] [8] [9] [10] [11] [12] [13] Overfull \hbox (32.18782pt too wide) in paragraph at lines 1399--1399 []@texttt ncks fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)[] [14] [15] Chapter 2 [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 3 [27] [28] [29] [30] [31] [32] Overfull \hbox (55.18257pt too wide) in paragraph at lines 3077--3077 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3105--3105 [][] [33] [34] [35] [36] [37] [38] [39] [40] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3819--3819 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] Overfull \hbox (382.85777pt too wide) in paragraph at lines 3866--3866 []@texttt ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/ope ndap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5[] Overfull \hbox (658.79478pt too wide) in paragraph at lines 3868--3868 []@texttt ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u _velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtof s_glo_2ds_forecast_daily_prog ~/foo.nc[] [41] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3941--3941 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [42] [43] [44] [45] [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 4342--4342 []@texttt # Convert file with groups, multiple record dimensions + netCDF4 ato mic types[] [47] [48] [49] [50] [51] [52] [53] [54] [55] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5109--5109 []@texttt ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /ces m to /[] [56] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5264--5264 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5264--5264 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 5264--5264 [][] Overfull \hbox (49.43388pt too wide) in paragraph 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10773--10773 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [128] [129] [130] [131] Overfull \hbox (43.6852pt too wide) in paragraph at lines 11152--11152 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 11153--11153 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 11154--11154 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11155--11155 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] [132] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11163--11163 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] Overfull \hbox (14.94176pt too wide) in 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in paragraph at lines 14285--14285 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14285--14285 [][] [175] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14376--14376 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14401--14401 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [176] [177] [178] [179] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14603--14603 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] [180] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14620--14620 [] @texttt 4. 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15786--15786 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 15803--15803 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 15804--15804 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15805--15805 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 15812--15812 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 15813--15813 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 15814--15814 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [201] [202] Overfull \hbox (175.90501pt too wide) in paragraph at lines 15920--15920 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15922--15922 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [203] [204] [205] [206] [207] Underfull \hbox (badness 10000) in paragraph at lines 16445--16461 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 16505--16521 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 16591--16601 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [208] [209] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16803--16803 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16803--16803 [][] [210] [211] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16881--16881 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16887--16887 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] Overfull \hbox (60.93126pt too wide) in paragraph at lines 17989--17989 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [225] [226] [227] [228] [229] [230] [231] Overfull \hbox (38.26584pt too wide) in paragraph at lines 18688--18688 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 18689--18689 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [232] [233] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18889--18889 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18891--18891 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [234] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18957--18957 [][] [235] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19002--19002 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [236] [237] Underfull \hbox (badness 10000) in paragraph at lines 19176--19176 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - Underfull \hbox (badness 10000) in paragraph at lines 19177--19177 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 19207--19207 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] [238] Overfull \hbox (72.42863pt too wide) in paragraph at lines 19213--19213 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 19214--19214 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] [239] [240] Overfull \hbox (49.43388pt too wide) in paragraph at lines 19353--19353 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19360--19360 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 19362--19362 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [241] Overfull \hbox (55.18257pt too wide) in paragraph at lines 19430--19430 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19436--19436 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19463--19463 [][] [242] [243] [244] Overfull \hbox (55.18257pt too wide) in paragraph at lines 19690--19690 [][] [245] [246] [247] [248] Overfull \hbox (20.69044pt too wide) in paragraph at lines 20007--20007 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 20008--20008 []@texttt [-O] [-o @textttsl output- [249] [250] [251] [252] [253] Overfull \hbox (43.6852pt too wide) in paragraph at lines 20480--20480 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [254] [255] [256] Overfull \hbox (32.51715pt too wide) in paragraph at lines 20734--20734 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 20735--20735 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at 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21338--21338 []@texttt /usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local build s)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 21339--21339 []@texttt /usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 21340--21340 []@texttt /usr/bin/h4_ncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Ana conda)[] Overfull \hbox (124.49615pt too wide) in paragraph at lines 21341--21341 []@texttt /usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Deb ian packages?)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 21342--21342 []@texttt hdp dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 21343--21343 []@texttt h4_ncdump dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] [265] Overfull \hbox (61.26059pt too wide) in paragraph at lines 21423--21423 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out .nc[] [266] [267] Overfull \hbox (549.89905pt too wide) in paragraph at lines 21536--21536 [][] Overfull \hbox (463.66873pt too wide) in paragraph at lines 21536--21536 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 21566--21566 [][] Overfull \hbox (94.43918pt too wide) in paragraph at lines 21566--21566 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 21566--21566 [][] [268] Overfull \hbox (123.18262pt too wide) in paragraph at lines 21631--21631 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 21631--21631 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 21631--21631 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 21631--21631 [][] [269] Overfull \hbox (123.18262pt too wide) in paragraph at lines 21670--21670 [][] Overfull \hbox (111.68524pt too wide) in paragraph at lines 21670--21670 [][] Overfull \hbox (232.40768pt too wide) in paragraph at lines 21670--21670 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 21670--21670 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 21670--21670 [][] [270] Overfull \hbox (78.50665pt too wide) in paragraph at lines 21835--21835 [][] [271] Overfull \hbox (95.75272pt too wide) in paragraph at lines 21917--21917 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0. 123456789[] Overfull \hbox (193.48041pt too wide) in paragraph at lines 21920--21920 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567, 0.12345678, 0.123456789 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 21925--21925 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0 .123 ;[] [272] Overfull \hbox (78.50665pt too wide) in paragraph at lines 22009--22009 [][] Overfull \hbox (147.4909pt too wide) in paragraph at lines 22052--22052 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 22052--22052 [][] [273] Underfull \hbox (badness 10000) in paragraph at lines 22067--22082 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 22100--22100 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 22100--22100 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 22100--22100 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 22100--22100 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22172--22172 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] [274] Overfull \hbox (129.91551pt too wide) in paragraph at lines 22185--22185 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 22193--22193 [][] Overfull \hbox (262.13533pt too wide) in paragraph at lines 22291--22291 [][] Overfull 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paragraph at lines 22371--22371 []@texttt # Change values to be sure original values are not copied in followi ng step[] [277] [278] [279] Overfull \hbox (32.18784pt too wide) in paragraph at lines 22591--22591 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [- v @textttsl var@texttt [,[]]] [-X ...] [-x][] [280] [281] Underfull \hbox (badness 10000) in paragraph at lines 22785--22790 []@textsl pck[]map[] @textrm key val-ues: `@texttt dbl_flt[]@textrm '[], `@tex ttt pck_map_dbl_flt[]@textrm '[], `@texttt dbl_sgl[]@textrm '[], [282] Underfull \hbox (badness 10000) in paragraph at lines 22791--22797 []@textsl pck[]map[] @textrm key val-ues: `@texttt flt_dbl[]@textrm '[], `@tex ttt pck_map_flt_dbl[]@textrm '[], `@texttt sgl_dbl[]@textrm '[], [283] [284] [285] [286] [287] Overfull \hbox (55.18257pt too wide) in paragraph at lines 23172--23172 []@texttt ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 23185--23185 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim ension[] [288] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23234--23234 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 23239--23239 []@texttt [-O] [-o @textttsl output- Overfull \hbox (37.93651pt too wide) in paragraph at lines 23239--23239 @textttsl file@texttt ] [-p @textttsl path@texttt ] [--ppc ...] [-R] [-r] [--r am_all] [--rec_apn] [--rth_dbl|flt][] [289] [290] [291] [292] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23484--23484 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 23489--23489 []@texttt [-O] [-o @textttsl output- [293] [294] Overfull \hbox (72.42863pt too wide) in paragraph at lines 23620--23620 []@texttt [--dt_sng=@textttsl dt_sng@texttt ] [--esmf_nsp=@textttsl esmf_nsp@t exttt ] [--esmf_typ=@textttsl esmf_typ@texttt ] [--esmf_xpn=@textttsl esmf_xpn@ texttt ][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 23624--23624 []@texttt [--msk_dst=@textttsl msk_dst@texttt ] [--msk_out=@textttsl msk_out@t exttt ] [--msk_src=@textttsl msk_src@texttt ] [--mss_val=@textttsl mss_val@text tt ][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23628--23628 []@texttt [--preserve=@textttsl prs_stt@texttt ] [-R @textttsl rgr_opt@texttt ] [--rgn_dst] [--rgn_src] [--rnr_thr=@textttsl rnr_thr@texttt ][] [295] [296] Underfull \hbox (badness 6741) in paragraph at lines 23875--23886 @texttt lonCell[]@textrm , @texttt lonEdge[]@textrm , @texttt lonVertex[]@textr m , @texttt maxLevelEdgeTop[]@textrm , @texttt meshDensity[]@textrm , @texttt n EdgesOnCell[]@textrm , [297] Underfull \hbox (badness 10000) in paragraph at lines 24094--24095 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv --mono Underfull \hbox (badness 10000) in paragraph at lines 24096--24100 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv [298] Underfull \hbox (badness 10000) in paragraph at lines 24101--24102 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 24105--24106 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv --mono3 Underfull \hbox (badness 10000) in paragraph at lines 24111--24112 []@textrm Options: `@texttt --in_type fv --in_np 2 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 24115--24116 []@textrm Options: `@texttt --in_type fv --in_np 2 --out_type fv [299] [300] [301] [302] [303] Overfull \hbox (55.5119pt too wide) in paragraph at lines 24580--24580 [][] Overfull \hbox (141.74222pt too wide) in paragraph at lines 24580--24580 [][] Overfull \hbox (176.23434pt too wide) in paragraph at lines 24580--24580 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 24580--24580 [][] Overfull \hbox (61.26059pt too wide) in paragraph at lines 24580--24580 [][] Overfull \hbox (135.99353pt too wide) in paragraph at lines 24580--24580 [][] Overfull \hbox (204.97778pt too wide) in paragraph at lines 24589--24589 [][] [304] [305] [306] [307] [308] Overfull \hbox (184.8606pt too wide) in paragraph at lines 25068--25118 @texttt Time,depth,nVertLevels,nVertLevelsP1,maxEdges,MaxEdges2,nCategories,R3 ,ONE,TWO,FOUR,nEdges,nCells[]@textrm , [309] Overfull \hbox (15.27109pt too wide) in paragraph at lines 25174--25174 [][] [310] Overfull \hbox (15.27109pt too wide) in paragraph at lines 25197--25197 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 25197--25197 [][] Overfull 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) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/mcc_grp.sh [365]) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/rgr.sh [366] Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 6--6 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10--10 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 27--27 [][][][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 28--28 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 33--33 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 37--37 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/bi_interp.nco [367] Overfull \hbox (14.94176pt too wide) in paragraph at lines 34--34 [][][][] [368] Overfull \hbox (20.69044pt too wide) in paragraph at lines 61--61 [][][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/add_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 5--5 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 6--6 [][][][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 8--8 [][][] [369] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [370] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [371] [372] Overfull \hbox (60.93126pt too wide) in paragraph at lines 28461--28461 [][] Chapter 9 [373] [374] Overfull \hbox (14.94176pt too wide) in paragraph at lines 28771--28771 [][] [375] [376] [377] [378] Overfull \hbox (37.93651pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 28771--28771 [][] [379] Overfull \hbox (693.28691pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 28771--28771 [][] [380] Chapter 10 [381] [382] (General Index) [383] [384] [385] [386] ) (see the transcript file for additional information) Output written on nco.pdf (390 pages, 1482197 bytes). Transcript written on nco.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-4.9.3/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) 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[124] [125] [126] [127] Overfull \hbox (20.69044pt too wide) in paragraph at lines 10766--10766 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10773--10773 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [128] [129] [130] [131] Overfull \hbox (43.6852pt too wide) in paragraph at lines 11152--11152 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 11153--11153 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 11154--11154 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11155--11155 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc 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11668--11668 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11668--11668 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 11668--11668 [][] Overfull \hbox (193.15108pt too wide) in paragraph at lines 11668--11668 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11668--11668 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11668--11668 [][] [139] [140] Underfull \hbox (badness 6741) in paragraph at lines 11906--11951 @texttt areaTriangle[]@textrm , @texttt cellMask[]@textrm , @texttt cellsOnCell []@textrm , @texttt cellsOnEdge[]@textrm , @texttt cellsOnVertex[]@textrm , @te xttt dcEdge[]@textrm , [141] [142] [143] [144] Chapter 4 Underfull \hbox (badness 10000) in paragraph at lines 12320--12341 @texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by [145] [146] [147] [148] [149] [150] [151] [152] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12812--12812 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12815--12815 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [153] [154] Overfull \hbox (89.6747pt too wide) in paragraph at lines 12972--12972 [][] [155] Overfull \hbox (89.6747pt too wide) in paragraph at lines 13011--13011 []@texttt (C) var_out=array(val_srt,val_inc,/$dmn1,$dmn2...,$dmnN/); // Multi- dimensional output[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13028--13028 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] [156] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13057--13057 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [157] [158] [159] [160] Overfull \hbox (118.41814pt too wide) in paragraph at lines 13329--13329 [][] [161] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13433--13433 [][] [162] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13452--13452 [][] [163] [164] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13623--13623 [][] [165] Overfull \hbox (101.17207pt too wide) in paragraph at lines 13649--13649 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13660--13660 [][] [166] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13707--13707 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 13707--13707 [][] [167] [168] [169] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13958--13958 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc foo.nc[] [170] [171] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14098--14098 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [172] [173] Underfull \hbox (badness 10000) in paragraph at lines 14224--14233 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 14243--14243 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14285--14285 [][] [174] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14285--14285 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14285--14285 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14285--14285 [][] [175] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14376--14376 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14401--14401 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [176] [177] [178] [179] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14603--14603 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] [180] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14620--14620 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [181] [182] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14749--14749 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14749--14749 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14749--14749 [][] Overfull \hbox (187.40239pt too wide) in paragraph at lines 14757--14757 [][] [183] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14825--14825 [][] [184] Overfull \hbox (175.90501pt too wide) in paragraph at lines 14896--14896 [][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14896--14896 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14908--14908 [][] [185] [186] Overfull \hbox (89.6747pt too wide) in paragraph at lines 15036--15036 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 15053--15053 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 15086--15086 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [187] [188] [189] [190] Overfull \hbox (12.86244pt too wide) in paragraph at lines 15370--15371 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 15378--15379 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 15382--15383 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 15386--15387 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 15390--15391 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 15406--15407 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 15411--15412 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 15429--15429 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 15430--15430 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 15437--15437 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 15462--15463 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 15541--15542 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 15542--15543 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 15543--15544 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 15544--15544 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 15544--15545 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 15553--15554 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 15562--15563 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 15563--15563 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 15565--15566 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 15566--15566 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 15627--15627 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [191] [192] [193] [194] [195] [196] [197] [198] Underfull \hbox (badness 10000) in paragraph at lines 15701--15703 []@texttt status=@textbf gsl[]fit[]linear Underfull \hbox (badness 10000) in paragraph at lines 15714--15715 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ [199] Underfull \hbox (badness 10000) in paragraph at lines 15732--15733 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ Overfull \hbox (14.94176pt too wide) in paragraph at lines 15758--15758 [][] Overfull \hbox (158.65895pt too wide) in paragraph at lines 15786--15786 [][] [200] Overfull \hbox (118.41814pt too wide) in paragraph at lines 15786--15786 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 15786--15786 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 15803--15803 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 15804--15804 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15805--15805 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 15812--15812 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 15813--15813 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 15814--15814 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [201] [202] Overfull \hbox (175.90501pt too wide) in paragraph at lines 15920--15920 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15922--15922 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [203] [204] [205] [206] [207] Underfull \hbox (badness 10000) in paragraph at lines 16445--16461 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 16505--16521 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 16591--16601 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [208] [209] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16803--16803 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16803--16803 [][] [210] [211] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16881--16881 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16887--16887 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] Overfull \hbox (60.93126pt too wide) in paragraph at lines 17989--17989 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [225] [226] [227] [228] [229] [230] [231] Overfull \hbox (38.26584pt too wide) in paragraph at lines 18688--18688 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 18689--18689 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [232] [233] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18889--18889 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18891--18891 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [234] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18957--18957 [][] [235] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19002--19002 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [236] [237] Underfull \hbox (badness 10000) in paragraph at lines 19176--19176 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - Underfull \hbox (badness 10000) in paragraph at lines 19177--19177 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 19207--19207 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] [238] Overfull \hbox (72.42863pt too wide) in paragraph at lines 19213--19213 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 19214--19214 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] [239] [240] Overfull \hbox (49.43388pt too wide) in paragraph at lines 19353--19353 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19360--19360 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 19362--19362 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [241] Overfull \hbox (55.18257pt too wide) in paragraph at lines 19430--19430 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19436--19436 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19463--19463 [][] [242] [243] [244] Overfull \hbox (55.18257pt too wide) in paragraph at lines 19690--19690 [][] [245] [246] [247] [248] Overfull \hbox (20.69044pt too wide) in paragraph at lines 20007--20007 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 20008--20008 []@texttt [-O] [-o @textttsl output- [249] [250] [251] [252] [253] Overfull \hbox (43.6852pt too wide) in paragraph at lines 20480--20480 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [254] [255] [256] Overfull \hbox (32.51715pt too wide) in paragraph at lines 20734--20734 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 20735--20735 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at 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21338--21338 []@texttt /usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local build s)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 21339--21339 []@texttt /usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 21340--21340 []@texttt /usr/bin/h4_ncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Ana conda)[] Overfull \hbox (124.49615pt too wide) in paragraph at lines 21341--21341 []@texttt /usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Deb ian packages?)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 21342--21342 []@texttt hdp dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 21343--21343 []@texttt h4_ncdump dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] [265] Overfull \hbox (61.26059pt too wide) in paragraph at lines 21423--21423 []@texttt % ncks --trd -H -d lat,90.0 -d 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too wide) in paragraph at lines 23185--23185 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim ension[] [288] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23234--23234 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 23239--23239 []@texttt [-O] [-o @textttsl output- Overfull \hbox (37.93651pt too wide) in paragraph at lines 23239--23239 @textttsl file@texttt ] [-p @textttsl path@texttt ] [--ppc ...] [-R] [-r] [--r am_all] [--rec_apn] [--rth_dbl|flt][] [289] [290] [291] [292] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23484--23484 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] 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[332] Overfull \hbox (216.14583pt too wide) in paragraph at lines 27038--27038 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 27057--27057 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 27057--27057 [][] Overfull \hbox (106.92076pt too wide) in paragraph at lines 27057--27057 [][] [333] [334] Overfull \hbox (49.4339pt too wide) in paragraph at lines 27132--27132 []@texttt ncwa [-3] [-4] [-5] [-6] [-7] [-A] [-a @textttsl dim@texttt [,[]]] [ -B @textttsl mask_cond@texttt ] [-b] [-C] [-c][] Overfull \hbox (20.69046pt too wide) in paragraph at lines 27136--27136 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl b ...] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss] [-I][] Underfull \hbox (badness 10000) in paragraph at lines 27139--27139 []@texttt [-O] [-o @textttsl output- [335] [336] [337] [338] Chapter 5 [339] [340] [341] [342] [343] Chapter 6 [344] [345] Chapter 7 [346] (/builddir/build/BUILD/nco-4.9.3/doc/xmp/cmb_fl.sh 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[361]) [362] (/builddir/build/BUILD/nco-4.9.3/doc/xmp/mcc.sh Overfull \hbox (20.69044pt too wide) in paragraph at lines 20--20 [][][][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21--21 [][][] [363] Overfull \hbox (72.42863pt too wide) in paragraph at lines 41--41 [][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 48--48 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 49--49 [][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 51--51 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 52--52 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 61--61 [][][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 63--63 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 68--68 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 71--71 [][] [364] Overfull \hbox (43.6852pt too wide) in paragraph at lines 76--76 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 77--77 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/mcc_grp.sh [365]) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/rgr.sh [366] Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 6--6 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10--10 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 27--27 [][][][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 28--28 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 33--33 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 37--37 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/bi_interp.nco [367] Overfull \hbox (14.94176pt too wide) in paragraph at lines 34--34 [][][][] [368] Overfull \hbox (20.69044pt too wide) in paragraph at lines 61--61 [][][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/add_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 5--5 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 6--6 [][][][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 8--8 [][][] [369] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [370] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [371] [372] Overfull \hbox (60.93126pt too wide) in paragraph at lines 28461--28461 [][] Chapter 9 [373] [374] Overfull \hbox (14.94176pt too wide) in paragraph at lines 28771--28771 [][] [375] [376] [377] [378] Overfull \hbox (37.93651pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 28771--28771 [][] [379] Overfull \hbox (693.28691pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 28771--28771 [][] [380] Chapter 10 [381] [382] (General Index) [383] [384] (./nco.cps [385] [386] [387] [388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] [404]) [405] [406] ) (see the transcript file for additional information) Output written on nco.pdf (414 pages, 1738908 bytes). Transcript written on nco.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-4.9.3/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./nco.aux) (/builddir/build/BUILD/nco-4.9.3/doc/my-bib-macros.texi) [1{/usr/share/texlive/ texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (./nco.toc [-1] [-2] [-3] [-4]) [-5] [-6] (./nco.toc) (./nco.toc) (Foreword) [1] [2] (Summary) [3] [4] Chapter 1 [5] [6] [7] [8] [9] [10] [11] [12] Overfull \hbox (32.18782pt too wide) in paragraph at lines 1399--1399 []@texttt ncks fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)[] [13] [14] [15] Chapter 2 [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 3 [27] [28] [29] [30] [31] [32] Overfull \hbox (55.18257pt too wide) in paragraph at lines 3077--3077 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3105--3105 [][] [33] [34] [35] [36] [37] [38] [39] [40] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3819--3819 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] Overfull \hbox (382.85777pt too wide) in paragraph at lines 3866--3866 []@texttt ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/ope ndap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5[] Overfull \hbox (658.79478pt too wide) in paragraph at lines 3868--3868 []@texttt ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u _velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtof s_glo_2ds_forecast_daily_prog ~/foo.nc[] [41] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3941--3941 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [42] [43] [44] [45] [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 4342--4342 []@texttt # Convert file with groups, multiple record dimensions + netCDF4 ato mic types[] [47] [48] [49] [50] [51] [52] [53] [54] [55] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5109--5109 []@texttt ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /ces m to /[] [56] Overfull 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too wide) in paragraph at lines 5264--5264 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5264--5264 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 5264--5264 [][] Overfull \hbox (175.90501pt too wide) in paragraph at lines 5264--5264 [][][] Overfull \hbox (480.58546pt too wide) in paragraph at lines 5264--5264 [][][] Overfull \hbox (129.91551pt too wide) in paragraph at lines 5264--5264 [][][] [58] Overfull \hbox (221.89452pt too wide) in paragraph at lines 5264--5264 [][][] Overfull \hbox (1354.386pt too wide) in paragraph at lines 5264--5264 [][][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 5264--5264 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 5323--5323 [][] [59] Overfull \hbox (135.6642pt too wide) in paragraph at lines 5323--5323 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 5323--5323 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 5323--5323 [][] Overfull \hbox (20.69044pt too 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Overfull \hbox (239.14058pt too wide) in paragraph at lines 6822--6822 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 6857--6857 [][] [80] [81] Overfull \hbox (95.42339pt too wide) in paragraph at lines 6977--6977 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 6977--6977 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6977--6977 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6977--6977 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 6977--6977 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6977--6977 [][] [82] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7006--7006 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7006--7006 [][] Underfull \hbox (badness 10000) in paragraph at lines 7039--7047 []@textrm `@texttt --rnr=@textttsl rnr_thr[]@textrm '[] or `@texttt --rgr_rnr=@ textttsl rnr_thr[]@textrm '[] or `@texttt --renormalize=@textttsl rnr_thr[]@tex trm '[] or [83] [84] Overfull \hbox (37.93651pt too wide) in paragraph at lines 7222--7222 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 7222--7222 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 7222--7222 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7222--7222 [][] [85] [86] [87] [88] [89] [90] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7708--7708 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7708--7708 [][] [91] [92] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7848--7848 [][] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] Overfull \hbox (55.18257pt too wide) in paragraph at lines 9690--9690 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h 0.0001-01.nc[] [115] [116] [117] [118] [119] Overfull \hbox (78.17732pt too wide) in paragraph at lines 10101--10101 [][] [120] [121] [122] [123] [124] [125] [126] [127] Overfull \hbox (20.69044pt too wide) in paragraph at lines 10766--10766 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10773--10773 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [128] [129] [130] [131] Overfull \hbox (43.6852pt too wide) in paragraph at lines 11152--11152 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 11153--11153 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 11154--11154 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11155--11155 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11163--11163 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [132] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11205--11205 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [133] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11280--11280 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [134] [135] [136] Overfull \hbox (32.18782pt too wide) in paragraph at lines 11468--11468 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [137] [138] Overfull \hbox (112.66945pt too wide) in paragraph at lines 11668--11668 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11668--11668 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11668--11668 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 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defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12815--12815 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [153] [154] Overfull \hbox (89.6747pt too wide) in paragraph at lines 12972--12972 [][] [155] Overfull \hbox (89.6747pt too wide) in paragraph at lines 13011--13011 []@texttt (C) var_out=array(val_srt,val_inc,/$dmn1,$dmn2...,$dmnN/); // Multi- dimensional output[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13028--13028 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] [156] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13057--13057 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [157] [158] [159] [160] Overfull \hbox (118.41814pt too wide) in paragraph at lines 13329--13329 [][] [161] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13433--13433 [][] [162] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13452--13452 [][] [163] [164] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13623--13623 [][] [165] Overfull \hbox (101.17207pt too wide) in paragraph at lines 13649--13649 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13660--13660 [][] [166] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13707--13707 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 13707--13707 [][] [167] [168] [169] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13958--13958 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc foo.nc[] [170] [171] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14098--14098 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [172] [173] Underfull \hbox (badness 10000) in paragraph at lines 14224--14233 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 14243--14243 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14285--14285 [][] [174] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14285--14285 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14285--14285 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14285--14285 [][] [175] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14376--14376 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14401--14401 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [176] [177] [178] [179] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14603--14603 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] [180] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14620--14620 [] @texttt 4. 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(72.42863pt too wide) in paragraph at lines 15086--15086 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [187] [188] [189] [190] Overfull \hbox (12.86244pt too wide) in paragraph at lines 15370--15371 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 15378--15379 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 15382--15383 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 15386--15387 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 15390--15391 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 15406--15407 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 15411--15412 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 15429--15429 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 15430--15430 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 15437--15437 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 15462--15463 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 15541--15542 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 15542--15543 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 15543--15544 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 15544--15544 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 15544--15545 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 15553--15554 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 15562--15563 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 15563--15563 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 15565--15566 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 15566--15566 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 15627--15627 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [191] [192] [193] [194] [195] [196] [197] [198] Underfull \hbox (badness 10000) in paragraph at lines 15701--15703 []@texttt status=@textbf gsl[]fit[]linear Underfull \hbox (badness 10000) in paragraph at lines 15714--15715 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ [199] Underfull \hbox (badness 10000) in paragraph at lines 15732--15733 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ Overfull \hbox (14.94176pt too wide) in paragraph at lines 15758--15758 [][] Overfull \hbox (158.65895pt too wide) in paragraph at lines 15786--15786 [][] [200] Overfull \hbox (118.41814pt too wide) in paragraph at lines 15786--15786 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 15786--15786 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 15803--15803 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 15804--15804 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15805--15805 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 15812--15812 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 15813--15813 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 15814--15814 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [201] [202] Overfull \hbox (175.90501pt too wide) in paragraph at lines 15920--15920 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15922--15922 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [203] [204] [205] [206] [207] Underfull \hbox (badness 10000) in paragraph at lines 16445--16461 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 16505--16521 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 16591--16601 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [208] [209] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16803--16803 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16803--16803 [][] [210] [211] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16881--16881 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16887--16887 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] Overfull \hbox (60.93126pt too wide) in paragraph at lines 17989--17989 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [225] [226] [227] [228] [229] [230] [231] Overfull \hbox (38.26584pt too wide) in paragraph at lines 18688--18688 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 18689--18689 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [232] [233] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18889--18889 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18891--18891 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [234] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18957--18957 [][] [235] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19002--19002 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [236] [237] Underfull \hbox (badness 10000) in paragraph at lines 19176--19176 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - Underfull \hbox (badness 10000) in paragraph at lines 19177--19177 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 19207--19207 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] [238] Overfull \hbox (72.42863pt too wide) in paragraph at lines 19213--19213 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 19214--19214 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19251--19251 [][] [239] [240] Overfull \hbox (49.43388pt too wide) in paragraph at lines 19353--19353 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19360--19360 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 19362--19362 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [241] Overfull \hbox (55.18257pt too wide) in paragraph at lines 19430--19430 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19436--19436 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19463--19463 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19463--19463 [][] [242] [243] [244] Overfull \hbox (55.18257pt too wide) in paragraph at lines 19690--19690 [][] [245] [246] [247] [248] Overfull \hbox (20.69044pt too wide) in paragraph at lines 20007--20007 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 20008--20008 []@texttt [-O] [-o @textttsl output- [249] [250] [251] [252] [253] Overfull \hbox (43.6852pt too wide) in paragraph at lines 20480--20480 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [254] [255] [256] Overfull \hbox (32.51715pt too wide) in paragraph at lines 20734--20734 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 20735--20735 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 20738--20738 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 20739--20739 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [257] [258] Overfull \hbox (72.75797pt too wide) in paragraph at lines 20921--20921 [][] Overfull \hbox (135.99353pt too wide) in paragraph at lines 20921--20921 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 20921--20921 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 20921--20921 [][] [259] Overfull \hbox (204.97778pt too wide) in paragraph at lines 20976--20976 [][] Overfull \hbox (130.24484pt too wide) in paragraph at lines 20976--20976 [][] Overfull \hbox (181.98303pt too wide) in paragraph at lines 20976--20976 [][] Overfull \hbox (181.98303pt too wide) in paragraph at lines 20976--20976 [][] Overfull \hbox (84.25534pt too wide) in paragraph at lines 20976--20976 [][] Overfull \hbox (38.26584pt 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21338--21338 []@texttt /usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local build s)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 21339--21339 []@texttt /usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 21340--21340 []@texttt /usr/bin/h4_ncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Ana conda)[] Overfull \hbox (124.49615pt too wide) in paragraph at lines 21341--21341 []@texttt /usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Deb ian packages?)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 21342--21342 []@texttt hdp dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 21343--21343 []@texttt h4_ncdump dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] [265] Overfull \hbox (61.26059pt too wide) in paragraph at lines 21423--21423 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out .nc[] [266] [267] Overfull \hbox (549.89905pt too wide) in paragraph at lines 21536--21536 [][] Overfull \hbox (463.66873pt too wide) in paragraph at lines 21536--21536 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 21566--21566 [][] Overfull \hbox (94.43918pt too wide) in paragraph at lines 21566--21566 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 21566--21566 [][] [268] Overfull \hbox (123.18262pt too wide) in paragraph at lines 21631--21631 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 21631--21631 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 21631--21631 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 21631--21631 [][] [269] Overfull \hbox (123.18262pt too wide) in paragraph at lines 21670--21670 [][] Overfull \hbox (111.68524pt too wide) in paragraph at lines 21670--21670 [][] Overfull \hbox (232.40768pt too wide) in paragraph at lines 21670--21670 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 21670--21670 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 21670--21670 [][] [270] Overfull \hbox (78.50665pt too wide) in paragraph at lines 21835--21835 [][] [271] Overfull \hbox (95.75272pt too wide) in paragraph at lines 21917--21917 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0. 123456789[] Overfull \hbox (193.48041pt too wide) in paragraph at lines 21920--21920 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567, 0.12345678, 0.123456789 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 21925--21925 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0 .123 ;[] [272] Overfull \hbox (78.50665pt too wide) in paragraph at lines 22009--22009 [][] Overfull \hbox (147.4909pt too wide) in paragraph at lines 22052--22052 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 22052--22052 [][] [273] Underfull \hbox (badness 10000) in paragraph at lines 22067--22082 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 22100--22100 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 22100--22100 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 22100--22100 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 22100--22100 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22172--22172 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] [274] Overfull \hbox (129.91551pt too wide) in paragraph at lines 22185--22185 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 22193--22193 [][] Overfull \hbox (262.13533pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 22291--22291 [][] [275] Overfull \hbox (256.38664pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (170.15633pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (256.38664pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (371.3604pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 22291--22291 [][] Overfull \hbox (377.10909pt too wide) in paragraph at lines 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paragraph at lines 22371--22371 []@texttt # Change values to be sure original values are not copied in followi ng step[] [277] [278] [279] Overfull \hbox (32.18784pt too wide) in paragraph at lines 22591--22591 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [- v @textttsl var@texttt [,[]]] [-X ...] [-x][] [280] [281] Underfull \hbox (badness 10000) in paragraph at lines 22785--22790 []@textsl pck[]map[] @textrm key val-ues: `@texttt dbl_flt[]@textrm '[], `@tex ttt pck_map_dbl_flt[]@textrm '[], `@texttt dbl_sgl[]@textrm '[], [282] Underfull \hbox (badness 10000) in paragraph at lines 22791--22797 []@textsl pck[]map[] @textrm key val-ues: `@texttt flt_dbl[]@textrm '[], `@tex ttt pck_map_flt_dbl[]@textrm '[], `@texttt sgl_dbl[]@textrm '[], [283] [284] [285] [286] [287] Overfull \hbox (55.18257pt too wide) in paragraph at lines 23172--23172 []@texttt ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 23185--23185 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim ension[] [288] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23234--23234 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 23239--23239 []@texttt [-O] [-o @textttsl output- Overfull \hbox (37.93651pt too wide) in paragraph at lines 23239--23239 @textttsl file@texttt ] [-p @textttsl path@texttt ] [--ppc ...] [-R] [-r] [--r am_all] [--rec_apn] [--rth_dbl|flt][] [289] [290] [291] [292] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23484--23484 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 23489--23489 []@texttt [-O] [-o @textttsl output- [293] [294] Overfull \hbox (72.42863pt too wide) in paragraph at lines 23620--23620 []@texttt [--dt_sng=@textttsl dt_sng@texttt ] [--esmf_nsp=@textttsl esmf_nsp@t exttt ] [--esmf_typ=@textttsl esmf_typ@texttt ] [--esmf_xpn=@textttsl esmf_xpn@ texttt ][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 23624--23624 []@texttt [--msk_dst=@textttsl msk_dst@texttt ] [--msk_out=@textttsl msk_out@t exttt ] [--msk_src=@textttsl msk_src@texttt ] [--mss_val=@textttsl mss_val@text tt ][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23628--23628 []@texttt [--preserve=@textttsl prs_stt@texttt ] [-R @textttsl rgr_opt@texttt ] [--rgn_dst] [--rgn_src] [--rnr_thr=@textttsl rnr_thr@texttt ][] [295] [296] Underfull \hbox (badness 6741) in paragraph at lines 23875--23886 @texttt lonCell[]@textrm , @texttt lonEdge[]@textrm , @texttt lonVertex[]@textr m , @texttt maxLevelEdgeTop[]@textrm , @texttt meshDensity[]@textrm , @texttt n EdgesOnCell[]@textrm , [297] Underfull \hbox (badness 10000) in paragraph at lines 24094--24095 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv --mono Underfull \hbox (badness 10000) in paragraph at lines 24096--24100 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv [298] Underfull \hbox (badness 10000) in paragraph at lines 24101--24102 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 24105--24106 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv --mono3 Underfull \hbox (badness 10000) in paragraph at lines 24111--24112 []@textrm Options: `@texttt --in_type fv --in_np 2 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 24115--24116 []@textrm Options: `@texttt --in_type fv --in_np 2 --out_type fv [299] [300] [301] [302] [303] Overfull \hbox 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[332] Overfull \hbox (216.14583pt too wide) in paragraph at lines 27038--27038 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 27057--27057 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 27057--27057 [][] Overfull \hbox (106.92076pt too wide) in paragraph at lines 27057--27057 [][] [333] [334] Overfull \hbox (49.4339pt too wide) in paragraph at lines 27132--27132 []@texttt ncwa [-3] [-4] [-5] [-6] [-7] [-A] [-a @textttsl dim@texttt [,[]]] [ -B @textttsl mask_cond@texttt ] [-b] [-C] [-c][] Overfull \hbox (20.69046pt too wide) in paragraph at lines 27136--27136 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl b ...] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss] [-I][] Underfull \hbox (badness 10000) in paragraph at lines 27139--27139 []@texttt [-O] [-o @textttsl output- [335] [336] [337] [338] Chapter 5 [339] [340] [341] [342] [343] Chapter 6 [344] [345] Chapter 7 [346] (/builddir/build/BUILD/nco-4.9.3/doc/xmp/cmb_fl.sh 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[][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 49--49 [][][] [354]) [355] [356] (/builddir/build/BUILD/nco-4.9.3/doc/xmp/ann_avg.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16--16 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 19--19 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 21--21 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 28--28 [][] [357] Overfull \hbox (43.6852pt too wide) in paragraph at lines 42--42 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 47--47 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 48--48 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 63--63 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 71--71 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 85--85 [][] [358] Overfull \hbox (43.6852pt too wide) in paragraph at lines 93--93 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 97--97 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 105--105 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 114--114 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 122--122 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 127--127 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 129--129 [][] [359] Overfull \hbox (20.69044pt too wide) in paragraph at lines 138--138 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/gsl_rgr.nco Overfull \hbox (26.43913pt too wide) in paragraph at lines 5--5 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21--21 [][] [360]) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/ann_avg_grp.sh Overfull \hbox (20.69044pt too wide) in paragraph at lines 12--12 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15--15 [][] [361]) [362] (/builddir/build/BUILD/nco-4.9.3/doc/xmp/mcc.sh Overfull \hbox (20.69044pt too wide) in paragraph at lines 20--20 [][][][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21--21 [][][] [363] Overfull \hbox (72.42863pt too wide) in paragraph at lines 41--41 [][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 48--48 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 49--49 [][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 51--51 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 52--52 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 61--61 [][][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 63--63 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 68--68 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 71--71 [][] [364] Overfull \hbox (43.6852pt too wide) in paragraph at lines 76--76 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 77--77 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/mcc_grp.sh [365]) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/rgr.sh [366] Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 6--6 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10--10 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 27--27 [][][][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 28--28 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 33--33 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 37--37 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/bi_interp.nco [367] Overfull \hbox (14.94176pt too wide) in paragraph at lines 34--34 [][][][] [368] Overfull \hbox (20.69044pt too wide) in paragraph at lines 61--61 [][][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/add_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 5--5 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 6--6 [][][][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 8--8 [][][] [369] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-4.9.3/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [370] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [371] [372] Overfull \hbox (60.93126pt too wide) in paragraph at lines 28461--28461 [][] Chapter 9 [373] [374] Overfull \hbox (14.94176pt too wide) in paragraph at lines 28771--28771 [][] [375] [376] [377] [378] Overfull \hbox (37.93651pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 28771--28771 [][] [379] Overfull \hbox (693.28691pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 28771--28771 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 28771--28771 [][] [380] Chapter 10 [381] [382] (General Index) [383] [384] (./nco.cps [385] [386] [387] [388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] [404]) [405] [406] ) (see the transcript file for additional information) Output written on nco.pdf (414 pages, 1739418 bytes). Transcript written on nco.log. make: Leaving directory '/builddir/build/BUILD/nco-4.9.3/doc' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1OfAyK + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64 ++ dirname /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64 + cd nco-4.9.3 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64 'INSTALL=/usr/bin/install -p' Making install in data make[1]: Entering directory '/builddir/build/BUILD/nco-4.9.3/data' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/data' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin' /usr/bin/install -p ncclimo ncremap '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/data' make[1]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/data' Making install in src make[1]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src' Making install in nco make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -p libnco.la '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64' libtool: install: /usr/bin/install -p .libs/libnco-4.9.3.so /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco-4.9.3.so libtool: install: (cd /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64 && { ln -s -f libnco-4.9.3.so libnco.so || { rm -f libnco.so && ln -s libnco-4.9.3.so libnco.so; }; }) libtool: install: /usr/bin/install -p .libs/libnco.lai /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco.la libtool: install: /usr/bin/install -p .libs/libnco.a /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco.a libtool: install: chmod 644 /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco.a libtool: install: ranlib /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco.a libtool: install: warning: remember to run `libtool --finish /usr/lib64' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -p ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin' libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncatted /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncatted libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncbo /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncbo libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncecat /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncecat libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncflint /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncflint libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncks /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncks libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncpdq /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncpdq libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncra /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncra libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncrename /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncrename libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncwa /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncwa /usr/bin/make install-exec-hook make[4]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco' cd /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) cd /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) cd /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) cd /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) make[4]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco' Making install in nco_c++ make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco_c++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco_c++' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -p libnco_c++.la '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64' libtool: install: /usr/bin/install -p .libs/libnco_c++-4.9.3.so /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco_c++-4.9.3.so libtool: install: (cd /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64 && { ln -s -f libnco_c++-4.9.3.so libnco_c++.so || { rm -f libnco_c++.so && ln -s libnco_c++-4.9.3.so libnco_c++.so; }; }) libtool: install: /usr/bin/install -p .libs/libnco_c++.lai /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco_c++.la libtool: install: /usr/bin/install -p .libs/libnco_c++.a /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco_c++.a libtool: install: chmod 644 /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco_c++.a libtool: install: ranlib /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco_c++.a libtool: install: warning: remember to run `libtool --finish /usr/lib64' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/include/nco' /usr/bin/install -p -m 644 libnco_c++.hh nco_dmn.hh nco_hgh.hh nco_var.hh nco_att.hh nco_fl.hh nco_utl.hh '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/include/nco' make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco_c++' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco_c++' Making install in nco++ make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -p ncap2 '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin' libtool: install: warning: `../nco/libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncap2 /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncap2 make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src/nco++' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src' make[3]: Entering directory '/builddir/build/BUILD/nco-4.9.3/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src' make[1]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/src' Making install in man make[1]: Entering directory '/builddir/build/BUILD/nco-4.9.3/man' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/man' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/man/man1' /usr/bin/install -p -m 644 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncremap.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1 '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/man/man1' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/man' make[1]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/man' Making install in doc make[1]: Entering directory '/builddir/build/BUILD/nco-4.9.3/doc' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3/doc' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/info' /usr/bin/install -p -m 644 ./nco.info ./nco.info-1 ./nco.info-2 ./nco.info-3 ./nco.info-4 '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/info' install-info --info-dir='/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/info' '/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/info/nco.info' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/doc' make[1]: Leaving directory '/builddir/build/BUILD/nco-4.9.3/doc' make[1]: Entering directory '/builddir/build/BUILD/nco-4.9.3' make[2]: Entering directory '/builddir/build/BUILD/nco-4.9.3' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/nco-4.9.3' make[1]: Leaving directory '/builddir/build/BUILD/nco-4.9.3' + rm /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco.la /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco_c++.la + rm -f /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/info/dir + chrpath -d -k /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncap2 /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncatted /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncbo /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncclimo /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncdiff /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncea /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncecat /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/nces /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncflint /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncks /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncpdq /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncra /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncrcat /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncremap /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncrename /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncwa `/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncclimo' probably isn't an ELF file. elf_open: Exec format error `/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncremap' probably isn't an ELF file. elf_open: Exec format error + : + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 4.9.3-1.fc33 --unique-debug-suffix -4.9.3-1.fc33.riscv64 --unique-debug-src-base nco-4.9.3-1.fc33.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/nco-4.9.3 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncatted explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncap2 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncbo explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncecat extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncap2 extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncatted extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncbo extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncecat explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncflint extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncflint explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncks explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncpdq extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncks extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncpdq explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncra extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncra explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncwa explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncrename extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncwa extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/bin/ncrename explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco-4.9.3.so extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco-4.9.3.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco_c++-4.9.3.so extracting debug info from /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/lib64/libnco_c++-4.9.3.so original debug info size: 19080kB, size after compression: 17460kB /usr/lib/rpm/sepdebugcrcfix: Updated 12 CRC32s, 0 CRC32s did match. cpio: src/nco/ncap_yacc.h: Cannot stat: No such file or directory cpio: src/nco/ncap_yacc.y: Cannot stat: No such file or directory 11704 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/ncclimo from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/ncremap from /bin/bash to #!/usr/bin/bash Processing files: nco-4.9.3-1.fc33.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.eA1sWK + umask 022 + cd /builddir/build/BUILD + cd nco-4.9.3 + DOCDIR=/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + cp -pr README README.md /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + cp -pr doc/rtfm.txt /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + cp -pr doc/nco.html /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + cp -pr doc/nco.pdf /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + cp -pr doc/nco.css /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + cp -pr doc/index.shtml /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + cp -pr doc/TODO /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + cp -pr doc/ChangeLog /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + cp -pr doc/nco.png /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + cp -pr doc/nco_news.shtml /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + cp -pr doc/nsf.png /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/doc/nco + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.iTh9kN + umask 022 + cd /builddir/build/BUILD + cd nco-4.9.3 + LICENSEDIR=/builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/licenses/nco + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/licenses/nco + cp -pr doc/LICENSE /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64/usr/share/licenses/nco + RPM_EC=0 ++ jobs -p + exit 0 Provides: libnco-4.9.3.so()(64bit) libnco_c++-4.9.3.so()(64bit) nco = 4.9.3-1.fc33 nco(riscv-64) = 4.9.3-1.fc33 Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: /usr/bin/bash ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcurl.so.4()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.23()(64bit) libgslcblas.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libnco-4.9.3.so()(64bit) libnetcdf.so.15()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libudunits2.so.0()(64bit) rtld(GNU_HASH) Processing files: nco-devel-4.9.3-1.fc33.riscv64 Provides: nco-devel = 4.9.3-1.fc33 nco-devel(riscv-64) = 4.9.3-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-static-4.9.3-1.fc33.riscv64 Provides: nco-static = 4.9.3-1.fc33 nco-static(riscv-64) = 4.9.3-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-debugsource-4.9.3-1.fc33.riscv64 Provides: nco-debugsource = 4.9.3-1.fc33 nco-debugsource(riscv-64) = 4.9.3-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-debuginfo-4.9.3-1.fc33.riscv64 Provides: debuginfo(build-id) = 125084faf17e7ecbf21c333b6d568670a2ad946c debuginfo(build-id) = 12682a369d1a854d81f7034a3f45df466c91f788 debuginfo(build-id) = 20ea77fcb5a27f0d3704b00149322602c9942c86 debuginfo(build-id) = 2f23d0ec5643e6f0b66764ec1cc3d823373871a0 debuginfo(build-id) = 2fa1b72e74807c3f39da3edf8f4ff7af39576799 debuginfo(build-id) = 42eb8a635033f455d452a62a47802e7d5d501a19 debuginfo(build-id) = 44c155781c27ba3bec4a26054000e733251eb5e1 debuginfo(build-id) = 617dd4260de808aa909d99f426cefbe4a9ceabaa debuginfo(build-id) = 658340023ce8e75432f100a56c353b1d76f16fb3 debuginfo(build-id) = 70cb3fc16898d33e675fce9e3002d511b669bec3 debuginfo(build-id) = 9fea3131aaa8055a0e5b0d79f2ae1337689eeb0f debuginfo(build-id) = afdb5c23f5a487f05f4df13bd5b9b1d33ac11ab2 nco-debuginfo = 4.9.3-1.fc33 nco-debuginfo(riscv-64) = 4.9.3-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: nco-debugsource(riscv-64) = 4.9.3-1.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64 Wrote: /builddir/build/RPMS/nco-4.9.3-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/nco-devel-4.9.3-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/nco-debugsource-4.9.3-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/nco-static-4.9.3-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/nco-debuginfo-4.9.3-1.fc33.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.g9P6DL + umask 022 + cd /builddir/build/BUILD + cd nco-4.9.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/nco-4.9.3-1.fc33.riscv64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0