Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/f29-build-12233-5619/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/nco-4.7.4-1.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/f29-build-12233-5619/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/nco.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.duUq4Z + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf nco-4.7.4 + /usr/bin/gzip -dc /builddir/build/SOURCES/nco-4.7.4.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd nco-4.7.4 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (nco-install_C_headers.patch):' Patch #0 (nco-install_C_headers.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .install_C_headers --fuzz=0 patching file src/nco/Makefile.in + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.z8jfX6 + umask 022 + cd /builddir/build/BUILD + cd nco-4.7.4 + export 'CPPFLAGS=-I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H' + CPPFLAGS='-I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H' + export 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./autobld/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./autobld/config.sub BUILDSTDERR: ++ basename ./autobld/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./autobld/config.sub '/usr/lib/rpm/redhat/config.sub' -> './autobld/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./autobld/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./autobld/config.guess BUILDSTDERR: ++ basename ./autobld/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./autobld/config.guess '/usr/lib/rpm/redhat/config.guess' -> './autobld/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./autobld/ltmain.sh + ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info HAVE_ANTLR=yes --disable-dependency-tracking --includedir=/usr/include/nco --enable-netcdf4 checking build system type... riscv64-koji-linux-gnu checking host system type... riscv64-koji-linux-gnu checking target system type... riscv64-koji-linux-gnu BUILDSTDERR: ./configure: line 2995: git: command not found checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for riscv64-koji-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for riscv64-koji-linux-gnu-g++... no checking for riscv64-koji-linux-gnu-c++... no checking for riscv64-koji-linux-gnu-gpp... no checking for riscv64-koji-linux-gnu-aCC... no checking for riscv64-koji-linux-gnu-CC... no checking for riscv64-koji-linux-gnu-cxx... no checking for riscv64-koji-linux-gnu-cc++... no checking for riscv64-koji-linux-gnu-cl.exe... no checking for riscv64-koji-linux-gnu-FCC... no checking for riscv64-koji-linux-gnu-KCC... no checking for riscv64-koji-linux-gnu-RCC... no checking for riscv64-koji-linux-gnu-xlC_r... no checking for riscv64-koji-linux-gnu-xlC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for flex... flex checking lex output file root... lex.yy checking lex library... none needed checking whether yytext is a pointer... no checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert riscv64-koji-linux-gnu file names to riscv64-koji-linux-gnu format... func_convert_file_noop checking how to convert riscv64-koji-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for riscv64-koji-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for riscv64-koji-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for riscv64-koji-linux-gnu-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for riscv64-koji-linux-gnu-strip... no checking for strip... strip checking for riscv64-koji-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for riscv64-koji-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for working strtod... yes checking for canonicalize_file_name... yes checking for floor... no checking for gethostname... yes checking for getpagesize... yes checking for getrusage... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkstemp... yes checking for pow... no checking for readlink... yes checking for realpath... yes checking for regcomp... yes checking for setlocale... yes checking for sqrt... no checking for strchr... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for ANSI C header files... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking cstdlib usability... yes checking cstdlib presence... yes checking for cstdlib... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for ptrdiff_t... yes checking size of int*... 8 checking whether C++ compiler implements namespaces... yes checking whether C++ compiler has working valarray... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no ################################# # Test for netCDF # ################################ checking for /opt/local/include/netcdf.h... no checking for /opt/local/lib/libnetcdf.a... no checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for nc_open in -lnetcdf... yes ################################# # Test for netCDF4 support # ################################# checking whether NC_CHUNKED is declared... yes configure: netcdf.h contains netCDF4 definitions checking for nc_def_var_chunking in -lnetcdf... yes configure: Good news: Simple program compiles and links to netCDF4 library checking netcdf_mem.h usability... yes checking netcdf_mem.h presence... yes checking for netcdf_mem.h... yes checking for gcc option to support OpenMP... -fopenmp configure: OpenMP support enabled Beginning generic tests for DAP support Testing for DAP-netCDF support (is DAP in libnetcdf.a?)... checking for daperror in -lnetcdf... yes configure: DAP support enabled checking for getopt_long... yes checking for _g95_ac_array in -lf95... no checking for sin in -lm... yes checking for sinf in -lsunmath... no checking for gettext in -lintl... no checking for res_init in -lresolv... no checking for main in -lsocket... no checking for main in -lthread... no checking for nco_open in -lnco... no checking for nc_inq_format... yes checking for nc_inq_path... yes checking for nc_set_log_level... no checking for getopt... yes checking for getopt_long... (cached) yes checking for atan2... yes checking for acosf... yes checking for asinf... yes checking for atanf... yes checking for atan2f... yes checking for cosf... yes checking for expf... yes checking for fabsf... yes checking for fmodf... yes checking for log10f... yes checking for logf... yes checking for powf... yes checking for sinf... yes checking for sqrtf... yes checking for tanf... yes checking for erff... yes checking for erfcf... yes checking for gammaf... yes checking for acoshf... yes checking for asinhf... yes checking for atanhf... yes checking for coshf... yes checking for sinhf... yes checking for tanhf... yes checking for ceilf... yes checking for floorf... yes checking for nearbyint... yes checking for rint... yes checking for round... yes checking for trunc... yes checking for nearbyintf... yes checking for rintf... yes checking for roundf... yes checking for truncf... yes checking for getopt_long... (cached) yes checking for strdup... yes checking for strcasecmp... yes checking for strsep... yes checking for strcasestr... yes ########################################################## # Sorting out MacOSX build parameters # ########################################################## ################################# # Testing for ANTLR support # ################################# checking for runantlr... yes configure: antlr library was found checking antlr/CommonToken.hpp usability... yes checking antlr/CommonToken.hpp presence... yes checking for antlr/CommonToken.hpp... yes INFO: ANTLR development support found---will build nco++ directory and ncap2 ################################################## # Testing for ESMF support (only for developers) # ################################################## ######################################## # Testing for GSL support # ######################################## configure: These GSL library and header tests must succeed for GSL support: checking for gsl_sf_gamma_inc in -lgsl... yes checking for /usr/include/gsl/gsl_sf_gamma.h... yes configure: GSL support enabled checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking for sys/types.h... (cached) yes checking for regexec... yes checking for regcomp... (cached) yes checking for regfree... yes ######################################## # Testing for UDUNITS support # ######################################## WARNING: Requested both UDUnits and UDUnits2 support---overriding UDUnits Will attempt to build NCO with UDUnits support from libudunits2, not from libudunits checking for XML_ParserCreate in -lexpat... no checking for /usr/include/udunits2/udunits2.h... yes checking for /usr/include/udunits2.h... no checking for /usr/lib/x86_64-linux-gnu/libudunits2.a... no checking for /usr/lib/i386-linux-gnu/libudunits2.a... no checking for /opt/local/include/udunits2/udunits2.h... no checking for /opt/local/lib/libudunits2.a... no checking for /usr/share/udunits/udunits2.xml... yes configure: NB: Following tests of UDUnits2 library and header must succeed for UDUnits2 support: checking for ut_read_xml in -ludunits2... yes checking udunits2.h usability... yes checking udunits2.h presence... yes checking for udunits2.h... yes configure: UDUnits2 support enabled checking for ncgen... /usr/bin/ncgen configure: Creating sample netCDF data files for self-tests ############################### # Require Shared Libs? # ############################### checking for makeinfo... yes MAKEINFO_VERSION=6.5 configure: Documentation support enabled checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/nco/Makefile config.status: creating man/Makefile config.status: creating src/nco_c++/Makefile config.status: creating src/nco++/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Parameters: AR_FLAGS............. cru CC................... gcc CFLAGS............... -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE CPP.................. gcc -E CPPFLAGS............. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 CXX.................. g++ CXXFLAGS............. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC ENABLE_DAP........... yes ENABLE_ESMF...........no ENABLE_GSL........... yes ENABLE_LOGGING....... ENABLE_NETCDF4....... yes ENABLE_OPENMP........ yes ENABLE_UDUNITS....... no ENABLE_UDUNITS2...... yes GSL_ROOT............. /usr HAVE_ANTLR........... yes HAVE_MAKEINFO........ yes HAVE_NETCDF4_H....... yes HOST................. HOSTNAME............. LDFLAGS.............. -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld LIBS................. -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 NETCDF_ROOT.......... /usr OPENMP_CFLAGS........ -fopenmp host................. riscv64-koji-linux-gnu install prefix ...... /usr ******************************************************************* Configuration complete. You are now ready to run 'make'. Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). If the build fails, please examine the file 'configure.eg' in the top-level NCO directory. It contains examples known to build NCO for various platforms and compilers. ******************************************************************* + make -j4 make all-recursive make[1]: Entering directory '/builddir/build/BUILD/nco-4.7.4' Making all in data make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4/data' /usr/bin/ncgen -o big.nc big.cdl /usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl /builddir/build/BUILD/nco-4.7.4/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc /usr/bin/ncgen -k netCDF-4 -o in_4.nc in.cdl BUILDSTDERR: make[2]: /builddir/build/BUILD/nco-4.7.4/src/nco/ncks: Command not found BUILDSTDERR: make[2]: [Makefile:581: in_4c.nc] Error 127 (ignored) /usr/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl /usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl /usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl /usr/bin/ncgen -k netCDF-4 -o split.nc split.cdl /usr/bin/ncgen -k netCDF-4 -o ref_utf8.nc ref_utf8.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/data' Making all in src make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src' Making all in nco make[3]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncatted.o ncatted.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_att_utl.lo nco_att_utl.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_aux.lo nco_aux.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_bnr.lo nco_bnr.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from ncatted.c:104: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_aux.c -fPIC -DPIC -o .libs/nco_aux.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_att_utl.c -fPIC -DPIC -o .libs/nco_att_utl.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_bnr.h:17, BUILDSTDERR: from nco_bnr.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_aux.h:17, BUILDSTDERR: from nco_aux.c:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_att_utl.h:21, BUILDSTDERR: from nco_att_utl.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -o nco_bnr.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cln_utl.lo nco_cln_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_aux.c -o nco_aux.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cln_utl.c -fPIC -DPIC -o .libs/nco_cln_utl.o BUILDSTDERR: In file included from /usr/include/ctype.h:25, BUILDSTDERR: from nco_cln_utl.h:21, BUILDSTDERR: from nco_cln_utl.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_dmn.lo nco_cnf_dmn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_dmn.c -fPIC -DPIC -o .libs/nco_cnf_dmn.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_cnf_dmn.h:17, BUILDSTDERR: from nco_cnf_dmn.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_typ.lo nco_cnf_typ.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_typ.c -fPIC -DPIC -o .libs/nco_cnf_typ.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_cnf_typ.h:17, BUILDSTDERR: from nco_cnf_typ.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: nco_cln_utl.c: In function 'nco_cln_var_prs': BUILDSTDERR: nco_cln_utl.c:1162:27: warning: 'mss_val_flt' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if(var->has_mss_val && var->val.fp[idx]==mss_val_flt ){ BUILDSTDERR: ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: nco_cln_utl.c:1138:27: warning: 'mss_val_dbl' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if(var->has_mss_val && var->val.dp[idx]==mss_val_dbl) { BUILDSTDERR: ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cln_utl.c -o nco_cln_utl.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_dmn.c -o nco_cnf_dmn.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_att_utl.c -o nco_att_utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnk.lo nco_cnk.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_arm.lo nco_cnv_arm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_cnk.h:17, BUILDSTDERR: from nco_cnk.c:45: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_cnv_arm.h:17, BUILDSTDERR: from nco_cnv_arm.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_arm.c -o nco_cnv_arm.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_typ.c -o nco_cnf_typ.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_csm.lo nco_cnv_csm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_csm.c -fPIC -DPIC -o .libs/nco_cnv_csm.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_cnv_csm.h:17, BUILDSTDERR: from nco_cnv_csm.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ctl.lo nco_ctl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_ctl.h:21, BUILDSTDERR: from nco_ctl.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnk.c -o nco_cnk.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_csm.c -o nco_cnv_csm.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ctl.c -o nco_ctl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dbg.lo nco_dbg.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dmn_utl.lo nco_dmn_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dbg.c -fPIC -DPIC -o .libs/nco_dbg.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_dbg.h:17, BUILDSTDERR: from nco_dbg.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dmn_utl.c -fPIC -DPIC -o .libs/nco_dmn_utl.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_dmn_utl.h:21, BUILDSTDERR: from nco_dmn_utl.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dbg.c -o nco_dbg.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_fl_utl.lo nco_fl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_fl_utl.c -fPIC -DPIC -o .libs/nco_fl_utl.o BUILDSTDERR: In file included from /usr/include/errno.h:25, BUILDSTDERR: from nco_fl_utl.h:21, BUILDSTDERR: from nco_fl_utl.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_utl.lo nco_grp_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_utl.c -fPIC -DPIC -o .libs/nco_grp_utl.o BUILDSTDERR: In file included from /usr/include/assert.h:35, BUILDSTDERR: from nco_grp_utl.h:21, BUILDSTDERR: from nco_grp_utl.c:19: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_trv.lo nco_grp_trv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_trv.c -fPIC -DPIC -o .libs/nco_grp_trv.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_grp_trv.h:21, BUILDSTDERR: from nco_grp_trv.c:14: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dmn_utl.c -o nco_dmn_utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lmt.lo nco_lmt.c BUILDSTDERR: nco_fl_utl.c: In function 'nco_fl_nm_prs': BUILDSTDERR: nco_fl_utl.c:1369:38: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] BUILDSTDERR: (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); BUILDSTDERR: ^~ BUILDSTDERR: nco_fl_utl.c:1369:34: note: directive argument in the range [-2147483648, 2147483645] BUILDSTDERR: (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); BUILDSTDERR: ^~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from nco_fl_utl.h:23, BUILDSTDERR: from nco_fl_utl.c:10: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 10 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lmt.c -fPIC -DPIC -o .libs/nco_lmt.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_lmt.h:21, BUILDSTDERR: from nco_lmt.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_fl_utl.c -o nco_fl_utl.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_trv.c -o nco_grp_trv.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lst_utl.lo nco_lst_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lst_utl.c -fPIC -DPIC -o .libs/nco_lst_utl.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_lst_utl.h:21, BUILDSTDERR: from nco_lst_utl.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lmt.c -o nco_lmt.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_map.lo nco_map.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_map.c -fPIC -DPIC -o .libs/nco_map.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from nco_map.h:17, BUILDSTDERR: from nco_map.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: nco_lst_utl.c: In function 'nco_fmt_sng_printf_subst': BUILDSTDERR: nco_lst_utl.c:38:23: warning: unknown escape sequence: '\.' BUILDSTDERR: const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */ BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: nco_map.c: In function 'nco_map_mk': BUILDSTDERR: nco_map.c:398:9: warning: variable 'fl_out_tmp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: char *fl_out_tmp=NULL_CEWI; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: nco_map.c:274:12: warning: variable 'flg_grd_out_rct' set but not used [-Wunused-but-set-variable] BUILDSTDERR: nco_bool flg_grd_out_rct=False; /* [flg] Rectangular coordinates */ BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: nco_map.c:272:12: warning: variable 'flg_grd_in_rct' set but not used [-Wunused-but-set-variable] BUILDSTDERR: nco_bool flg_grd_in_rct=False; /* [flg] Rectangular coordinates */ BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: nco_map.c:208:7: warning: variable 'bnd_nbr_out' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int bnd_nbr_out; /* [nbr] Number of vertices for destination grid coordinates */ BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: nco_map.c:190:8: warning: variable 'col_nbr_in' set but not used [-Wunused-but-set-variable] BUILDSTDERR: long col_nbr_in; /* [idx] Number of columns in source grid */ BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: nco_map.c:189:7: warning: variable 'bnd_nbr_in' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int bnd_nbr_in; /* [nbr] Number of vertices for source grid coordinates */ BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: nco_map.c:27:16: warning: unused variable 'eps_rlt' [-Wunused-variable] BUILDSTDERR: const double eps_rlt=1.0e-14; /* [frc] Round-off error tolerance */ BUILDSTDERR: ^~~~~~~ BUILDSTDERR: nco_map.c:26:16: warning: unused variable 'dgr2rdn' [-Wunused-variable] BUILDSTDERR: const double dgr2rdn=M_PI/180.0; BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lst_utl.c -o nco_lst_utl.o >/dev/null 2>&1 BUILDSTDERR: nco_map.c:367:8: warning: 'lon_nbr_out' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if(idx%lon_nbr_out == 0) idx_tst=idx; BUILDSTDERR: ~~~^~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_map.c -o nco_map.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_md5.lo nco_md5.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_md5.h:22, BUILDSTDERR: from nco_md5.c:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mmr.lo nco_mmr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o BUILDSTDERR: In file included from /usr/include/errno.h:25, BUILDSTDERR: from nco_mmr.h:21, BUILDSTDERR: from nco_mmr.c:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_md5.c -o nco_md5.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_msa.lo nco_msa.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_msa.h:21, BUILDSTDERR: from nco_msa.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mmr.c -o nco_mmr.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mss_val.lo nco_mss_val.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_mss_val.h:21, BUILDSTDERR: from nco_mss_val.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mta.lo nco_mta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mta.c -fPIC -DPIC -o .libs/nco_mta.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_mta.h:21, BUILDSTDERR: from nco_mta.c:12: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mss_val.c -o nco_mss_val.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mta.c -o nco_mta.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_msa.c -o nco_msa.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_netcdf.lo nco_netcdf.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_omp.lo nco_omp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o BUILDSTDERR: In file included from /usr/include/ctype.h:25, BUILDSTDERR: from nco_netcdf.h:43, BUILDSTDERR: from nco_netcdf.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_omp.h:17, BUILDSTDERR: from nco_omp.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_omp.c -o nco_omp.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_pck.lo nco_pck.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_pck.h:17, BUILDSTDERR: from nco_pck.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_utl.c -o nco_grp_utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ppc.lo nco_ppc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o BUILDSTDERR: In file included from /usr/include/ctype.h:25, BUILDSTDERR: from nco_ppc.h:17, BUILDSTDERR: from nco_ppc.c:13: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_netcdf.c -o nco_netcdf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_pck.c -o nco_pck.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ppc.c -o nco_ppc.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_prn.lo nco_prn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_prn.h:21, BUILDSTDERR: from nco_prn.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rec_var.lo nco_rec_var.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_rec_var.h:17, BUILDSTDERR: from nco_rec_var.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rec_var.c -o nco_rec_var.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rgr.lo nco_rgr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rgr.c -fPIC -DPIC -o .libs/nco_rgr.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from nco_rgr.h:17, BUILDSTDERR: from nco_rgr.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rth_flt.lo nco_rth_flt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_flt.c -fPIC -DPIC -o .libs/nco_rth_flt.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_rth_flt.h:21, BUILDSTDERR: from nco_rth_flt.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: nco_prn.c: In function 'nco_prn_var_val_cmt': BUILDSTDERR: nco_prn.c:882:10: warning: 'val_sz_byt' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: size_t val_sz_byt; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: nco_prn.c: In function 'nco_prn_var_val_lmt': BUILDSTDERR: nco_prn.c:1324:46: warning: '%s' directive writing up to 99 bytes into a region of size 86 [-Wformat-overflow=] BUILDSTDERR: (void)sprintf(var_sng,"%%s%c%%ld--%%ld%c='%s' %%s",arr_lft_dlm,arr_rgt_dlm,dmn_sng); BUILDSTDERR: ^~ ~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from nco_prn.h:22, BUILDSTDERR: from nco_prn.c:10: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 118 bytes into a destination of size 100 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_flt.c -o nco_rth_flt.o >/dev/null 2>&1 BUILDSTDERR: nco_rgr.c: In function 'nco_sph_plg_area': BUILDSTDERR: nco_rgr.c:3986:9: warning: variable 'ngl_ltr_c' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double ngl_ltr_c; /* [rdn] Interior angle/great circle arc c, canonical latitude-triangle geometry */ BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: nco_rgr.c:3985:9: warning: variable 'ngl_ltr_b' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double ngl_ltr_b; /* [rdn] Interior angle/great circle arc b, canonical latitude-triangle geometry */ BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: nco_rgr.c:3984:9: warning: variable 'ngl_ltr_a' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double ngl_ltr_a; /* [rdn] Interior angle/small circle arc a, canonical latitude-triangle geometry */ BUILDSTDERR: ^~~~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rth_utl.lo nco_rth_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_utl.c -fPIC -DPIC -o .libs/nco_rth_utl.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_rth_utl.h:17, BUILDSTDERR: from nco_rth_utl.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_utl.c -o nco_rth_utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scl_utl.lo nco_scl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scl_utl.c -fPIC -DPIC -o .libs/nco_scl_utl.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_scl_utl.h:21, BUILDSTDERR: from nco_scl_utl.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scl_utl.c -o nco_scl_utl.o >/dev/null 2>&1 BUILDSTDERR: nco_rgr.c: In function 'nco_rgr_ini': BUILDSTDERR: nco_rgr.c:394:9: warning: 'cnv_nbr' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if(cnv_nbr != 4) cnv_nbr=sscanf(rgr_lst[rgr_var_idx].val,"%lf,%lf,%lf,%lf",&rgr->lon_wst,&rgr->lon_est,&rgr->lat_sth,&rgr->lat_nrt); BUILDSTDERR: ^ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scm.lo nco_scm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scm.c -fPIC -DPIC -o .libs/nco_scm.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_scm.h:21, BUILDSTDERR: from nco_scm.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scm.c -o nco_scm.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_prn.c -o nco_prn.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sld.lo nco_sld.c BUILDSTDERR: nco_rgr.c: In function 'nco_rgr_wgt': BUILDSTDERR: nco_rgr.c:1556:668: warning: 'idx_max_dvn' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stdout,"%s: INFO %s reports global metadata specifies conservative remapping with normalization of type = %s. Furthermore, destination fractions frc_dst = dst_frac = frac_b = frc_out contain non-unity elements (maximum deviation from unity of %g exceeds hard-coded (in variable eps_rlt) relative-epsilon threshold of %g for frc_out[%ld] = %g). Thus normalization issues will be explicitly treated. Will apply \'destarea\' normalization (i.e., divide by non-zero frc_out[dst_idx]) to all regridded arrays.\n",nco_prg_nm_get(),fnc_nm,nco_rgr_nrm_sng(nco_rgr_nrm_typ),frc_out_dff_one_max,eps_rlt,idx_max_dvn,frc_out[idx_max_dvn]); BUILDSTDERR: ^ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sld.c -fPIC -DPIC -o .libs/nco_sld.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_sld.h:17, BUILDSTDERR: from nco_sld.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sld.c -o nco_sld.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sng_utl.lo nco_sng_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_sng_utl.h:21, BUILDSTDERR: from nco_sng_utl.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_srm.lo nco_srm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from nco_srm.h:21, BUILDSTDERR: from nco_srm.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: nco_sng_utl.c: In function 'nm2sng_cdl': BUILDSTDERR: nco_sng_utl.c:270:34: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from nco_sng_utl.h:21, BUILDSTDERR: from nco_sng_utl.c:10: BUILDSTDERR: /usr/include/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output 5 bytes into a destination of size 4 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: nco_sng_utl.c: In function 'nm2sng_fl': BUILDSTDERR: nco_sng_utl.c:425:34: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from nco_sng_utl.h:21, BUILDSTDERR: from nco_sng_utl.c:10: BUILDSTDERR: /usr/include/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output 5 bytes into a destination of size 4 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_srm.c -o nco_srm.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sng_utl.c -o nco_sng_utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_avg.lo nco_var_avg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_var_avg.h:17, BUILDSTDERR: from nco_var_avg.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_lst.lo nco_var_lst.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o BUILDSTDERR: In file included from /usr/include/assert.h:35, BUILDSTDERR: from nco_var_lst.h:21, BUILDSTDERR: from nco_var_lst.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_rth.lo nco_var_rth.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_var_rth.h:21, BUILDSTDERR: from nco_var_rth.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_lst.c -o nco_var_lst.o >/dev/null 2>&1 BUILDSTDERR: nco_rgr.c: In function 'nco_grd_nfr': BUILDSTDERR: nco_rgr.c:7128:7: warning: 'lon_typ' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if(lon_typ == nco_grd_lon_nil){ BUILDSTDERR: ^ BUILDSTDERR: nco_rgr.c:7013:7: warning: 'lat_typ' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if(lat_typ == nco_grd_lat_nil){ BUILDSTDERR: ^ BUILDSTDERR: nco_rgr.c:7440:31: warning: 'msk_unn.vp' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if(msk_unn.vp) msk_unn.vp=(void *)nco_free(msk_unn.vp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_avg.c -o nco_var_avg.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_scv.lo nco_var_scv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from nco_var_scv.h:17, BUILDSTDERR: from nco_var_scv.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_utl.lo nco_var_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o BUILDSTDERR: In file included from /usr/include/assert.h:35, BUILDSTDERR: from nco_var_utl.h:21, BUILDSTDERR: from nco_var_utl.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rgr.c -o nco_rgr.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_scv.c -o nco_var_scv.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_rth.c -o nco_var_rth.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_utl.c -o nco_var_utl.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncbo.o ncbo.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from ncbo.c:58: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncecat.o ncecat.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from ncecat.c:46: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncflint.o ncflint.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from ncflint.c:43: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: ncecat.c: In function 'main': BUILDSTDERR: ncecat.c:773:30: warning: '%02d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=] BUILDSTDERR: sprintf(grp_out_sfx,"%02d",fl_idx); BUILDSTDERR: ^~~~ BUILDSTDERR: ncecat.c:773:29: note: directive argument in the range [0, 2147483647] BUILDSTDERR: sprintf(grp_out_sfx,"%02d",fl_idx); BUILDSTDERR: ^~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from ncecat.c:47: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 11 bytes into a destination of size 3 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ncecat.c:214:10: warning: 'grp_out_lng' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: size_t grp_out_lng; /* [nbr] Length of original, canonicalized GPE specification filename component */ BUILDSTDERR: ^~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncks.o ncks.c BUILDSTDERR: In file included from /usr/include/assert.h:35, BUILDSTDERR: from ncks.c:67: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncpdq.o ncpdq.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from ncpdq.c:46: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncra.o ncra.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from ncra.c:62: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: ncks.c: In function 'main': BUILDSTDERR: ncks.c:182:8: warning: 'in_id_arr' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int *in_id_arr; /* [id] netCDF file IDs used by OpenMP code */ BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: ncks.c:1397:51: warning: 'fl_lst_in' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if(fl_lst_in && fl_lst_abb == NULL) fl_lst_in=nco_sng_lst_free(fl_lst_in,fl_nbr); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncrename.o ncrename.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from ncrename.c:42: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncwa.o ncwa.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from ncwa.c:44: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_utl.o ncap_utl.c BUILDSTDERR: In file included from /usr/include/assert.h:35, BUILDSTDERR: from ncap_utl.c:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ test -f ncap_lex.c || /bin/sh ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_lex.o ncap_lex.c BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from ncap_lex.c:38: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: ncap_lex.c:2740:16: warning: 'input' defined but not used [-Wunused-function] BUILDSTDERR: static int input (void) BUILDSTDERR: ^~~~~ BUILDSTDERR: ncap_lex.c: In function 'nco_yylex': BUILDSTDERR: ncap_lex.l:606:34: warning: '%s' directive writing up to 255 bytes into a region of size 160 [-Wformat-overflow=] BUILDSTDERR: (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from ncap_lex.c:38: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 98 or more bytes (assuming 608) into a destination of size 200 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ncap_lex.l:582:29: warning: '%s' directive writing up to 255 bytes into a region of size 160 [-Wformat-overflow=] BUILDSTDERR: (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from ncap_lex.c:38: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 98 or more bytes (assuming 608) into a destination of size 200 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ncap_lex.l:629:34: warning: '%s' directive writing up to 255 bytes into a region of size 164 [-Wformat-overflow=] BUILDSTDERR: (void)sprintf(ncap_err_sng,"#Warning: unable to locate variable %s. So cannot create attribute %s",var_nm,yytext); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from ncap_lex.c:38: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 66 or more bytes (assuming 321) into a destination of size 200 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -release 4.7.4 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libnco.la -rpath /usr/lib64 nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_grp_utl.lo nco_grp_trv.lo nco_lmt.lo nco_lst_utl.lo nco_map.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_map.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_mta.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -L/usr/lib64 -lnetcdf -lcurl -lgsl -lgslcblas -ludunits2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -Wl,-soname -Wl,libnco-4.7.4.so -o .libs/libnco-4.7.4.so libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-4.7.4.so" "libnco.so") libtool: link: ar cru .libs/libnco.a nco_att_utl.o nco_aux.o nco_bnr.o nco_cln_utl.o nco_cnf_dmn.o nco_cnf_typ.o nco_cnk.o nco_cnv_arm.o nco_cnv_csm.o nco_ctl.o nco_dbg.o nco_dmn_utl.o nco_fl_utl.o nco_grp_utl.o nco_grp_trv.o nco_lmt.o nco_lst_utl.o nco_map.o nco_md5.o nco_mmr.o nco_msa.o nco_mss_val.o nco_mta.o nco_netcdf.o nco_omp.o nco_pck.o nco_ppc.o nco_prn.o nco_rec_var.o nco_rgr.o nco_rth_flt.o nco_rth_utl.o nco_scl_utl.o nco_scm.o nco_sld.o nco_sng_utl.o nco_srm.o nco_var_avg.o nco_var_lst.o nco_var_rth.o nco_var_scv.o nco_var_utl.o libtool: link: ranlib .libs/libnco.a libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncatted ncatted.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncbo ncbo.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncecat ncecat.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncflint ncflint.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncbo ncbo.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncatted ncatted.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncflint ncflint.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncecat ncecat.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncks ncks.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncpdq ncpdq.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncra ncra.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncrename ncrename.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncks ncks.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncpdq ncpdq.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncra ncra.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncrename ncrename.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncwa ncwa.o ncap_utl.o ncap_lex.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncwa ncwa.o ncap_utl.o ncap_lex.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src/nco' Making all in nco_c++ make[3]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src/nco_c++' /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o libnco_c___la-nco_att.lo `test -f 'nco_att.cc' || echo './'`nco_att.cc /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o libnco_c___la-nco_dmn.lo `test -f 'nco_dmn.cc' || echo './'`nco_dmn.cc /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o libnco_c___la-nco_fl.lo `test -f 'nco_fl.cc' || echo './'`nco_fl.cc /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o libnco_c___la-nco_hgh.lo `test -f 'nco_hgh.cc' || echo './'`nco_hgh.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c nco_att.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_att.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c nco_hgh.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_hgh.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c nco_fl.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_fl.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c nco_dmn.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_dmn.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c nco_hgh.cc -o libnco_c___la-nco_hgh.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c nco_dmn.cc -o libnco_c___la-nco_dmn.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c nco_fl.cc -o libnco_c___la-nco_fl.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c nco_att.cc -o libnco_c___la-nco_att.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o libnco_c___la-nco_utl.lo `test -f 'nco_utl.cc' || echo './'`nco_utl.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c nco_utl.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_utl.o /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o libnco_c___la-nco_var.lo `test -f 'nco_var.cc' || echo './'`nco_var.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c nco_var.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_var.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c nco_var.cc -o libnco_c___la-nco_var.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -release 4.7.4 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libnco_c++.la -rpath /usr/lib64 libnco_c___la-nco_att.lo libnco_c___la-nco_dmn.lo libnco_c___la-nco_fl.lo libnco_c___la-nco_hgh.lo libnco_c___la-nco_utl.lo libnco_c___la-nco_var.lo -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o .libs/libnco_c___la-nco_att.o .libs/libnco_c___la-nco_dmn.o .libs/libnco_c___la-nco_fl.o .libs/libnco_c___la-nco_hgh.o .libs/libnco_c___la-nco_utl.o .libs/libnco_c___la-nco_var.o -L/usr/lib64 -lnetcdf -lcurl -lgsl -lgslcblas -ludunits2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libnco_c++-4.7.4.so -o .libs/libnco_c++-4.7.4.so libtool: link: (cd ".libs" && rm -f "libnco_c++.so" && ln -s "libnco_c++-4.7.4.so" "libnco_c++.so") libtool: link: ar cru .libs/libnco_c++.a libnco_c___la-nco_att.o libnco_c___la-nco_dmn.o libnco_c___la-nco_fl.o libnco_c___la-nco_hgh.o libnco_c___la-nco_utl.o libnco_c___la-nco_var.o libtool: link: ranlib .libs/libnco_c++.a libtool: link: ( cd ".libs" && rm -f "libnco_c++.la" && ln -s "../libnco_c++.la" "libnco_c++.la" ) make[3]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src/nco_c++' Making all in nco++ make[3]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o Invoke.o Invoke.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o ncap2.o ncap2.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o ncap2_utl.o ncap2_utl.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o ncap2_att.o ncap2_att.cc BUILDSTDERR: In file included from libnco++.hh:26, BUILDSTDERR: from Invoke.cc:13: BUILDSTDERR: fmc_gsl_cls.hh:45: warning: "NCO_GSL_VERSION" redefined BUILDSTDERR: # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) BUILDSTDERR: BUILDSTDERR: In file included from fmc_gsl_cls.hh:12, BUILDSTDERR: from libnco++.hh:26, BUILDSTDERR: from Invoke.cc:13: BUILDSTDERR: ../../config.h:444: note: this is the location of the previous definition BUILDSTDERR: #define NCO_GSL_VERSION 204 BUILDSTDERR: BUILDSTDERR: In file included from libnco++.hh:26, BUILDSTDERR: from ncap2.cc:81: BUILDSTDERR: fmc_gsl_cls.hh:45: warning: "NCO_GSL_VERSION" redefined BUILDSTDERR: # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) BUILDSTDERR: BUILDSTDERR: In file included from fmc_gsl_cls.hh:12, BUILDSTDERR: from libnco++.hh:26, BUILDSTDERR: from ncap2.cc:81: BUILDSTDERR: ../../config.h:444: note: this is the location of the previous definition BUILDSTDERR: #define NCO_GSL_VERSION 204 BUILDSTDERR: g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o sdo_utl.o sdo_utl.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o sym_cls.o sym_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o fmc_cls.o fmc_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o fmc_all_cls.o fmc_all_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o fmc_gsl_cls.o fmc_gsl_cls.cc BUILDSTDERR: In file included from fmc_gsl_cls.cc:10: BUILDSTDERR: fmc_gsl_cls.hh:45: warning: "NCO_GSL_VERSION" redefined BUILDSTDERR: # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) BUILDSTDERR: BUILDSTDERR: In file included from ncap2_att.hh:5, BUILDSTDERR: from ncap2_utl.hh:60, BUILDSTDERR: from ncoGrammer.g:31, BUILDSTDERR: from fmc_gsl_cls.hh:39, BUILDSTDERR: from fmc_gsl_cls.cc:10: BUILDSTDERR: ../../config.h:444: note: this is the location of the previous definition BUILDSTDERR: #define NCO_GSL_VERSION 204 BUILDSTDERR: g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o prs_cls.o prs_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o NcapVar.o NcapVar.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o NcapVarVector.o NcapVarVector.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o ncoLexer.o ncoLexer.cpp BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mASSIGN(bool)': BUILDSTDERR: ncoLexer.cpp:416:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mPLUS_ASSIGN(bool)': BUILDSTDERR: ncoLexer.cpp:430:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mMINUS_ASSIGN(bool)': BUILDSTDERR: ncoLexer.cpp:444:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mTIMES_ASSIGN(bool)': BUILDSTDERR: ncoLexer.cpp:458:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mDIVIDE_ASSIGN(bool)': BUILDSTDERR: ncoLexer.cpp:472:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mINC(bool)': BUILDSTDERR: ncoLexer.cpp:486:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mDEC(bool)': BUILDSTDERR: ncoLexer.cpp:500:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mQUESTION(bool)': BUILDSTDERR: ncoLexer.cpp:514:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mLPAREN(bool)': BUILDSTDERR: ncoLexer.cpp:528:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mRPAREN(bool)': BUILDSTDERR: ncoLexer.cpp:542:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mLCURL(bool)': BUILDSTDERR: ncoLexer.cpp:556:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mRCURL(bool)': BUILDSTDERR: ncoLexer.cpp:570:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mLSQUARE(bool)': BUILDSTDERR: ncoLexer.cpp:584:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mRSQUARE(bool)': BUILDSTDERR: ncoLexer.cpp:598:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mCOMMA(bool)': BUILDSTDERR: ncoLexer.cpp:612:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mQUOTE(bool)': BUILDSTDERR: ncoLexer.cpp:626:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mSEMI(bool)': BUILDSTDERR: ncoLexer.cpp:640:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mCOLON(bool)': BUILDSTDERR: ncoLexer.cpp:654:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mCARET(bool)': BUILDSTDERR: ncoLexer.cpp:668:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mTIMES(bool)': BUILDSTDERR: ncoLexer.cpp:682:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mDIVIDE(bool)': BUILDSTDERR: ncoLexer.cpp:696:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mMOD(bool)': BUILDSTDERR: ncoLexer.cpp:710:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mPLUS(bool)': BUILDSTDERR: ncoLexer.cpp:724:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mMINUS(bool)': BUILDSTDERR: ncoLexer.cpp:738:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mEQ(bool)': BUILDSTDERR: ncoLexer.cpp:752:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mNEQ(bool)': BUILDSTDERR: ncoLexer.cpp:766:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mLTHAN(bool)': BUILDSTDERR: ncoLexer.cpp:780:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mGTHAN(bool)': BUILDSTDERR: ncoLexer.cpp:794:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mLEQ(bool)': BUILDSTDERR: ncoLexer.cpp:808:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mGEQ(bool)': BUILDSTDERR: ncoLexer.cpp:822:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mFLTHAN(bool)': BUILDSTDERR: ncoLexer.cpp:836:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mFGTHAN(bool)': BUILDSTDERR: ncoLexer.cpp:850:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mLAND(bool)': BUILDSTDERR: ncoLexer.cpp:864:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mLNOT(bool)': BUILDSTDERR: ncoLexer.cpp:878:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mLOR(bool)': BUILDSTDERR: ncoLexer.cpp:892:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mDOT(bool)': BUILDSTDERR: ncoLexer.cpp:906:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mCALL_REF(bool)': BUILDSTDERR: ncoLexer.cpp:920:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mDGT(bool)': BUILDSTDERR: ncoLexer.cpp:934:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mLPH(bool)': BUILDSTDERR: ncoLexer.cpp:950:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mLPHDGT(bool)': BUILDSTDERR: ncoLexer.cpp:1036:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mXPN(bool)': BUILDSTDERR: ncoLexer.cpp:1136:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mVAR_NM_QT(bool)': BUILDSTDERR: ncoLexer.cpp:1212:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mBLASTOUT(bool)': BUILDSTDERR: ncoLexer.cpp:1340:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mUNUSED_OPS(bool)': BUILDSTDERR: ncoLexer.cpp:1370:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mWS(bool)': BUILDSTDERR: ncoLexer.cpp:1422:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mCXX_COMMENT(bool)': BUILDSTDERR: ncoLexer.cpp:1472:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mC_COMMENT(bool)': BUILDSTDERR: ncoLexer.cpp:1502:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mNUMBER_DOT(bool)': BUILDSTDERR: ncoLexer.cpp:1560:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mNUMBER(bool)': BUILDSTDERR: ncoLexer.cpp:1684:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mVAR_ATT(bool)': BUILDSTDERR: ncoLexer.cpp:2036:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mATT_ID(bool)': BUILDSTDERR: ncoLexer.cpp:2317:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: ncoLexer.cpp: In member function 'void ncoLexer::mINCLUDE(bool)': BUILDSTDERR: ncoLexer.cpp:2688:44: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] BUILDSTDERR: ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; BUILDSTDERR: ^~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o ncoParser.o ncoParser.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -c -o ncoTree.o ncoTree.cpp gcc -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include/udunits2 -DENABLE_NETCDF4 -DHAVE_NETCDF4_H -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_gsl.o nco_gsl.c /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -L../nco -lnco -lantlr -lgsl -lgslcblas -lm -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fpermissive -fPIC -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -L../nco /builddir/build/BUILD/nco-4.7.4/src/nco/.libs/libnco.so -lantlr -L/usr/lib64 -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib64 make[3]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src' Making all in man make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4/man' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/man' Making all in doc make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4/doc' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/sh /builddir/build/BUILD/nco-4.7.4/autobld/missing makeinfo --version) >/dev/null 2>&1; then \ for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/sh /builddir/build/BUILD/nco-4.7.4/autobld/missing makeinfo -I . \ -o nco.info nco.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./nco.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/doc' make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4' make[1]: Leaving directory '/builddir/build/BUILD/nco-4.7.4' + make -C doc html pdf make: Entering directory '/builddir/build/BUILD/nco-4.7.4/doc' rm -rf nco.htp if /bin/sh /builddir/build/BUILD/nco-4.7.4/autobld/missing makeinfo --html --ifinfo --no-split -I . \ -o nco.htp nco.texi; \ then \ rm -rf nco.html && mv nco.htp nco.html; \ else \ rm -rf nco.htp; exit 1; \ fi TEXINPUTS="../autobld:$TEXINPUTS" \ MAKEINFO='/bin/sh /builddir/build/BUILD/nco-4.7.4/autobld/missing makeinfo -I .' \ texi2dvi --pdf --batch --build-dir=nco.t2p -o nco.pdf \ nco.texi This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-4.7.4/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/builddir/build/BUILD/nco-4.7.4/doc/my-bib-macros.texi) [1{/usr/share/texlive/ texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] [-2] (Foreword) [1] (Summary) [2] [3] [4] Chapter 1 [5] [6] Cross reference values unknown; you must run TeX again. 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indicate dimension size is fixed[] [149] [150] Overfull \hbox (89.6747pt too wide) in paragraph at lines 12425--12425 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12462--12462 []@texttt (A) var_out=array(val_srt, val_inc, $dmn_nm); // One-dimen sional output[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 12463--12463 []@texttt (B) var_out=array(val_srt, val_inc, var_tpl); // Multi-dim ensional output[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 12464--12464 []@texttt (C) var_out=array(val_srt, val_inc, /$dmn1,$dmn2...,$dmnN/); // Mult i-dimensional output[] [151] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12481--12481 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12510--12510 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [152] [153] [154] [155] Overfull \hbox (118.41814pt too wide) in paragraph at lines 12782--12782 [][] [156] [157] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12886--12886 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12905--12905 [][] [158] [159] [160] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13076--13076 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 13102--13102 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13113--13113 [][] [161] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13161--13161 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 13161--13161 [][] [162] [163] [164] [165] [166] [167] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13545--13545 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [168] Underfull \hbox (badness 10000) in paragraph at lines 13671--13680 []@textrm Consider ir-reg-u- [169] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13690--13690 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13732--13732 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13732--13732 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13732--13732 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13732--13732 [][] [170] [171] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13823--13823 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13848--13848 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [172] [173] [174] [175] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14051--14051 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14068--14068 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [176] [177] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14199--14199 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14199--14199 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14199--14199 [][] Overfull \hbox (187.40239pt too wide) in paragraph at lines 14207--14207 [][] [178] [179] Overfull \hbox (175.90501pt too wide) in paragraph at lines 14319--14319 [][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14319--14319 [][] [180] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14331--14331 [][] [181] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14450--14450 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 14467--14467 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] [182] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14500--14500 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [183] [184] [185] [186] Overfull \hbox (12.86244pt too wide) in paragraph at lines 14784--14785 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 14792--14793 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 14796--14797 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 14800--14801 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 14804--14805 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 14820--14821 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 14825--14826 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 14843--14843 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 14844--14844 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 14851--14851 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 14876--14877 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 14955--14956 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 14956--14957 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 14957--14958 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 14958--14958 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 14958--14959 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 14967--14968 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 14976--14977 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 14977--14977 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 14979--14980 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 14980--14980 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 15041--15041 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 10000) in paragraph at lines 15115--15117 []@texttt status=@textbf gsl[]fit[]linear Underfull \hbox (badness 10000) in paragraph at lines 15128--15129 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ [194] Underfull \hbox (badness 10000) in paragraph at lines 15149--15150 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ Overfull \hbox (14.94176pt too wide) in paragraph at lines 15177--15177 [][] [195] Overfull \hbox (158.65895pt too wide) in paragraph at lines 15207--15207 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 15207--15207 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 15207--15207 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 15226--15226 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 15227--15227 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15228--15228 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] [196] Overfull \hbox (14.94176pt too wide) in paragraph at lines 15235--15235 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 15236--15236 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 15237--15237 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [197] [198] Overfull \hbox (175.90501pt too wide) in paragraph at lines 15343--15343 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15345--15345 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [199] [200] [201] [202] Underfull \hbox (badness 10000) in paragraph at lines 15868--15884 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 15928--15944 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: [203] Underfull \hbox (badness 10000) in paragraph at lines 16014--16024 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [204] [205] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16223--16223 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16223--16223 [][] [206] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16301--16301 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16307--16307 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] Overfull \hbox (37.93651pt too wide) in paragraph at lines 17354--17354 []@texttt [-E @textttsl yr_prv@texttt ] [-e @textttsl yr_end@texttt ] [-f @tex tttsl fml_nm@texttt ] [--fl_fmt=@textttsl fl_fmt@texttt ] [-h @textttsl hst_nm@ texttt ] [-i @textttsl drc_in@texttt ][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 17386--17386 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [220] [221] [222] [223] [224] Overfull \hbox (38.26584pt too wide) in paragraph at lines 17941--17941 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 17942--17942 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [225] [226] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18097--18097 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18099--18099 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [227] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18165--18165 [][] [228] Overfull \hbox (37.93651pt too wide) in paragraph at lines 18210--18210 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [229] Underfull \hbox (badness 10000) in paragraph at lines 18384--18384 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - [230] Underfull \hbox (badness 10000) in paragraph at lines 18385--18385 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 18415--18415 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18421--18421 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 18422--18422 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] [231] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] [232] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18561--18561 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18568--18568 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 18570--18570 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [233] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18638--18638 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18644--18644 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 18671--18671 [][] [234] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18671--18671 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 18671--18671 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18671--18671 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18671--18671 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 18671--18671 [][] [235] [236] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18895--18895 [][] [237] [238] Overfull \hbox (32.18784pt too wide) in paragraph at lines 18940--18940 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--ga g] [--glb ...] [-h] [--hdf] [--hdr_pad @textttsl nbr@texttt ][] [239] [240] [241] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19210--19210 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 19211--19211 []@texttt [-O] [-o @textttsl output- [242] [243] [244] Overfull \hbox (60.93127pt too wide) in paragraph at lines 19437--19437 []@texttt [-F] [--fix_rec_crd] [-G @textttsl gpe_dsc@texttt ] [-g @textttsl gr p@texttt [,[]]] [--glb ...] [-h] [--hdr_pad @textttsl nbr@texttt ][] [245] [246] Overfull \hbox (43.6852pt too wide) in paragraph at lines 19682--19682 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [247] [248] [249] Overfull \hbox (32.51715pt too wide) in paragraph at lines 19935--19935 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 19936--19936 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 19939--19939 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 19940--19940 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [250] [251] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20128--20128 [][] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20149--20149 [][] [252] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20162--20162 []@texttt /usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local build s)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20163--20163 []@texttt /usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20164--20164 []@texttt /usr/bin/h4_ncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Ana conda)[] Overfull \hbox (124.49615pt too wide) in paragraph at lines 20165--20165 []@texttt /usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Deb ian packages?)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20166--20166 []@texttt hdp dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20167--20167 []@texttt h4_ncdump dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] [253] Overfull \hbox (26.76846pt too wide) in paragraph at lines 20244--20244 []@texttt % ncks -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out.nc[] [254] Overfull \hbox (549.89905pt too wide) in paragraph at lines 20356--20356 [][] Overfull \hbox (463.66873pt too wide) in paragraph at lines 20356--20356 [][] [255] Overfull \hbox (71.44443pt too wide) in paragraph at lines 20386--20386 [][] Overfull \hbox (94.43918pt too wide) in paragraph at lines 20386--20386 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20386--20386 [][] [256] Overfull \hbox (123.18262pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (123.18262pt too wide) in paragraph at lines 20490--20490 [][] Overfull \hbox (111.68524pt too wide) in paragraph at lines 20490--20490 [][] Overfull \hbox (232.40768pt too wide) in paragraph at lines 20490--20490 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 20490--20490 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20490--20490 [][] [257] [258] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20655--20655 [][] [259] Overfull \hbox (95.75272pt too wide) in paragraph at lines 20737--20737 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0. 123456789[] Overfull \hbox (193.48041pt too wide) in paragraph at lines 20740--20740 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567, 0.12345678, 0.123456789 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20745--20745 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0 .123 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20829--20829 [][] [260] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20872--20872 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 20872--20872 [][] Underfull \hbox (badness 10000) in paragraph at lines 20887--20902 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 20920--20920 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20920--20920 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 20920--20920 [][] [261] Overfull \hbox (26.76846pt too wide) in paragraph at lines 20920--20920 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20990--20990 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 21003--21003 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] 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mask_cond@texttt ] [-b] [-C] [-c][] Underfull \hbox (badness 10000) in paragraph at lines 24568--24568 []@texttt [-O] [-o @textttsl output- [307] [308] [309] [310] Chapter 5 [311] [312] [313] [314] [315] Chapter 6 [316] [317] Chapter 7 [318] (/builddir/build/BUILD/nco-4.7.4/doc/xmp/cmb_fl.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] [319] Overfull \hbox (32.18782pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [][] [320] Overfull \hbox (55.18257pt too wide) in paragraph at lines 56--56 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 70--70 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 74--74 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 79--79 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/cmb_fl_grp.sh [321] Overfull \hbox (32.18782pt too wide) in paragraph at lines 36--36 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 49--49 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(14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [342] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [343] [344] Overfull \hbox (60.93126pt too wide) in paragraph at lines 25879--25879 [][] Chapter 9 [345] [346] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26189--26189 [][] [347] [348] [349] [350] Overfull \hbox (37.93651pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 26189--26189 [][] [351] Overfull \hbox (693.28691pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26189--26189 [][] [352] Chapter 10 [353] [354] (General Index) [355] [356] [357] [358] ) (see the transcript file for additional information) Output written on nco.pdf (362 pages, 1378018 bytes). Transcript written on nco.log. This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-4.7.4/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) 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[][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6795--6795 [][] [80] Overfull \hbox (20.69044pt too wide) in paragraph at lines 6795--6795 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6795--6795 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 6824--6824 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 6824--6824 [][] [81] [82] [83] [84] [85] [86] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7311--7311 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7311--7311 [][] [87] [88] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7451--7451 [][] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] Overfull \hbox (55.18257pt too wide) in paragraph at lines 9284--9284 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h 0.0001-01.nc[] [111] [112] [113] [114] [115] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9689--9689 [][] [116] [117] [118] [119] [120] [121] [122] Overfull \hbox (20.69044pt too wide) in paragraph at lines 10353--10353 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10360--10360 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [123] [124] [125] [126] [127] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10739--10739 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10740--10740 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 10741--10741 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 10742--10742 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10750--10750 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [128] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10792--10792 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [129] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10867--10867 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [130] [131] [132] Overfull \hbox (32.18782pt too wide) in paragraph at lines 11055--11055 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [133] [134] Overfull \hbox (112.66945pt too wide) in paragraph at lines 11255--11255 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11255--11255 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 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paragraph at lines 12264--12264 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12267--12267 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [149] [150] Overfull \hbox (89.6747pt too wide) in paragraph at lines 12425--12425 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12462--12462 []@texttt (A) var_out=array(val_srt, val_inc, $dmn_nm); // One-dimen sional output[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 12463--12463 []@texttt (B) var_out=array(val_srt, val_inc, var_tpl); // Multi-dim ensional output[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 12464--12464 []@texttt (C) var_out=array(val_srt, val_inc, /$dmn1,$dmn2...,$dmnN/); // Mult i-dimensional output[] [151] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12481--12481 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12510--12510 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [152] [153] [154] [155] Overfull \hbox (118.41814pt too wide) in paragraph at lines 12782--12782 [][] [156] [157] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12886--12886 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12905--12905 [][] [158] [159] [160] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13076--13076 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 13102--13102 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13113--13113 [][] [161] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13161--13161 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 13161--13161 [][] [162] [163] [164] [165] [166] [167] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13545--13545 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [168] Underfull \hbox (badness 10000) in paragraph at lines 13671--13680 []@textrm Consider ir-reg-u- [169] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13690--13690 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13732--13732 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13732--13732 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13732--13732 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13732--13732 [][] [170] [171] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13823--13823 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13848--13848 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [172] [173] [174] [175] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14051--14051 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14068--14068 [] @texttt 4. 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var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [183] [184] [185] [186] Overfull \hbox (12.86244pt too wide) in paragraph at lines 14784--14785 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 14792--14793 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 14796--14797 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 14800--14801 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 14804--14805 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 14820--14821 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 14825--14826 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 14843--14843 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 14844--14844 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 14851--14851 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 14876--14877 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 14955--14956 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 14956--14957 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 14957--14958 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 14958--14958 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 14958--14959 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 14967--14968 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 14976--14977 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 14977--14977 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 14979--14980 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 14980--14980 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 15041--15041 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 10000) in paragraph at lines 15115--15117 []@texttt status=@textbf gsl[]fit[]linear Underfull \hbox (badness 10000) in paragraph at lines 15128--15129 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ [194] Underfull \hbox (badness 10000) in paragraph at lines 15149--15150 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ Overfull \hbox (14.94176pt too wide) in paragraph at lines 15177--15177 [][] [195] Overfull \hbox (158.65895pt too wide) in paragraph at lines 15207--15207 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 15207--15207 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 15207--15207 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 15226--15226 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 15227--15227 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15228--15228 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] [196] Overfull \hbox (14.94176pt too wide) in paragraph at lines 15235--15235 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 15236--15236 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 15237--15237 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [197] [198] Overfull \hbox (175.90501pt too wide) in paragraph at lines 15343--15343 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15345--15345 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [199] [200] [201] [202] Underfull \hbox (badness 10000) in paragraph at lines 15868--15884 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 15928--15944 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: [203] Underfull \hbox (badness 10000) in paragraph at lines 16014--16024 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [204] [205] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16223--16223 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16223--16223 [][] [206] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16301--16301 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16307--16307 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] Overfull \hbox (37.93651pt too wide) in paragraph at lines 17354--17354 []@texttt [-E @textttsl yr_prv@texttt ] [-e @textttsl yr_end@texttt ] [-f @tex tttsl fml_nm@texttt ] [--fl_fmt=@textttsl fl_fmt@texttt ] [-h @textttsl hst_nm@ texttt ] [-i @textttsl drc_in@texttt ][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 17386--17386 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [220] [221] [222] [223] [224] Overfull \hbox (38.26584pt too wide) in paragraph at lines 17941--17941 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 17942--17942 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [225] [226] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18097--18097 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18099--18099 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [227] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18165--18165 [][] [228] Overfull \hbox (37.93651pt too wide) in paragraph at lines 18210--18210 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [229] Underfull \hbox (badness 10000) in paragraph at lines 18384--18384 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - [230] Underfull \hbox (badness 10000) in paragraph at lines 18385--18385 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 18415--18415 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18421--18421 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 18422--18422 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] [231] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] [232] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18561--18561 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18568--18568 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 18570--18570 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [233] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18638--18638 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18644--18644 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 18671--18671 [][] [234] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18671--18671 [][] Overfull 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[-F] [--fix_rec_crd] [-G @textttsl gpe_dsc@texttt ] [-g @textttsl gr p@texttt [,[]]] [--glb ...] [-h] [--hdr_pad @textttsl nbr@texttt ][] [245] [246] Overfull \hbox (43.6852pt too wide) in paragraph at lines 19682--19682 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [247] [248] [249] Overfull \hbox (32.51715pt too wide) in paragraph at lines 19935--19935 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 19936--19936 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 19939--19939 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 19940--19940 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [250] [251] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20128--20128 [][] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20149--20149 [][] [252] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20162--20162 []@texttt /usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local build s)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20163--20163 []@texttt /usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20164--20164 []@texttt /usr/bin/h4_ncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Ana conda)[] Overfull \hbox (124.49615pt too wide) in paragraph at lines 20165--20165 []@texttt /usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Deb ian packages?)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20166--20166 []@texttt hdp dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20167--20167 []@texttt h4_ncdump dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] [253] Overfull \hbox (26.76846pt too wide) in paragraph at lines 20244--20244 []@texttt % ncks -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out.nc[] [254] Overfull \hbox (549.89905pt too wide) in paragraph at lines 20356--20356 [][] Overfull \hbox (463.66873pt too wide) in paragraph at lines 20356--20356 [][] [255] Overfull \hbox (71.44443pt too wide) in paragraph at lines 20386--20386 [][] Overfull \hbox (94.43918pt too wide) in paragraph at lines 20386--20386 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20386--20386 [][] [256] Overfull \hbox (123.18262pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (123.18262pt too wide) in paragraph at lines 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[][] [260] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20872--20872 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 20872--20872 [][] Underfull \hbox (badness 10000) in paragraph at lines 20887--20902 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 20920--20920 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20920--20920 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 20920--20920 [][] [261] Overfull \hbox (26.76846pt too wide) in paragraph at lines 20920--20920 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20990--20990 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 21003--21003 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] 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dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 22006--22006 []@texttt [-O] [-o @textttsl output- Overfull \hbox (37.93651pt too wide) in paragraph at lines 22006--22006 @textttsl file@texttt ] [-p @textttsl path@texttt ] [--ppc ...] [-R] [-r] [--r am_all] [--rec_apn] [--rth_dbl|flt][] [276] [277] [278] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22251--22251 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 22255--22255 []@texttt [-O] [-o @textttsl output- [279] [280] Overfull \hbox (49.43388pt too wide) in paragraph at lines 22388--22388 []@texttt [--msk_dst=@textttsl msk_dst@texttt ] [--msk_out=@textttsl msk_out@t exttt ] [--msk_src=@textttsl msk_src@texttt ] [--mss_val=@textttsl mss_val@text tt ][] [281] [282] Overfull \hbox (61.26059pt too wide) in paragraph at lines 22594--22594 [][] Underfull \hbox (badness 10000) in paragraph at lines 22601--22602 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22603--22607 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22608--22609 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22612--22613 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv [283] Overfull \hbox (55.5119pt too wide) in paragraph at lines 22660--22660 []@texttt ncremap --a2o -a se2fv_flx --src_grd=atm.nc --dst_grd=ocn.nc -m map. nc[] Overfull \hbox (55.5119pt too wide) in paragraph at lines 22662--22662 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mask_cond@texttt ] [-b] [-C] [-c][] Underfull \hbox (badness 10000) in paragraph at lines 24568--24568 []@texttt [-O] [-o @textttsl output- [306] [307] [308] [309] Chapter 5 [310] [311] [312] [313] Chapter 6 [314] [315] Chapter 7 [316] (/builddir/build/BUILD/nco-4.7.4/doc/xmp/cmb_fl.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] [317] Overfull \hbox (32.18782pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [][] [318] Overfull \hbox (55.18257pt too wide) in paragraph at lines 56--56 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 70--70 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 74--74 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 79--79 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/cmb_fl_grp.sh [319] Overfull \hbox (32.18782pt too wide) in paragraph at lines 36--36 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 49--49 [][] 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too wide) in paragraph at lines 31--31 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 33--33 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 37--37 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/bi_interp.nco [337] Overfull \hbox (14.94176pt too wide) in paragraph at lines 34--34 [][][][] [338] Overfull \hbox (20.69044pt too wide) in paragraph at lines 61--61 [][][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/add_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 5--5 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 6--6 [][][][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 8--8 [][][] [339] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [340] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [341] [342] Overfull \hbox (60.93126pt too wide) in paragraph at lines 25879--25879 [][] Chapter 9 [343] [344] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26189--26189 [][] [345] [346] [347] [348] Overfull \hbox (37.93651pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 26189--26189 [][] [349] Overfull \hbox (693.28691pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26189--26189 [][] [350] Chapter 10 [351] [352] (General Index) [353] [354] (./nco.cps [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372]) [373] [374] ) (see the transcript file for additional information) Output written on nco.pdf (382 pages, 1610429 bytes). Transcript written on nco.log. This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-4.7.4/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./nco.aux) (/builddir/build/BUILD/nco-4.7.4/doc/my-bib-macros.texi) [1{/usr/share/texlive/ texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (./nco.toc [-1] [-2] [-3] [-4]) [-5] [-6] (./nco.toc) (./nco.toc) (Foreword) [1] (Summary) [2] [3] [4] Chapter 1 [5] [6] [7] [8] [9] [10] [11] [12] Overfull \hbox (32.18782pt too wide) in paragraph at lines 1381--1381 []@texttt ncks fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)[] [13] [14] [15] Chapter 2 [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 3 [27] [28] [29] [30] [31] [32] Overfull \hbox (55.18257pt too wide) in paragraph at lines 3036--3036 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3064--3064 [][] [33] [34] [35] [36] [37] [38] [39] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3756--3756 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [40] Overfull \hbox (382.85777pt too wide) in paragraph at lines 3803--3803 []@texttt ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/ope ndap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5[] Overfull \hbox (658.79478pt too wide) in paragraph at lines 3805--3805 []@texttt ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u _velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtof s_glo_2ds_forecast_daily_prog ~/foo.nc[] [41] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3878--3878 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [42] [43] [44] [45] [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 4280--4280 []@texttt # Convert file with groups, multiple record dimensions + netCDF4 ato mic types[] [47] [48] [49] [50] [51] [52] [53] [54] [55] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5025--5025 []@texttt ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /ces m to /[] Overfull 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[][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6795--6795 [][] [80] Overfull \hbox (20.69044pt too wide) in paragraph at lines 6795--6795 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6795--6795 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 6824--6824 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 6824--6824 [][] [81] [82] [83] [84] [85] [86] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7311--7311 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7311--7311 [][] [87] [88] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7451--7451 [][] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] Overfull \hbox (55.18257pt too wide) in paragraph at lines 9284--9284 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h 0.0001-01.nc[] [111] [112] [113] [114] [115] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9689--9689 [][] [116] [117] [118] [119] [120] [121] [122] Overfull \hbox (20.69044pt too wide) in paragraph at lines 10353--10353 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10360--10360 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [123] [124] [125] [126] [127] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10739--10739 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10740--10740 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 10741--10741 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 10742--10742 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10750--10750 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [128] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10792--10792 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [129] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10867--10867 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [130] [131] [132] Overfull \hbox (32.18782pt too wide) in paragraph at lines 11055--11055 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [133] [134] Overfull \hbox (112.66945pt too wide) in paragraph at lines 11255--11255 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11255--11255 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11255--11255 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 11255--11255 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11255--11255 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 11255--11255 [][] Overfull \hbox (193.15108pt too wide) in paragraph at lines 11255--11255 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11255--11255 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11255--11255 [][] [135] [136] [137] [138] [139] Chapter 4 Underfull \hbox (badness 10000) in paragraph at lines 11805--11826 @texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by [140] [141] [142] [143] Overfull \hbox (66.67995pt too wide) in paragraph at lines 11889--11889 []@texttt [-D @textttsl dbg@texttt ] [-F] [-f] [--glb ...] [-h] [--hdf] [--hdr _pad @textttsl nbr@texttt ] [-L @textttsl dfl_lvl@texttt ] [-l @textttsl path@t exttt ][] [144] [145] [146] [147] [148] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12264--12264 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12267--12267 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [149] [150] Overfull \hbox (89.6747pt too wide) in paragraph at lines 12425--12425 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12462--12462 []@texttt (A) var_out=array(val_srt, val_inc, $dmn_nm); // One-dimen sional output[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 12463--12463 []@texttt (B) var_out=array(val_srt, val_inc, var_tpl); // Multi-dim ensional output[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 12464--12464 []@texttt (C) var_out=array(val_srt, val_inc, /$dmn1,$dmn2...,$dmnN/); // Mult i-dimensional output[] [151] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12481--12481 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12510--12510 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [152] [153] [154] [155] Overfull \hbox (118.41814pt too wide) in paragraph at lines 12782--12782 [][] [156] [157] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12886--12886 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12905--12905 [][] [158] [159] [160] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13076--13076 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 13102--13102 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13113--13113 [][] [161] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13161--13161 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 13161--13161 [][] [162] [163] [164] [165] [166] [167] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13545--13545 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [168] Underfull \hbox (badness 10000) in paragraph at lines 13671--13680 []@textrm Consider ir-reg-u- [169] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13690--13690 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13732--13732 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13732--13732 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13732--13732 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13732--13732 [][] [170] [171] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13823--13823 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13848--13848 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [172] [173] [174] [175] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14051--14051 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14068--14068 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [176] [177] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14199--14199 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14199--14199 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14199--14199 [][] Overfull \hbox (187.40239pt too wide) in paragraph at lines 14207--14207 [][] [178] [179] Overfull \hbox (175.90501pt too wide) in paragraph at lines 14319--14319 [][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14319--14319 [][] [180] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14331--14331 [][] [181] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14450--14450 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 14467--14467 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] [182] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14500--14500 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [183] [184] [185] [186] Overfull \hbox (12.86244pt too wide) in paragraph at lines 14784--14785 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 14792--14793 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 14796--14797 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 14800--14801 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 14804--14805 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 14820--14821 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 14825--14826 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 14843--14843 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 14844--14844 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 14851--14851 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 14876--14877 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 14955--14956 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 14956--14957 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 14957--14958 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 14958--14958 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 14958--14959 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 14967--14968 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 14976--14977 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 14977--14977 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 14979--14980 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 14980--14980 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 15041--15041 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 10000) in paragraph at lines 15115--15117 []@texttt status=@textbf gsl[]fit[]linear Underfull \hbox (badness 10000) in paragraph at lines 15128--15129 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ [194] Underfull \hbox (badness 10000) in paragraph at lines 15149--15150 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ Overfull \hbox (14.94176pt too wide) in paragraph at lines 15177--15177 [][] [195] Overfull \hbox (158.65895pt too wide) in paragraph at lines 15207--15207 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 15207--15207 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 15207--15207 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 15226--15226 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 15227--15227 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15228--15228 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] [196] Overfull \hbox (14.94176pt too wide) in paragraph at lines 15235--15235 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 15236--15236 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 15237--15237 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [197] [198] Overfull \hbox (175.90501pt too wide) in paragraph at lines 15343--15343 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15345--15345 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [199] [200] [201] [202] Underfull \hbox (badness 10000) in paragraph at lines 15868--15884 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 15928--15944 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: [203] Underfull \hbox (badness 10000) in paragraph at lines 16014--16024 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [204] [205] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16223--16223 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16223--16223 [][] [206] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16301--16301 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16307--16307 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] Overfull \hbox (37.93651pt too wide) in paragraph at lines 17354--17354 []@texttt [-E @textttsl yr_prv@texttt ] [-e @textttsl yr_end@texttt ] [-f @tex tttsl fml_nm@texttt ] [--fl_fmt=@textttsl fl_fmt@texttt ] [-h @textttsl hst_nm@ texttt ] [-i @textttsl drc_in@texttt ][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 17386--17386 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [220] [221] [222] [223] [224] Overfull \hbox (38.26584pt too wide) in paragraph at lines 17941--17941 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 17942--17942 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [225] [226] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18097--18097 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18099--18099 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [227] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18165--18165 [][] [228] Overfull \hbox (37.93651pt too wide) in paragraph at lines 18210--18210 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [229] Underfull \hbox (badness 10000) in paragraph at lines 18384--18384 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - [230] Underfull \hbox (badness 10000) in paragraph at lines 18385--18385 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 18415--18415 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18421--18421 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 18422--18422 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] [231] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18459--18459 [][] [232] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18561--18561 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18568--18568 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 18570--18570 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [233] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18638--18638 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18644--18644 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 18671--18671 [][] [234] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18671--18671 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 18671--18671 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18671--18671 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18671--18671 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 18671--18671 [][] [235] [236] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18895--18895 [][] [237] [238] Overfull \hbox (32.18784pt too wide) in paragraph at lines 18940--18940 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--ga g] [--glb ...] [-h] [--hdf] [--hdr_pad @textttsl nbr@texttt ][] [239] [240] [241] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19210--19210 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 19211--19211 []@texttt [-O] [-o @textttsl output- [242] [243] [244] Overfull \hbox (60.93127pt too wide) in paragraph at lines 19437--19437 []@texttt [-F] [--fix_rec_crd] [-G @textttsl gpe_dsc@texttt ] [-g @textttsl gr p@texttt [,[]]] [--glb ...] [-h] [--hdr_pad @textttsl nbr@texttt ][] [245] [246] Overfull \hbox (43.6852pt too wide) in paragraph at lines 19682--19682 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [247] [248] [249] Overfull \hbox (32.51715pt too wide) in paragraph at lines 19935--19935 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 19936--19936 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 19939--19939 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 19940--19940 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [250] [251] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20128--20128 [][] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20149--20149 [][] [252] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20162--20162 []@texttt /usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local build s)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20163--20163 []@texttt /usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20164--20164 []@texttt /usr/bin/h4_ncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Ana conda)[] Overfull \hbox (124.49615pt too wide) in paragraph at lines 20165--20165 []@texttt /usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Deb ian packages?)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20166--20166 []@texttt hdp dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20167--20167 []@texttt h4_ncdump dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] [253] Overfull \hbox (26.76846pt too wide) in paragraph at lines 20244--20244 []@texttt % ncks -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out.nc[] [254] Overfull \hbox (549.89905pt too wide) in paragraph at lines 20356--20356 [][] Overfull \hbox (463.66873pt too wide) in paragraph at lines 20356--20356 [][] [255] Overfull \hbox (71.44443pt too wide) in paragraph at lines 20386--20386 [][] Overfull \hbox (94.43918pt too wide) in paragraph at lines 20386--20386 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20386--20386 [][] [256] Overfull \hbox (123.18262pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20451--20451 [][] Overfull \hbox (123.18262pt too wide) in paragraph at lines 20490--20490 [][] Overfull \hbox (111.68524pt too wide) in paragraph at lines 20490--20490 [][] Overfull \hbox (232.40768pt too wide) in paragraph at lines 20490--20490 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 20490--20490 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20490--20490 [][] [257] [258] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20655--20655 [][] [259] Overfull \hbox (95.75272pt too wide) in paragraph at lines 20737--20737 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0. 123456789[] Overfull \hbox (193.48041pt too wide) in paragraph at lines 20740--20740 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567, 0.12345678, 0.123456789 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20745--20745 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0 .123 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20829--20829 [][] [260] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20872--20872 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 20872--20872 [][] Underfull \hbox (badness 10000) in paragraph at lines 20887--20902 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 20920--20920 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20920--20920 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 20920--20920 [][] [261] Overfull \hbox (26.76846pt too wide) in paragraph at lines 20920--20920 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20990--20990 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 21003--21003 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 21011--21011 [][] [262] Overfull \hbox (262.13533pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (256.38664pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (158.65895pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (256.38664pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (371.3604pt too wide) in paragraph at lines 21109--21109 [][] [263] Overfull \hbox (164.40764pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (377.10909pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (135.6642pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (221.89452pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 21109--21109 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 21109--21109 [][] [264] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21189--21189 []@texttt # Change values to be sure original values are not copied in followi ng step[] [265] [266] [267] Overfull \hbox (32.18784pt too wide) in paragraph at lines 21408--21408 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [- v @textttsl var@texttt [,[]]] [-X ...] [-x][] [268] [269] [270] [271] [272] [273] [274] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21940--21940 []@texttt ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21953--21953 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim ension[] [275] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22002--22002 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 22006--22006 []@texttt [-O] [-o @textttsl output- Overfull \hbox (37.93651pt too wide) in paragraph at lines 22006--22006 @textttsl file@texttt ] [-p @textttsl path@texttt ] [--ppc ...] [-R] [-r] [--r am_all] [--rec_apn] [--rth_dbl|flt][] [276] [277] [278] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22251--22251 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 22255--22255 []@texttt [-O] [-o @textttsl output- [279] [280] Overfull \hbox (49.43388pt too wide) in paragraph at lines 22388--22388 []@texttt [--msk_dst=@textttsl msk_dst@texttt ] [--msk_out=@textttsl msk_out@t exttt ] [--msk_src=@textttsl msk_src@texttt ] [--mss_val=@textttsl mss_val@text tt ][] [281] [282] Overfull \hbox (61.26059pt too wide) in paragraph at lines 22594--22594 [][] Underfull \hbox (badness 10000) in paragraph at lines 22601--22602 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22603--22607 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22608--22609 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22612--22613 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv [283] Overfull \hbox (55.5119pt too wide) in paragraph at lines 22660--22660 []@texttt ncremap --a2o -a se2fv_flx --src_grd=atm.nc --dst_grd=ocn.nc -m map. nc[] Overfull \hbox (55.5119pt too wide) in paragraph at lines 22662--22662 []@texttt ncremap -a se2fv_flx --src_grd=ocn.nc --dst_grd=atm.nc -m map. nc[] Overfull \hbox (67.00928pt too wide) in paragraph at lines 22663--22663 []@texttt ncremap -a se2fv_flx --src_grd=atm1.nc --dst_grd=atm2.nc -m ma p.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 22682--22682 []@texttt ....Try swapping order of mesh A and B, or override with --allow_no_ overlap[] [284] [285] [286] [287] [288] [289] Overfull \hbox (15.27109pt too wide) in paragraph at lines 23316--23316 []@texttt ncremap -P cice -i in.nc -s src_grd.nc -d dst_data.nc -o out.nc[] [290] [291] [292] [293] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23629--23629 []@texttt ncremap -V var_rgr -i in.nc -d dst.nc -O ~/rgr # CF coordinates conv ention[] Overfull \hbox (118.74747pt too wide) in paragraph at lines 23631--23631 []@texttt ncremap -R "--rgr lat_nm=xq --rgr lon_nm=zj" -i in.nc -d dst.nc -O ~ /rgr # Manual[] [294] [295] Overfull \hbox (55.18257pt too wide) in paragraph at lines 23900--23900 []@texttt ncpdq -a Time,nVertLevels,maxEdges,MaxEdges2,nEdges,nCells mpas.nc m pas_ncpdq.nc[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 23901--23901 []@texttt ncremap -R "--rgr col_nm=nCells" -i mpas_ncpdq.nc -m mpas120_to_t62. nc -O ~/rgr[] [296] [297] [298] [299] [300] Underfull \hbox (badness 10000) in paragraph at lines 24162--24162 []@texttt [--glb ...] [-h] [--hdf] [--hdr_pad @textttsl nbr@texttt ] [-l @text ttsl path@texttt ] [-O] [-o @textttsl output- [301] [302] [303] Overfull \hbox (187.40239pt too wide) in paragraph at lines 24443--24443 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 24443--24443 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 24458--24458 [][] [304] Overfull \hbox (216.14583pt too wide) in paragraph at lines 24487--24487 [][] [305] Overfull \hbox (49.4339pt too wide) in paragraph at lines 24561--24561 []@texttt ncwa [-3] [-4] [-5] [-6] [-7] [-A] [-a @textttsl dim@texttt [,[]]] [ -B @textttsl mask_cond@texttt ] [-b] [-C] [-c][] Underfull \hbox (badness 10000) in paragraph at lines 24568--24568 []@texttt [-O] [-o @textttsl output- [306] [307] [308] [309] Chapter 5 [310] [311] [312] [313] Chapter 6 [314] [315] Chapter 7 [316] (/builddir/build/BUILD/nco-4.7.4/doc/xmp/cmb_fl.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] [317] Overfull \hbox (32.18782pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [][] [318] Overfull \hbox (55.18257pt too wide) in paragraph at lines 56--56 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 70--70 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 74--74 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 79--79 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/cmb_fl_grp.sh [319] Overfull \hbox (32.18782pt too wide) in paragraph at lines 36--36 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 49--49 [][] [320] Overfull \hbox (43.6852pt too wide) in paragraph at lines 51--51 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 52--52 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 55--55 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 56--56 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 59--59 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 64--64 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 72--72 [][] [321]) [322] (/builddir/build/BUILD/nco-4.7.4/doc/xmp/glb_avg.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 3--3 [][] [323] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14--14 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 19--19 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 26--26 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 29--29 [][] 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48--48 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 63--63 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 71--71 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 85--85 [][] [328] Overfull \hbox (43.6852pt too wide) in paragraph at lines 93--93 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 97--97 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 105--105 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 114--114 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 122--122 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 127--127 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 129--129 [][] [329] Overfull \hbox (20.69044pt too wide) in paragraph at lines 138--138 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/gsl_rgr.nco Overfull \hbox (26.43913pt too wide) in paragraph at lines 5--5 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 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Overfull \hbox (49.43388pt too wide) in paragraph at lines 68--68 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 71--71 [][] [334] Overfull \hbox (43.6852pt too wide) in paragraph at lines 76--76 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 77--77 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/mcc_grp.sh [335]) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/rgr.sh [336] Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 6--6 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10--10 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 27--27 [][][][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 28--28 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 33--33 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 37--37 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/bi_interp.nco [337] Overfull \hbox (14.94176pt too wide) in paragraph at lines 34--34 [][][][] [338] Overfull \hbox (20.69044pt too wide) in paragraph at lines 61--61 [][][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/add_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 5--5 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 6--6 [][][][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 8--8 [][][] [339] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-4.7.4/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [340] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [341] [342] Overfull \hbox (60.93126pt too wide) in paragraph at lines 25879--25879 [][] Chapter 9 [343] [344] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26189--26189 [][] [345] [346] [347] [348] Overfull \hbox (37.93651pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 26189--26189 [][] [349] Overfull \hbox (693.28691pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26189--26189 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26189--26189 [][] [350] Chapter 10 [351] [352] (General Index) [353] [354] (./nco.cps [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372]) [373] [374] ) (see the transcript file for additional information) Output written on nco.pdf (382 pages, 1610465 bytes). Transcript written on nco.log. make: Leaving directory '/builddir/build/BUILD/nco-4.7.4/doc' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.hZprqt + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64 + cd nco-4.7.4 + mkdir -p /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/include/nco + make install DESTDIR=/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64 Making install in data make[1]: Entering directory '/builddir/build/BUILD/nco-4.7.4/data' make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4/data' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin' /usr/bin/install -c ncclimo ncremap '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/data' make[1]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/data' Making install in src make[1]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src' Making install in nco make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src/nco' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco.la '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64' libtool: install: /usr/bin/install -c .libs/libnco-4.7.4.so /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco-4.7.4.so libtool: install: (cd /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64 && { ln -s -f libnco-4.7.4.so libnco.so || { rm -f libnco.so && ln -s libnco-4.7.4.so libnco.so; }; }) libtool: install: /usr/bin/install -c .libs/libnco.lai /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco.la libtool: install: /usr/bin/install -c .libs/libnco.a /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco.a libtool: install: chmod 644 /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco.a libtool: install: ranlib /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco.a BUILDSTDERR: libtool: install: warning: remember to run `libtool --finish /usr/lib64' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin' BUILDSTDERR: libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncatted /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncatted BUILDSTDERR: libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncbo /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncbo BUILDSTDERR: libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncecat /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncecat BUILDSTDERR: libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncflint /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncflint BUILDSTDERR: libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncks /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncks BUILDSTDERR: libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncpdq /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncpdq BUILDSTDERR: libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncra /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncra BUILDSTDERR: libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncrename /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncrename BUILDSTDERR: libtool: install: warning: `libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncwa /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncwa make install-exec-hook make[4]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src/nco' cd /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) cd /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) cd /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) cd /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) make[4]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src/nco' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src/nco' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src/nco' Making install in nco_c++ make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src/nco_c++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src/nco_c++' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco_c++.la '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64' libtool: install: /usr/bin/install -c .libs/libnco_c++-4.7.4.so /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco_c++-4.7.4.so libtool: install: (cd /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64 && { ln -s -f libnco_c++-4.7.4.so libnco_c++.so || { rm -f libnco_c++.so && ln -s libnco_c++-4.7.4.so libnco_c++.so; }; }) libtool: install: /usr/bin/install -c .libs/libnco_c++.lai /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco_c++.la libtool: install: /usr/bin/install -c .libs/libnco_c++.a /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco_c++.a libtool: install: chmod 644 /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco_c++.a libtool: install: ranlib /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco_c++.a BUILDSTDERR: libtool: install: warning: remember to run `libtool --finish /usr/lib64' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/include/nco' /usr/bin/install -c -m 644 libnco_c++.hh nco_dmn.hh nco_hgh.hh nco_var.hh nco_att.hh nco_fl.hh nco_utl.hh '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/include/nco' make[3]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src/nco_c++' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src/nco_c++' Making install in nco++ make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src/nco++' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap2 '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin' BUILDSTDERR: libtool: install: warning: `/builddir/build/BUILD/nco-4.7.4/src/nco/libnco.la' has not been installed in `/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncap2 /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncap2 make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src/nco++' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src/nco++' make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src' make[3]: Entering directory '/builddir/build/BUILD/nco-4.7.4/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src' make[1]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/src' Making install in man make[1]: Entering directory '/builddir/build/BUILD/nco-4.7.4/man' make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4/man' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/man/man1' /usr/bin/install -c -m 644 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncremap.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1 '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/man/man1' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/man' make[1]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/man' Making install in doc make[1]: Entering directory '/builddir/build/BUILD/nco-4.7.4/doc' make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4/doc' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/info' /usr/bin/install -c -m 644 ./nco.info ./nco.info-1 ./nco.info-2 ./nco.info-3 ./nco.info-4 '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/info' install-info --info-dir='/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/info' '/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/info/nco.info' make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/doc' make[1]: Leaving directory '/builddir/build/BUILD/nco-4.7.4/doc' make[1]: Entering directory '/builddir/build/BUILD/nco-4.7.4' make[2]: Entering directory '/builddir/build/BUILD/nco-4.7.4' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/nco-4.7.4' make[1]: Leaving directory '/builddir/build/BUILD/nco-4.7.4' + rm /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco.la /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco_c++.la + rm -f /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/info/dir + chrpath -d -k /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncap2 /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncatted /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncbo /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncclimo /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncdiff /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncea /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncecat /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/nces /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncflint /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncks /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncpdq /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncra /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncrcat /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncremap /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncrename /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncwa BUILDSTDERR: `/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncclimo' probably isn't an ELF file. BUILDSTDERR: elf_open: Exec format error BUILDSTDERR: `/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncremap' probably isn't an ELF file. BUILDSTDERR: elf_open: Exec format error + : + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 4.7.4-1.fc29 --unique-debug-suffix -4.7.4-1.fc29.riscv64 --unique-debug-src-base nco-4.7.4-1.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/nco-4.7.4 extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncpdq extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncflint extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncks extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncbo extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncecat extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncap2 extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncwa extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncra extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncatted extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/bin/ncrename extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco-4.7.4.so extracting debug info from /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/lib64/libnco_c++-4.7.4.so /usr/lib/rpm/sepdebugcrcfix: Updated 12 CRC32s, 0 CRC32s did match. BUILDSTDERR: cpio: src/nco/ncap_yacc.h: Cannot stat: No such file or directory BUILDSTDERR: cpio: src/nco/ncap_yacc.y: Cannot stat: No such file or directory BUILDSTDERR: 10490 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: nco-4.7.4-1.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.U6JvgW + umask 022 + cd /builddir/build/BUILD + cd nco-4.7.4 + DOCDIR=/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + cp -pr doc/README /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + cp -pr doc/rtfm.txt /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + cp -pr doc/nco.html /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + cp -pr doc/nco.pdf /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + cp -pr doc/nco.css /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + cp -pr doc/index.shtml /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + cp -pr doc/TODO /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + cp -pr doc/ChangeLog /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + cp -pr doc/nco.png /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + cp -pr doc/nco_news.shtml /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + cp -pr doc/nsf.png /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/doc/nco + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.kkKoVS + umask 022 + cd /builddir/build/BUILD + cd nco-4.7.4 + LICENSEDIR=/builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/licenses/nco + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/licenses/nco + cp -pr doc/LICENSE /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64/usr/share/licenses/nco + exit 0 Provides: libnco-4.7.4.so()(64bit) libnco_c++-4.7.4.so()(64bit) nco = 4.7.4-1.fc29 nco(riscv-64) = 4.7.4-1.fc29 Requires(interp): /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(postun): /bin/sh Requires: /bin/bash ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcurl.so.4()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.2.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.23()(64bit) libgslcblas.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libnco-4.7.4.so()(64bit) libnetcdf.so.11()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libudunits2.so.0()(64bit) rtld(GNU_HASH) Processing files: nco-devel-4.7.4-1.fc29.riscv64 Provides: nco-devel = 4.7.4-1.fc29 nco-devel(riscv-64) = 4.7.4-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-static-4.7.4-1.fc29.riscv64 Provides: nco-static = 4.7.4-1.fc29 nco-static(riscv-64) = 4.7.4-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-debugsource-4.7.4-1.fc29.riscv64 Provides: nco-debugsource = 4.7.4-1.fc29 nco-debugsource(riscv-64) = 4.7.4-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-debuginfo-4.7.4-1.fc29.riscv64 Provides: debuginfo(build-id) = 0703eff0873d5fd6f39bac3b101d0df703e55d73 debuginfo(build-id) = 0e4a2c6e8c9b53d88e791f6cb735e30674d9844a debuginfo(build-id) = 250ce5c274fb07560267fdacbeea70d9608d38a9 debuginfo(build-id) = 42269140e4bcd75f12b79dda25448bd0d26de6a6 debuginfo(build-id) = 44f9fd3dcdfd04024a970f7afb12afb742cc4415 debuginfo(build-id) = 53eae0df3a77db3dfedeceb448a2edfc54fb884f debuginfo(build-id) = 687a86267ba2d48d205c6aef189c7235613675ab debuginfo(build-id) = 92c6f1cc56b3ea7711725c69188a923f49b451e3 debuginfo(build-id) = 997dc8031a97b550e26e730dee0be5805612c080 debuginfo(build-id) = beb6cd4126adaf80e96203dbb8ecd9b2b89631f5 debuginfo(build-id) = c592d44ac2f7f4ccc2b0743cacf3e1c88aba7b7a debuginfo(build-id) = fef959b997ac00ee8a152682f1587e99ddf9c115 nco-debuginfo = 4.7.4-1.fc29 nco-debuginfo(riscv-64) = 4.7.4-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: nco-debugsource(riscv-64) = 4.7.4-1.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64 Wrote: /builddir/build/RPMS/nco-4.7.4-1.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/nco-devel-4.7.4-1.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/nco-static-4.7.4-1.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/nco-debugsource-4.7.4-1.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/nco-debuginfo-4.7.4-1.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.vN6cce + umask 022 + cd /builddir/build/BUILD + cd nco-4.7.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/nco-4.7.4-1.fc29.riscv64 + exit 0 Child return code was: 0