Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/f29-build-3100-851/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False BUILDSTDERR: sh: /usr/bin/perl: No such file or directory BUILDSTDERR: sh: /usr/bin/perl: No such file or directory BUILDSTDERR: sh: /usr/bin/perl: No such file or directory Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/libsbml-5.16.0-7.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/f29-build-3100-851/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.yVWmXz + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libSBML-5.16.0-Source + /usr/bin/gzip -dc /builddir/build/SOURCES/libSBML-5.16.0-core-plus-packages-src.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd libSBML-5.16.0-Source + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (libsbml-use-system-minizip-cmake.patch): + echo 'Patch #0 (libsbml-use-system-minizip-cmake.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 753 (offset 57 lines). patching file src/CMakeLists.txt Hunk #1 succeeded at 353 (offset -1 lines). Hunk #2 succeeded at 372 (offset -1 lines). patching file src/sbml/compress/zipfstream.h Patch #1 (libsbml-fix_install_libpaths.patch): + echo 'Patch #1 (libsbml-fix_install_libpaths.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file CMakeLists.txt patching file src/bindings/ruby/CMakeLists.txt patching file src/bindings/csharp/CMakeLists.txt patching file src/bindings/octave/CMakeLists.txt patching file src/bindings/perl/CMakeLists.txt + unzip -n /builddir/build/SOURCES/render-5.16.0-beta-1.zip Archive: /builddir/build/SOURCES/render-5.16.0-beta-1.zip inflating: render-package.cmake inflating: src/bindings/csharp/local-downcast-extension-render.i inflating: src/bindings/csharp/local-downcast-namespaces-render.i inflating: src/bindings/csharp/local-packages-render.i inflating: src/bindings/java/local-downcast-extension-render.i inflating: src/bindings/java/local-downcast-namespaces-render.i inflating: src/bindings/java/local-packages-render.i inflating: src/bindings/javascript/local-downcast-extension-render.cpp inflating: src/bindings/javascript/local-downcast-namespaces-render.cpp inflating: src/bindings/javascript/local-downcast-packages-render.cpp inflating: src/bindings/javascript/local-downcast-plugins-render.cpp inflating: src/bindings/javascript/local-render.i inflating: src/bindings/perl/local-downcast-extension-render.cpp inflating: src/bindings/perl/local-downcast-namespaces-render.cpp inflating: src/bindings/perl/local-downcast-packages-render.cpp inflating: src/bindings/perl/local-downcast-plugins-render.cpp inflating: src/bindings/perl/local-render.i inflating: src/bindings/php/local-downcast-extension-render.cpp inflating: src/bindings/php/local-downcast-namespaces-render.cpp inflating: src/bindings/php/local-downcast-packages-render.cpp inflating: src/bindings/php/local-downcast-plugins-render.cpp inflating: src/bindings/php/local-render.i inflating: src/bindings/python/local-downcast-extension-render.cpp inflating: src/bindings/python/local-downcast-namespaces-render.cpp inflating: src/bindings/python/local-downcast-packages-render.cpp inflating: src/bindings/python/local-downcast-plugins-render.cpp inflating: src/bindings/python/local-render.i inflating: src/bindings/r/local-downcast-extension-render.cpp inflating: src/bindings/r/local-downcast-namespaces-render.cpp inflating: src/bindings/r/local-downcast-packages-render.cpp inflating: src/bindings/r/local-downcast-plugins-render.cpp inflating: src/bindings/r/local-render.i inflating: src/bindings/ruby/local-downcast-extension-render.cpp inflating: src/bindings/ruby/local-downcast-namespaces-render.cpp inflating: src/bindings/ruby/local-downcast-packages-render.cpp inflating: src/bindings/ruby/local-downcast-plugins-render.cpp inflating: src/bindings/ruby/local-render.i inflating: src/bindings/swig/render-package.h inflating: src/bindings/swig/render-package.i inflating: src/render-package.cmake creating: src/sbml/packages/render/ creating: src/sbml/packages/render/common/ inflating: src/sbml/packages/render/common/RenderExtensionTypes.h inflating: src/sbml/packages/render/common/renderfwd.h creating: src/sbml/packages/render/extension/ inflating: src/sbml/packages/render/extension/RenderExtension.cpp inflating: src/sbml/packages/render/extension/RenderExtension.h inflating: src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp inflating: src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.h inflating: src/sbml/packages/render/extension/RenderLayoutPlugin.cpp inflating: src/sbml/packages/render/extension/RenderLayoutPlugin.h inflating: src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp inflating: src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.h inflating: src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp inflating: src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.h creating: src/sbml/packages/render/sbml/ inflating: src/sbml/packages/render/sbml/ColorDefinition.cpp inflating: src/sbml/packages/render/sbml/ColorDefinition.h inflating: src/sbml/packages/render/sbml/DefaultValues.cpp inflating: src/sbml/packages/render/sbml/DefaultValues.h inflating: src/sbml/packages/render/sbml/Ellipse.cpp inflating: src/sbml/packages/render/sbml/Ellipse.h inflating: src/sbml/packages/render/sbml/GlobalRenderInformation.cpp inflating: src/sbml/packages/render/sbml/GlobalRenderInformation.h inflating: src/sbml/packages/render/sbml/GlobalStyle.cpp inflating: src/sbml/packages/render/sbml/GlobalStyle.h inflating: src/sbml/packages/render/sbml/GradientBase.cpp inflating: src/sbml/packages/render/sbml/GradientBase.h inflating: src/sbml/packages/render/sbml/GradientStop.cpp inflating: src/sbml/packages/render/sbml/GradientStop.h inflating: src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp inflating: src/sbml/packages/render/sbml/GraphicalPrimitive1D.h inflating: src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp inflating: src/sbml/packages/render/sbml/GraphicalPrimitive2D.h inflating: src/sbml/packages/render/sbml/Image.cpp inflating: src/sbml/packages/render/sbml/Image.h inflating: src/sbml/packages/render/sbml/LinearGradient.cpp inflating: src/sbml/packages/render/sbml/LinearGradient.h inflating: src/sbml/packages/render/sbml/LineEnding.cpp inflating: src/sbml/packages/render/sbml/LineEnding.h inflating: src/sbml/packages/render/sbml/ListOfCurveElements.cpp inflating: src/sbml/packages/render/sbml/ListOfCurveElements.h inflating: src/sbml/packages/render/sbml/LocalRenderInformation.cpp inflating: src/sbml/packages/render/sbml/LocalRenderInformation.h inflating: src/sbml/packages/render/sbml/LocalStyle.cpp inflating: src/sbml/packages/render/sbml/LocalStyle.h inflating: src/sbml/packages/render/sbml/Polygon.cpp inflating: src/sbml/packages/render/sbml/Polygon.h inflating: src/sbml/packages/render/sbml/RadialGradient.cpp inflating: src/sbml/packages/render/sbml/RadialGradient.h inflating: src/sbml/packages/render/sbml/Rectangle.cpp inflating: src/sbml/packages/render/sbml/Rectangle.h inflating: src/sbml/packages/render/sbml/RelAbsVector.cpp inflating: src/sbml/packages/render/sbml/RelAbsVector.h inflating: src/sbml/packages/render/sbml/RenderCubicBezier.cpp inflating: src/sbml/packages/render/sbml/RenderCubicBezier.h inflating: src/sbml/packages/render/sbml/RenderCurve.cpp inflating: src/sbml/packages/render/sbml/RenderCurve.h inflating: src/sbml/packages/render/sbml/RenderGroup.cpp inflating: src/sbml/packages/render/sbml/RenderGroup.h inflating: src/sbml/packages/render/sbml/RenderInformationBase.cpp inflating: src/sbml/packages/render/sbml/RenderInformationBase.h inflating: src/sbml/packages/render/sbml/RenderPoint.cpp inflating: src/sbml/packages/render/sbml/RenderPoint.h inflating: src/sbml/packages/render/sbml/Style.cpp inflating: src/sbml/packages/render/sbml/Style.h creating: src/sbml/packages/render/sbml/test/ inflating: src/sbml/packages/render/sbml/test/CMakeLists.txt creating: src/sbml/packages/render/sbml/test/test-data/ inflating: src/sbml/packages/render/sbml/test/test-data/FutileCycle.xml inflating: src/sbml/packages/render/sbml/test/test-data/simplenode.xml inflating: src/sbml/packages/render/sbml/test/TestColorDefinition.cpp inflating: src/sbml/packages/render/sbml/test/TestEllipse.cpp inflating: src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp inflating: src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp inflating: src/sbml/packages/render/sbml/test/TestGradientBase.cpp inflating: src/sbml/packages/render/sbml/test/TestGradientStop.cpp inflating: src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp inflating: src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp inflating: src/sbml/packages/render/sbml/test/TestGroup.cpp inflating: src/sbml/packages/render/sbml/test/TestImage.cpp inflating: src/sbml/packages/render/sbml/test/TestLinearGradient.cpp inflating: src/sbml/packages/render/sbml/test/TestLineEnding.cpp inflating: src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp inflating: src/sbml/packages/render/sbml/test/TestLocalStyle.cpp inflating: src/sbml/packages/render/sbml/test/TestPolygon.cpp inflating: src/sbml/packages/render/sbml/test/TestRadialGradient.cpp inflating: src/sbml/packages/render/sbml/test/TestRectangle.cpp inflating: src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderCurve.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderExtension.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderPoint.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderReading.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderWriting.cpp inflating: src/sbml/packages/render/sbml/test/TestRunner.c inflating: src/sbml/packages/render/sbml/test/TestStyle.cpp inflating: src/sbml/packages/render/sbml/test/TestText.cpp inflating: src/sbml/packages/render/sbml/test/TestTransformation.cpp inflating: src/sbml/packages/render/sbml/test/TestTransformation2D.cpp inflating: src/sbml/packages/render/sbml/Text.cpp inflating: src/sbml/packages/render/sbml/Text.h inflating: src/sbml/packages/render/sbml/Transformation.cpp inflating: src/sbml/packages/render/sbml/Transformation.h inflating: src/sbml/packages/render/sbml/Transformation2D.cpp inflating: src/sbml/packages/render/sbml/Transformation2D.h creating: src/sbml/packages/render/util/ inflating: src/sbml/packages/render/util/RenderLayoutConverter.cpp inflating: src/sbml/packages/render/util/RenderLayoutConverter.h inflating: src/sbml/packages/render/util/RenderUtilities.cpp inflating: src/sbml/packages/render/util/RenderUtilities.h extracting: src/sbml/packages/render-register.cxx inflating: src/sbml/packages/render-register.h creating: examples/c++/render/ inflating: examples/c++/render/addRenderInformation.cpp inflating: examples/c++/render/CMakeLists.txt inflating: examples/c++/render/convertLayout.cpp inflating: examples/c++/render/oldCMakeLists.txt inflating: examples/c++/render/printRenderInformation.cpp inflating: examples/c++/render/removeRenderInformation.cpp creating: examples/java/render/ inflating: examples/java/render/addRenderInformation.java inflating: examples/java/render/CMakeLists.txt inflating: examples/java/render/printRenderInformation.java inflating: examples/java/render/removeRenderInformation.java creating: examples/python/render/ inflating: examples/python/render/addRenderInformation.py inflating: examples/python/render/printRenderInformation.py inflating: examples/python/render/removeRenderInformation.py inflating: examples/render-package.cmake creating: examples/sample-models/render/ inflating: examples/sample-models/render/simple-L2-layout.xml inflating: examples/sample-models/render/simple-L2-render-global.xml inflating: examples/sample-models/render/simple-L2-render-local.xml inflating: examples/sample-models/render/simple-L2.xml + iconv -f latin1 -t utf8 NEWS.txt + touch -r NEWS.txt t + mv t NEWS.txt BUILDSTDERR: ++ find docs/src/filters -type f '(' -name '*.py' ')' + for i in `find docs/src/filters -type f \( -name "*.py" \)` + sed -i -r 's|(#!/usr/bin/env python) +#.*|#!/usr/bin/python2|' docs/src/filters/doc-filter-python.py + for i in `find docs/src/filters -type f \( -name "*.py" \)` + sed -i -r 's|(#!/usr/bin/env python) +#.*|#!/usr/bin/python2|' docs/src/filters/doc-filter-c.py + for i in `find docs/src/filters -type f \( -name "*.py" \)` + sed -i -r 's|(#!/usr/bin/env python) +#.*|#!/usr/bin/python2|' docs/src/filters/doc-filter-csharp.py + rm -v src/sbml/compress/crypt.h src/sbml/compress/ioapi.c src/sbml/compress/ioapi.h src/sbml/compress/iowin32.c src/sbml/compress/iowin32.h src/sbml/compress/unzip.c src/sbml/compress/unzip.h src/sbml/compress/zip.c src/sbml/compress/zip.h removed 'src/sbml/compress/crypt.h' removed 'src/sbml/compress/ioapi.c' removed 'src/sbml/compress/ioapi.h' removed 'src/sbml/compress/iowin32.c' removed 'src/sbml/compress/iowin32.h' removed 'src/sbml/compress/unzip.c' removed 'src/sbml/compress/unzip.h' removed 'src/sbml/compress/zip.c' removed 'src/sbml/compress/zip.h' + grep -e 'This file was automatically generated by SWIG' -r . -l + xargs rm + mkdir build-docs BUILDSTDERR: ++ /bin/ls -1 BUILDSTDERR: ++ grep -v build-docs + cp -a AUTHORS.txt CMakeLists.txt COPYING.html COPYING.txt FUNDING.txt LICENSE.html LICENSE.txt Makefile.in NEWS.txt OLD_NEWS.txt README-extension.txt README.txt VERSION.txt VERSION_PACKAGES.ac acinclude.m4 aclocal.m4 cmake_uninstall.cmake.in common.cmake comp-package.cmake config configure configure.ac docs examples fbc-package.cmake groups-package.cmake layout-package.cmake libsbml.spec.in macosx multi-package.cmake qual-package.cmake render-package.cmake src build-docs/ + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.3QK5gk + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.16.0-Source + mkdir -p build2 build + pushd build2 ~/build/BUILD/libSBML-5.16.0-Source/build2 ~/build/BUILD/libSBML-5.16.0-Source + export 'LDFLAGS=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed' + export 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_PYTHON:BOOL=ON -DWITH_CHECK=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python2.7 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython2.7.so -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DWITH_LIBXML:BOOL=ON -DWITH_EXPAT:BOOL=OFF -DWITH_MATLAB:BOOL=OFF -Wno-dev -DEXIT_ON_ERROR:BOOL=ON .. -- The C compiler identification is GNU 8.1.1 -- The CXX compiler identification is GNU 8.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "3.0.12") -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Found PkgConfig: /usr/bin/pkg-config (found version "1.4.2") -- Checking for module 'minizip' -- Found minizip, version 1.2.11 -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found PythonInterp: /usr/bin/python2 (found version "2.7.15") -- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.15") -- ---------------------------------------------------------------------- libSBML version 5.16.0 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/Software/libsbml/issue-tracker To contact the developers directly, email libsbml-team@googlegroups.com Configured on host 'five.home.annexia.org' host type = Linux host operating system = Linux 4.15.0-00044-g2b0aa1de45f6-dirty host CPU architecture = riscv64 General build flags: CC = /usr/bin/cc CXX = /usr/bin/c++ CPPFLAGS = -DLINUX CFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib64/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig (Version 3.0.12) -- Using Python = /usr/bin/python2 -- Using libcheck = /usr/lib64/libcheck.so -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- Use Legacy Math = no -- -- Support for SBML Level 3 Packages: -- SBML 'comp' package = ON -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done -- Generating done BUILDSTDERR: CMake Warning: BUILDSTDERR: Manually-specified variables were not used by the project: BUILDSTDERR: CMAKE_Fortran_FLAGS_RELEASE BUILDSTDERR: CSHARP_COMPILER BUILDSTDERR: INCLUDE_INSTALL_DIR BUILDSTDERR: LIB_SUFFIX BUILDSTDERR: SHARE_INSTALL_PREFIX BUILDSTDERR: SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libSBML-5.16.0-Source/build2 + make -j4 /usr/bin/cmake -H/builddir/build/BUILD/libSBML-5.16.0-Source -B/builddir/build/BUILD/libSBML-5.16.0-Source/build2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.16.0-Source/build2/CMakeFiles /builddir/build/BUILD/libSBML-5.16.0-Source/build2/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/CMakeFiles/sbml.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/CMakeFiles/sbml-static.dir/DependInfo.cmake --color= [ 0%] Swig Python source cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/python2 /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.16.0-Source --master /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/pydoc-doxygen.i --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_MULTI --define USE_QUAL --define USE_RENDER Scanning dependencies of target sbml-static make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build Scanning dependencies of target sbml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.cpp [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.cpp [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:309:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:450:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:66, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:389:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:520:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:309:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:450:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:66, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:389:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:520:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:164:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:360:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:434:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:541:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:164:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:360:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:434:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:541:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/python2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/generate-class-name-list.py /builddir/build/BUILD/libSBML-5.16.0-Source/src > /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/class-list.txt BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:158:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:158:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/python2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/generate-converters-list.py /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/class-list.txt > /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/libsbml-converters.txt cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/python2 /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py -f /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/pydoc-doxygen.i -o /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/pydoc-normal.i -i /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../../../docs/src/common-text -g /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../../../docs/src/common-graphics [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:114:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Port.cpp [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:114:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Port.cpp [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp Warning: unable to expand @htmlinclude 'pkg-marker-render.html' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/cmake -E rename pydoc-doxygen.i pydoc.i cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/include -DGENERATING_DOCS -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_SWIG_PYTHON_2_UNICODE -o /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/libsbml.i [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:548:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:658:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:669:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:39: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:493:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:548:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:658:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:669:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:39: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:493:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:281:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:281:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:320:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:320:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:141, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:193:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:847:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1112:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1292:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1497:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:144:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:442:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:296:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:333:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:370:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:141, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:193:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:847:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1112:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1292:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1497:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:101, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:972:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1009:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1046:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1142:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1150:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1158:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1166:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:144:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:442:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:308:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:345:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:382:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:121, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1252:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Association.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1166:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1262:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:296:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:333:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:370:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:346:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:695:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:85, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1172:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1268:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:101, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:972:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1009:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1046:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1142:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1150:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1158:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1166:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:308:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:345:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:382:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:92, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:208:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:223:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:238:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:986:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:121, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1252:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1166:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1262:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:346:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:695:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:85, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1172:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1268:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.h:130, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:468:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1439:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1558:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:92, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:208:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:223:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:238:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:986:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.h:130, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:468:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1439:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1558:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints 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src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-doxygen.i cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/cmake -E rename libsbml.py libsbml-doxygen.py cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/cmake -E rename pydoc-normal.i pydoc.i cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/include -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_SWIG_PYTHON_2_UNICODE -o /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/libsbml.i [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:229:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:229:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.h:160, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp:447:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.h:160, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp:447:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:243:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:303:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Member.cpp [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:96, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:343:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:454:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:243:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:303:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:96, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:343:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:454:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Member.cpp [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:479:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/BoundingBox.cpp [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:479:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/BoundingBox.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:357:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:372:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:640:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:647:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1174:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:357:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:372:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:640:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:36, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1198:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1378:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1394:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1410:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1425:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1441:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1458:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2039:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2211:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2363:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2512:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2661:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:647:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1174:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:36, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1198:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.cpp [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1378:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1394:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1410:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1425:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1441:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1458:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2039:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2211:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2363:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2512:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2661:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:494:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:966:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.cpp [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:494:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:966:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/util/LayoutUtilities.cpp [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:135:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:580:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:135:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:580:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:46, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:131:8: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:127:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:320:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:347:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:403:4: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:46, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:131:8: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:49, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:124:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:132:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:479:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:632:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:734:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:127:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:320:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:347:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:403:4: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:49, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:124:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:49, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:123:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:294:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:132:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:479:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:632:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:734:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:49, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:123:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:294:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-normal.i cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python" -DVERSION="5.16.0" -P /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/add_version.cmake BUILDSTDERR: Python: Add Version to generated file cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python" -P /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/patch-python.cmake -- Patching Python wrapper [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 20%] Built target binding_python_swig [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:738:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:738:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:449:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:606:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:763:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:920:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1177:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1623:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:449:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:606:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:763:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:920:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1177:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1623:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:109, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:815:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:738:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:109, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:815:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:544:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:757:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1377:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1384:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:427:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:618:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:999:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:586:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:738:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:929:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:860:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:854:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:544:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:757:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1377:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1384:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:83, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:270:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:456:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:427:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:618:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:999:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:586:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:860:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:929:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:854:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:83, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:270:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:456:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:866:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1048:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1077:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1134:3: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.h:98, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1419:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1314:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:80, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1399:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.h:82, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:451:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:635:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:793:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1825:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints 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src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:866:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1048:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1077:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1134:3: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.h:98, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1419:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:425:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:684:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1314:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.h:72, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:806:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In member function 'virtual bool ColorDefinition::hasRequiredAttributes() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1073:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mRed == this->mRed) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1074:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mGreen == this->mGreen) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1075:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mBlue == this->mBlue) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1076:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mAlpha == this->mAlpha); BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:80, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1399:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.h:82, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:451:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:635:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:793:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1825:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createStyle(const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:303:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:751:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:759:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:1062:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Style.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:244:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:332:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:560:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:457:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:563:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:425:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:684:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderPoint.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:251:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.h:72, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:806:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In member function 'virtual bool ColorDefinition::hasRequiredAttributes() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1073:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mRed == this->mRed) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1074:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mGreen == this->mGreen) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1075:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mBlue == this->mBlue) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1076:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mAlpha == this->mAlpha); BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:352:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:636:8: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:645:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:967:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Style.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:337:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:117:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:340:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:374:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createStyle(const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:303:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:751:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:759:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:1062:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Style.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:244:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:332:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:560:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:457:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:308:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:343:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:811:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:845:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:879:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:913:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:947:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:981:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1015:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1411:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1852:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:450:9: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:675:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:713:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:940:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Image.cpp [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:563:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Style.cpp [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Text.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderPoint.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:251:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:352:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:636:8: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:645:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:967:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Transformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Style.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:337:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:117:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:340:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:374:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util/RenderUtilities.cpp [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/CVTerm.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/ModelCreator.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp: In member function 'void Date::parseDateNumbersToString()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:459:25: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u-%u-", mYear, mMonth); BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:459:25: note: directive argument in the range [10, 4294967295] BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 6 and 23 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:465:25: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%uT", mDay); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:471:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHour); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:477:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mMinute); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:483:25: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mSecond); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:502:27: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHoursOffset); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:508:27: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mMinutesOffset); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/ModelHistory.cpp [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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-c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/common/libsbml-version.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/common/operationReturnValues.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/ConversionOption.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:308:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:343:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/ConversionProperties.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:811:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:845:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:879:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:913:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:947:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:981:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1015:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1411:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1852:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:450:9: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:675:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:713:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:940:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLConverter.cpp [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLConverterRegistry.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLIdConverter.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Text.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.cpp [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Transformation.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.cpp [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.cpp [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util/RenderUtilities.cpp [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLRateOfConverter.cpp [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLStripPackageConverter.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp: In member function 'void Date::parseDateNumbersToString()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:459:25: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u-%u-", mYear, mMonth); BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:459:25: note: directive argument in the range [10, 4294967295] BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 6 and 23 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:465:25: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%uT", mDay); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:471:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHour); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:477:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mMinute); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:483:25: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mSecond); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:502:27: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHoursOffset); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:508:27: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mMinutesOffset); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/ModelHistory.cpp [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/ISBMLExtensionNamespaces.cpp [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLDocumentPlugin.cpp [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/RegisterConverters.cpp [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLConverter.cpp [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.cpp [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionException.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-o CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLIdConverter.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function 'bool SBMLExtensionRegistry::setEnabled(const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:353:56: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; BUILDSTDERR: ^~~~~ [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp:401:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp:417:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLRateOfConverter.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLReactionConverter.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp:525:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp:541:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp:2094:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp:2110:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp:1136:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp:1152:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp:876:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp:892:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLStripPackageConverter.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLUnitsConverter.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp:884:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp:900:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/ASTBasePlugin.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp:2357:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp:2373:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp:1289:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp:1305:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ExpectedAttributes.cpp [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/ISBMLExtensionNamespaces.cpp [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLDocumentPlugin.cpp [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp:1361:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp:1377:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp:1271:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp:1287:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp:2047:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp:2063:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.cpp [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionException.cpp [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ListOf.cpp [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp:828:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp:844:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp:7333:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp:7349:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp:431:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp:447:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function 'bool SBMLExtensionRegistry::setEnabled(const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:353:56: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; BUILDSTDERR: ^~~~~ [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp:1991:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp:2007:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp:732:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp:748:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp:401:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp:417:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp:525:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp:541:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp:523:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp:539:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp:2094:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp:2110:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp:876:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp:892:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp:2661:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp:2677:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1908:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1924:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1940:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1956:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1972:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1988:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp:1136:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp:1152:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLConstructorException.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp:884:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp:900:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLConvert.cpp [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp:2357:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp:2373:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp:1289:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp:1305:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2301:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2317:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2333:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLError.cpp [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ExpectedAttributes.cpp [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp:1361:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp:1377:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLErrorLog.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp:1271:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp:1287:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLNamespaces.cpp [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLReader.cpp [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ListOf.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp:2047:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp:2063:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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-o CMakeFiles/sbml.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLVisitor.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLVisitor.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLVisitor.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp:828:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp:844:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp:7333:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp:7349:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLWriter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLWriter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLWriter.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBO.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp:431:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp:447:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBase.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp:1991:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp:2007:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SimpleSpeciesReference.cpp [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp:732:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp:748:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp:523:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp:539:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp:2657:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp:2673:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp:2661:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp:2677:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1908:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1924:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1940:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1956:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1972:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1988:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLConstructorException.cpp [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLConvert.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp:874:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp:890:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:1969:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:1985:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:2001:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:2017:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2301:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2317:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2333:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLError.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SyntaxChecker.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp:638:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp:654:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLErrorLog.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp:1008:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp:1024:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp:2711:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLNamespaces.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp:2410:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp:2426:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLReader.cpp [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLTransforms.cpp [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLVisitor.cpp [ 46%] Building C object src/CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitKind.c [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/FormulaUnitsData.cpp [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBO.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBO.cpp [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/UnitFormulaFormatter.cpp [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBase.cpp [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/units/UnitKindList.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/UnitKindList.cpp [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/ElementFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/ElementFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/ElementFilter.cpp [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/IdFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/IdFilter.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp:2657:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp:2673:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:1969:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:1985:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:2001:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:2017:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdList.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/IdList.cpp [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdentifierTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/IdentifierTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/IdentifierTransformer.cpp [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/List.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/List.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/List.cpp [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/MetaIdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/MetaIdFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/MetaIdFilter.cpp [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/PrefixTransformer.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp:874:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp:890:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/util.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/util.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/util.cpp [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp [ 48%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/Stack.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/Stack.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/Stack.c [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SyntaxChecker.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp:638:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp:654:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp [ 48%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/StringBuffer.c [ 48%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/memory.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/ConsistencyValidator.cpp [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/IdentifierConsistencyValidator.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp:1008:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp:1024:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp:2711:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/InternalConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/InternalConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/InternalConsistencyValidator.cpp [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp:2410:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp:2426:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L1CompatibilityValidator.cpp [ 48%] Building C object src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L2v4CompatibilityValidator.cpp [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/ElementFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src 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50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/List.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/MetaIdFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/MetaIdFilter.cpp [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/ModelingPracticeValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/SBMLInternalValidator.cpp [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/util.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/util/util.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/util.cpp [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/Stack.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/Stack.c [ 50%] Building C object src/CMakeFiles/sbml.dir/sbml/util/StringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/StringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/StringBuffer.c [ 50%] Building C object src/CMakeFiles/sbml.dir/sbml/util/memory.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-o CMakeFiles/sbml.dir/sbml/util/memory.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/memory.c [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/InternalConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/InternalConsistencyValidator.cpp [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/SBOConsistencyValidator.cpp [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L2v1CompatibilityValidator.cpp [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/Validator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-o CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L2v2CompatibilityValidator.cpp [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L2v3CompatibilityValidator.cpp [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/AssignmentCycles.cpp [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L3v1CompatibilityValidator.cpp [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/CompartmentOutsideCycles.cpp [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L3v2CompatibilityValidator.cpp [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/IdBase.cpp [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/IdNameNewOnSBase.cpp [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/AssignmentCycles.cpp [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/AssignmentRuleOrdering.cpp [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/OverDeterminedCheck.cpp [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/CiElementNot0DComp.cpp [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/IdNameNewOnSBase.cpp [ 57%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsInModel.cpp [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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-c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/LambdaMathCheck.cpp [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/MathMLBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/NumericReturnMathCheck.cpp [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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CMakeFiles/sbml-static.dir/sbml/math/ASTBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTBase.cpp [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTBinaryFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbol.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbol.cpp [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-o CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/PowerUnitsCheck.cpp [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolAvogadroNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolDelayNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolDelayNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbolDelayNode.cpp [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolRateOfNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolRateOfNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbolRateOfNode.cpp [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolTimeNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbolTimeNode.cpp [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/RateOfCycles.cpp [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/ReportEmptyListOf.cpp [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCiFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCiFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCiFunctionNode.cpp [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCiNumberNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCiNumberNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCiNumberNode.cpp [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/SpeciesReactionOrRule.cpp [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCnBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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src/CMakeFiles/sbml-static.dir/sbml/math/ASTCnExponentialNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCnExponentialNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCnExponentialNode.cpp [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/StoichiometryMathVars.cpp [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdBase.cpp [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCnIntegerNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/sbml-static.dir/sbml/math/ASTCnIntegerNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCnIntegerNode.cpp [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCnRationalNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCnRationalNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCnRationalNode.cpp [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCnRealNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsInModel.cpp [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTConstantNumberNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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62%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTNode.cpp [ 62%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UnitsBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/ValidCnUnitsValue.cpp [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTNumber.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTNumber.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTNumber.cpp [ 62%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-o CMakeFiles/sbml.dir/sbml/math/ASTBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTBase.cpp [ 62%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTBinaryFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/math/ASTPiecewiseFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCSymbol.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbol.cpp [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTQualifierNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTQualifierNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTQualifierNode.cpp [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTSemanticsNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTTypes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCSymbolAvogadroNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbolAvogadroNode.cpp [ 64%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCSymbolDelayNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCSymbolDelayNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbolDelayNode.cpp [ 64%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTUnaryFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCiNumberNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCiNumberNode.cpp [ 64%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCnBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/FormulaParser.c [ 64%] Building C object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaTokenizer.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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CMakeFiles/sbml-static.dir/sbml/math/FormulaTokenizer.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/FormulaTokenizer.c [ 64%] Building C object src/CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/InputDecompressor.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/InputDecompressor.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/OutputCompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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CMakeFiles/sbml-static.dir/sbml/compress/OutputCompressor.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/OutputCompressor.cpp [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCnIntegerNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/bzfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/bzfstream.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/zfstream.cpp [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCnRationalNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/math/ASTCnRationalNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCnRationalNode.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCnRealNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCnRealNode.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-o CMakeFiles/sbml.dir/sbml/math/ASTConstantNumberNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTConstantNumberNode.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-o CMakeFiles/sbml.dir/sbml/math/ASTFunctionBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTFunctionBase.cpp [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLErrorLog.cpp [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTNaryFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/math/ASTNaryFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTNaryFunctionNode.cpp [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLLogOverride.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTNode.cpp [ 67%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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CMakeFiles/sbml-static.dir/sbml/xml/XMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNamespaces.cpp [ 67%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTPiecewiseFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTPiecewiseFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTPiecewiseFunctionNode.cpp [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTQualifierNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/math/ASTQualifierNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTQualifierNode.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function 'void XMLOutputStream::writeComment(const string&, const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: warning: '%02d' directive writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-overflow=] BUILDSTDERR: sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: note: directive argument in the range [-2147483647, 2147483647] BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /usr/include/c++/8/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/8/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/8/ios:42, BUILDSTDERR: from /usr/include/c++/8/ostream:38, BUILDSTDERR: from /usr/include/c++/8/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 14 and 60 bytes into a destination of size 17 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLParser.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/FormulaTokenizer.c [ 69%] Building C object src/CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/L3FormulaFormatter.c [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/bzfstream.cpp [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLBuffer.cpp [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/xml/XMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLConstructorException.cpp [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLLogOverride.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLLogOverride.cpp [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLFileBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/xml/XMLFileBuffer.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLFileBuffer.cpp [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLInputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLInputStream.cpp [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLMemoryBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLMemoryBuffer.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLMemoryBuffer.cpp [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/xml/XMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNamespaces.cpp [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp /usr/bin/ar q libsbml-static.a CMakeFiles/sbml-static.dir/sbml/xml/XMLErrorLog.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLLogOverride.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLFileBuffer.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLHandler.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLInputStream.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLMemoryBuffer.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLNamespaces.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLParser.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLToken.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLTokenizer.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLTriple.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLAttributes.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLHandler.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLNamespaces.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLParser.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLTranscode.cpp.o BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function 'void XMLOutputStream::writeComment(const string&, const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: warning: '%02d' directive writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-overflow=] BUILDSTDERR: sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: note: directive argument in the range [-2147483647, 2147483647] BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /usr/include/c++/8/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/8/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/8/ios:42, BUILDSTDERR: from /usr/include/c++/8/ostream:38, BUILDSTDERR: from /usr/include/c++/8/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 14 and 60 bytes into a destination of size 17 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLParser.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLParser.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLParser.cpp [ 71%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLToken.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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src/CMakeFiles/sbml.dir/sbml/xml/XMLTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLTriple.cpp [ 71%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/LibXMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/LibXMLAttributes.cpp [ 71%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/LibXMLParser.cpp [ 71%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator 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Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 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'/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestReadWriteSBase.cpp [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverter.cpp [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/test/TestExtensionObjects.cpp [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseObjects.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src && /usr/bin/cmake -E cmake_symlink_library libsbml.so.5.16.0 libsbml.so.5 libsbml.so make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 71%] Built target sbml [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/test/TestMultipleNamespaces.cpp make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_comp_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 71%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/test/TestCompConsistencyValidator.cpp [ 71%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/test/TestFile.cpp [ 71%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/test/TestValidator.cpp [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/test/TestRunner.c [ 71%] Linking CXX executable test_comp_extensions cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_extensions.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -o test_comp_extensions ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverterStripPackage.cpp [ 71%] Linking CXX executable test_comp_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -o test_comp_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningErrorMessages.cpp [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningNewFlags.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 72%] Built target test_comp_extensions [ 73%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c [ 73%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningUnknownPackageRefs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 73%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c [ 73%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c [ 73%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestPort.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestPort.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c [ 73%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestCompLevelVersionConverter.cpp make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake --color= [ 73%] Built target test_comp_validator [ 73%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c Scanning dependencies of target test_sbml_package_fbc make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 73%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp [ 73%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp [ 73%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestExternalModelResolving.cpp [ 73%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c [ 73%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestRunner.c [ 73%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c [ 74%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp [ 74%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestURIResolvers.cpp [ 74%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestRunner.c [ 74%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp [ 74%] Linking CXX executable test_comp_util cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_util.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o CMakeFiles/test_comp_util.dir/TestRunner.c.o -o test_comp_util ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 74%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test/TestRunner.c [ 74%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_fbc_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 75%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/test/TestFbcConsistencyValidator.cpp [ 75%] Linking CXX executable test_sbml_package_fbc cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_fbc.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -o test_sbml_package_fbc ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 75%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/test/TestFile.cpp [ 75%] Linking CXX executable test_comp_sbase cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_sbase.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestPort.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -o test_comp_sbase ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 75%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/test/TestValidator.cpp [ 75%] Linking CXX executable test_fbc_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fbc_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -o test_fbc_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 75%] Built target test_sbml_package_fbc make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake --color= Scanning dependencies of target test_extension_package_groups make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 76%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp [ 76%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test/TestGroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 76%] Built target test_comp_sbase make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_groups_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 76%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/test/TestFile.cpp [ 76%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/test/TestGroupsConsistencyValidator.cpp [ 76%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test/TestReadGroupsExtension.cpp [ 76%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 76%] Built target test_fbc_validator [ 76%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_package_layout make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp [ 76%] Linking CXX executable test_groups_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_groups_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_groups_validator.dir/TestFile.cpp.o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -o test_groups_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 76%] Built target test_comp_util [ 76%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test/TestRunner.c [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp [ 76%] Linking CXX executable test_extension_package_groups cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_groups.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -o test_extension_package_groups ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/utility.cpp [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestRunner.c make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake --color= [ 78%] Built target test_extension_package_groups make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend [ 78%] Built target test_groups_validator make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_multi_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' Scanning dependencies of target test_sbml_package_multi Scanning dependencies of target test_layout_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 79%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_multi_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/test/TestFile.cpp make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 79%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/test/TestFile.cpp [ 79%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test/TestCheckConsistency.cpp [ 79%] Linking CXX executable test_sbml_package_layout cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_layout.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -o test_sbml_package_layout ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 79%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common 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src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/test/TestLayoutConsistencyValidator.cpp [ 79%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test/TestMultiAST.cpp [ 79%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/test/TestValidator.cpp [ 79%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/test/TestValidator.cpp [ 79%] Linking CXX executable test_multi_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_multi_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_multi_validator.dir/TestFile.cpp.o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -o test_multi_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 79%] Linking CXX executable test_layout_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_layout_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_layout_validator.dir/TestFile.cpp.o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -o test_layout_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 79%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp [ 79%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test/TestRunner.c [ 79%] Linking CXX executable test_sbml_package_multi cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_multi.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -o test_sbml_package_multi ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 79%] Built target test_sbml_package_layout make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake --color= Scanning dependencies of target test_extension_package_qual make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 79%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test/TestGetAllElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 79%] Built target test_multi_validator make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_package_qual make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestCopyAndClone.cpp [ 79%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 79%] Built target test_layout_validator [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 79%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test/TestReadQualExtension.cpp [ 79%] Built target test_sbml_package_multi make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake --color= [ 79%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp Scanning dependencies of target test_qual_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_qual_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/test/TestFile.cpp [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/test/TestQualConsistencyValidator.cpp [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/test/TestValidator.cpp [ 79%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test/TestRunner.c [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp [ 79%] Linking CXX executable test_extension_package_qual cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_qual.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -o test_extension_package_qual ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 79%] Linking CXX executable test_qual_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_qual_validator.dir/link.txt --verbose=1 [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_qual_validator.dir/TestFile.cpp.o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -o test_qual_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 80%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp [ 80%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp [ 80%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp [ 80%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestRunner.c make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake --color= [ 80%] Linking CXX executable test_sbml_package_qual cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_qual.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -o test_sbml_package_qual ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 Scanning dependencies of target test_sbml_package_render make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 80%] Built target test_extension_package_qual [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_annotation make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestCopyAndClone.cpp [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 80%] Built target test_qual_validator [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestL3ModelHistory.cpp make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_conversion make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 81%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestConversionOption.cpp [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRDFAnnotation.cpp [ 81%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 81%] Built target test_sbml_package_qual [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp [ 81%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestInferUnitsConverter.cpp [ 81%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestLevelVersionConverter.cpp make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake --color= [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRDFAnnotationMetaid.cpp Scanning dependencies of target test_sbml_extension make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 82%] Building C object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestRunner.c [ 82%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestPackage.cpp [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestRateOfConverter.cpp [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRDFAnnotationNestedCVTerms.cpp [ 82%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBMLDocumentPlugin.cpp [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestSBMLConverterRegistry.cpp [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp [ 82%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBMLExtension.cpp [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestSBMLRuleConverter.cpp [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestSyncAnnotation.cpp [ 82%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBMLExtensionNamespaces.cpp [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestStripPackageConverter.cpp [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestValidation.cpp [ 82%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBMLExtensionRegistry.cpp [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestUnitsConverter.cpp [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestCVTerms.c [ 82%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBaseExtensionPoint.cpp [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestCVTerms_newSetters.c [ 82%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBasePlugin.cpp [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestDate_newSetters.c [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestModelCreator_newSetters.c [ 82%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBasePluginCreator.cpp [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestModelHistory.c [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestModelHistory_newSetters.c [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBasePluginCreatorBase.cpp [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestUnitsConverter2.cpp [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRDFAnnotationC.c [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestUnknownPackage.cpp [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp [ 84%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_annotation.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -o test_sbml_annotation ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 84%] Linking CXX executable test_sbml_extension cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_extension.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_extension.dir/TestRunner.c.o CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -o test_sbml_extension ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 84%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestUnitsConverterL2.cpp [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestRunner.c [ 85%] Linking CXX executable test_sbml_conversion cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_conversion.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -o test_sbml_conversion ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 85%] Built target test_sbml_annotation [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 85%] Built target test_sbml_extension make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_math make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestChildFunctions.cpp [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestGetValue.cpp [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestL3FormulaParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 85%] Built target test_sbml_conversion make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake --color= [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestNewASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestNewASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestNewASTNode.cpp [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderExtension.cpp Scanning dependencies of target test_sbml_sbml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAncestor.cpp Scanning dependencies of target test_sbml_units make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestCalculatedUnitDefinitions.cpp [ 87%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp [ 87%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestDerivedUnitDefinitions.cpp [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestFormulaUnitsData.cpp [ 88%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderReading.cpp [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAttributeFunctions.cpp [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUnitFormulaFormatter.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAttributeFunctions.cpp:40: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAttributeFunctions.cpp:1344:13: warning: 'void test_Attributes_Trigger_Id(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_Attributes_Trigger_Id) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestNewReadMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestNewReadMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestNewReadMathML.cpp [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUnitFormulaFormatter1.cpp [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestConsistencyChecks.cpp [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUnitFormulaFormatter2.cpp [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestNewWriteMathMLFromAST.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUnitFormulaFormatter3.cpp [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUtilsUnit.cpp [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadFromFile1.cpp [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestGetMultipleObjects.cpp [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadFromFile2.cpp [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUtilsUnitDefinition.cpp [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestInternalConsistencyChecks.cpp [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestRunner.c [ 88%] Linking CXX executable test_sbml_units cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_units.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -o test_sbml_units ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:1529:13: warning: 'void test_element_implies(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_implies) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:1510:13: warning: 'void test_element_rem(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_rem) BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:1491:13: warning: 'void test_element_quotient(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_quotient) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:1472:13: warning: 'void test_element_min(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_min) BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:1453:13: warning: 'void test_element_max(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_max) BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestValidASTNode.cpp [ 89%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestWriteMathML.cpp [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestLevelCompatibility.cpp [ 89%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestWriteMathMLFromAST.cpp [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile5.cpp [ 89%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestASTNode.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestASTNode.c [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile6.cpp [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile7.cpp [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile8.cpp [ 89%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestFormulaFormatter.c [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile9.cpp [ 89%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestFormulaParser.c [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp [ 90%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestFormulaTokenizer.c [ 90%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestL3FormulaFormatter.c [ 90%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestL3FormulaParserC.c [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 90%] Built target test_sbml_units make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_util make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 90%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestList.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestList.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestList.c [ 90%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestMemory.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestMemory.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestMemory.c [ 90%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestRunner.c [ 91%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestStack.c [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp [ 91%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestStringBuffer.c [ 91%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestRunner.c [ 91%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestUtil.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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CMakeFiles/test_sbml_util.dir/TestUtil.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestUtil.c [ 91%] Linking CXX executable test_sbml_math cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_math.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o CMakeFiles/test_sbml_math.dir/TestNewASTNode.cpp.o CMakeFiles/test_sbml_math.dir/TestNewReadMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestNewWriteMathMLFromAST.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -o test_sbml_math ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 91%] Linking CXX executable test_sbml_util cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_util.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_util.dir/TestList.c.o CMakeFiles/test_sbml_util.dir/TestMemory.c.o CMakeFiles/test_sbml_util.dir/TestRunner.c.o CMakeFiles/test_sbml_util.dir/TestStack.c.o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -o test_sbml_util ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 91%] Built target test_sbml_util make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 91%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test/TestConsistencyValidator.cpp [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp [ 91%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test/TestFile.cpp [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp [ 91%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test/TestValidator.cpp [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp [ 91%] Linking CXX executable test_sbml_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -o test_sbml_validator ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadSBML.cpp [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRemoveFromParent.cpp [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRenameIDs.cpp [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRequiredAttributes.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRequiredElements.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 92%] Built target test_sbml_validator [ 92%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLConvertFromL3V2.cpp make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_xml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 92%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestCopyAndClone.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLConvertStrict.cpp [ 92%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLAttributes.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLError.cpp [ 92%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLError.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLExceptions.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLParentObject.cpp [ 93%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLNode.cpp [ 93%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestRunner.c [ 93%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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-Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLAttributesC.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLTransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 93%] Built target test_sbml_math [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLValidators.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLTransforms.cpp:41: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLTransforms.cpp:787:12: warning: 'void test_SBMLTransforms_replaceIAWithFD(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST(test_SBMLTransforms_replaceIAWithFD) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend [ 93%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLErrorC.c make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 93%] Building CXX object src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_python_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig -I/builddir/build/BUILD/libSBML-5.16.0-Source/include -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/libsbml_wrap.cpp [ 93%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLErrorLog.c [ 93%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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-Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLInputStream.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLNode_newSetters.c [ 93%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLOutputStream.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBaseIdName.cpp [ 93%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLToken.c [ 93%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLToken_newSetters.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBase_newSetters.cpp [ 93%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLTriple.c [ 94%] Linking CXX executable test_sbml_xml cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_xml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -o test_sbml_xml ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestWriteL3SBML.cpp [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestWriteL3V2SBML.cpp [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestWriteSBML.cpp [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAlgebraicRule.c [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAssignmentRule.c BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:76: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp: In function 'void test_RenderWriting_write_model_1(int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:137:13: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without BUILDSTDERR: START_TEST (test_RenderWriting_write_model_1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestCompartment.c [ 95%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestCompartmentType.c [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestCompartmentType_newSetters.c [ 95%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestCompartmentVolumeRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 95%] Built target test_sbml_xml [ 95%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestCompartment_newSetters.c [ 95%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRunner.c [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestConstraint.c [ 95%] Linking CXX executable test_sbml_package_render cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_render.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -o test_sbml_package_render ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestConstraint_newSetters.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestDelay.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestEvent.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestEventAssignment.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestEventAssignment_newSetters.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestEvent_newSetters.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestFunctionDefinition.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestInitialAssignment.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestKineticLaw.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestKineticLaw_newSetters.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Compartment.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Event.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3KineticLaw.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3LocalParameter.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Model.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Parameter.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Reaction.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Species.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3SpeciesReference.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Trigger.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Unit.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestListOf.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModel.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestModel.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestModel_newSetters.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestModifierSpeciesReference.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestParameter.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestParameterRule.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestParameter_newSetters.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestPriority.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRateRule.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReaction.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReaction_newSetters.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile1.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile2.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile3.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile4.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRule.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRule_newSetters.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRunner.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLConvert.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLDocument.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpecies.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpeciesReference.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpeciesType.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpeciesType_newSetters.c [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpecies_newSetters.c [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestStoichiometryMath.c [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSyntaxChecker.c [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestTrigger.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [100%] Built target test_sbml_package_render [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestUnit.c [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestUnitDefinition.c [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestUnitKind.c [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o CMakeFiles/test_sbml_sbml.dir/TestRule.c.o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -o test_sbml_sbml ../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [100%] Built target test_sbml_sbml [100%] Linking CXX shared library _libsbml.so cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,_libsbml.so -o _libsbml.so CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lpython2.7 -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [100%] Built target binding_python_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.16.0-Source/build2/CMakeFiles 0 ~/build/BUILD/libSBML-5.16.0-Source/build ~/build/BUILD/libSBML-5.16.0-Source/build2 ~/build/BUILD/libSBML-5.16.0-Source + pushd ../build + export 'LDFLAGS=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed' + export 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_PYTHON:BOOL=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.6m -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.6m.so -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DWITH_PERL:BOOL=ON -DPERL_EXECUTABLE:FILEPATH=/usr/bin/perl -DPERL_INCLUDE_PATH:PATH=/usr/lib64/perl5/CORE -DPERL_LIBRARY:FILEPATH=/usr/lib64/libperl.so -DWITH_RUBY:BOOL=ON -DRUBY_SITEARCH_DIR:PATH=/usr/local/lib64/ruby/site_ruby -DRUBY_SITELIB_DIR:PATH=/usr/local/share/ruby/site_ruby -DRUBY_VENDORARCH_DIR:PATH=/usr/lib64/ruby/vendor_ruby -DRUBY_VENDORLIB_DIR:PATH=/usr/share/ruby/vendor_ruby -DRUBY_HAS_VENDOR_RUBY:BOOL=ON -DWITH_JAVA:BOOL=ON -DWITH_JAVASCRIPT:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DWITH_CHECK=ON -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DWITH_MATLAB:BOOL=OFF -Wno-dev -DEXIT_ON_ERROR:BOOL=ON .. -- The C compiler identification is GNU 8.1.1 -- The CXX compiler identification is GNU 8.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "3.0.12") -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Found PkgConfig: /usr/bin/pkg-config (found version "1.4.2") -- Checking for module 'minizip' -- Found minizip, version 1.2.11 -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found JNI: /usr/lib/jvm/jre/lib/riscv64/libjawt.so -- Found Java: /usr/bin/java (found version "1.8.0.144") found components: Development -- Found PythonInterp: /usr/bin/python3 (found version "3.6.5") -- Found Perl: /usr/bin/perl (found version "5.26.2") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.26.2") -- Found PythonLibs: /usr/lib64/libpython3.6m.so (found version "3.6.5") -- Found Ruby: /usr/bin/ruby (found version "2.5.1") -- ---------------------------------------------------------------------- libSBML version 5.16.0 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/Software/libsbml/issue-tracker To contact the developers directly, email libsbml-team@googlegroups.com Configured on host 'five.home.annexia.org' host type = Linux host operating system = Linux 4.15.0-00044-g2b0aa1de45f6-dirty host CPU architecture = riscv64 General build flags: CC = /usr/bin/cc CXX = /usr/bin/c++ CPPFLAGS = -DLINUX CFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib64/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig (Version 3.0.12) -- Using Java = /usr/bin/java -- Using Python = /usr/bin/python3 -- Using Perl = /usr/bin/perl -- Using Ruby = /usr/bin/ruby -- Using R = /usr/bin/R -- Using libcheck = /usr/lib64/libcheck.so -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- Use Legacy Math = no -- -- Support for SBML Level 3 Packages: -- SBML 'comp' package = ON -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done -- Generating done BUILDSTDERR: CMake Warning: BUILDSTDERR: Manually-specified variables were not used by the project: BUILDSTDERR: CMAKE_Fortran_FLAGS_RELEASE BUILDSTDERR: CMAKE_SKIP_INSTALL_RPATH BUILDSTDERR: CSHARP_COMPILER BUILDSTDERR: INCLUDE_INSTALL_DIR BUILDSTDERR: LIB_SUFFIX BUILDSTDERR: SHARE_INSTALL_PREFIX BUILDSTDERR: SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libSBML-5.16.0-Source/build + make -j4 /usr/bin/cmake -H/builddir/build/BUILD/libSBML-5.16.0-Source -B/builddir/build/BUILD/libSBML-5.16.0-Source/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.16.0-Source/build/CMakeFiles /builddir/build/BUILD/libSBML-5.16.0-Source/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make -f src/bindings/java/CMakeFiles/binding_java_swig.dir/build.make src/bindings/java/CMakeFiles/binding_java_swig.dir/depend make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java/CMakeFiles/binding_java_swig.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_java_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/java/CMakeFiles/binding_java_swig.dir/build.make src/bindings/java/CMakeFiles/binding_java_swig.dir/build Scanning dependencies of target binding_perl_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/CMakeFiles/sbml.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/CMakeFiles/sbml-static.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 0%] Swig Java source cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="--define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_MULTI --define USE_QUAL --define USE_RENDER" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DWITH_DOXYGEN="OFF" -DLIB_NAME="" -P /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java/swig-binding.cmake [ 0%] Swig Perl bindings source cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/perl/../swig/swigdoc.py --language perl --top /builddir/build/BUILD/libSBML-5.16.0-Source --master /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/perl/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl/LibSBML.pod --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_MULTI --define USE_QUAL --define USE_RENDER BUILDSTDERR: Swig: Java Bindings Scanning dependencies of target sbml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build Scanning dependencies of target sbml-static make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.cpp make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.cpp [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:309:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:450:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:309:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:450:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/perl/../swig/ -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/include -c++ -perl5 -proxy -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl/LibSBML_wrap.cpp /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/perl/LibSBML.i BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLInputStream.h:232: Warning 314: 'next' is a perl keyword [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:66, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:389:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:520:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:66, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:389:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:520:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:164:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:360:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:434:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:541:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:164:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:360:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:434:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:541:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTBase.h:127: Warning 509: Overloaded method ASTBase::setType(int) effectively ignored, BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTBase.h:125: Warning 509: as it is shadowed by ASTBase::setType(ASTNodeType_t). [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 2%] Built target binding_java_swig [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 2%] Swig Python source cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.16.0-Source --master /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/pydoc-doxygen.i --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_MULTI --define USE_QUAL --define USE_RENDER BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:158:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 2%] Built target binding_perl_swig make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake --color= [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp Scanning dependencies of target binding_ruby_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 2%] Swig Ruby source cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/ruby/../swig/ -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/include -c++ -ruby -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/ruby/libsbml.i BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:158:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:114:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:151:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Port.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:114:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:150:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/generate-class-name-list.py /builddir/build/BUILD/libSBML-5.16.0-Source/src > /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/class-list.txt [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Port.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/generate-converters-list.py /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/class-list.txt > /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/libsbml-converters.txt cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py -f /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/pydoc-doxygen.i -o /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/pydoc-normal.i -i /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../../../docs/src/common-text -g /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../../../docs/src/common-graphics [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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[ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:548:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:658:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:669:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:39: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:493:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:548:5: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:658:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:669:7: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp Warning: unable to expand @htmlinclude 'pkg-marker-render.html' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-doxygen.i pydoc.i cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/include -DGENERATING_DOCS -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/libsbml.i BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/ruby/../swig/render-package.i:88: Warning 801: Wrong class name (corrected to `Double_array') BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/ruby/../swig/render-package.i:88: Warning 801: Wrong class name (corrected to `Double_array') BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/ruby/../swig/render-package.i:89: Warning 801: Wrong class name (corrected to `Int_array') BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/ruby/../swig/render-package.i:89: Warning 801: Wrong class name (corrected to `Int_array') make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 4%] Built target binding_ruby_swig [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:39: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:493:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_r_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 4%] Swig: R Bindings cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DLIBSBML_REMOVE_WRAPPERS=OFF -P /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r/swig-binding.cmake [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints 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src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/CompValidator.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:281:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:320:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLInputStream.h:232: Warning 314: 'next' is a R keyword, renaming to '_next' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML.R" -P /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r/patch-swig-file.cmake [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp -- Patched libSBML.R cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libsbml_wrap.cpp" -P /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r/patch-swig-file.cmake -- Patched libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 5%] Built target binding_r_swig make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/DependInfo.cmake --color= Scanning dependencies of target binding_java_jar make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 5%] Building: libsbml.jar cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java && /usr/bin/cmake -E make_directory /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java/test cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java && /usr/bin/cmake -DJava_JAVAC_EXECUTABLE="/usr/bin/javac" -DJava_JAR_EXECUTABLE="/usr/bin/jar" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java" -DFILE_SEP=":" -DPATH_SEP=/ -DCOMPATIBILIY=1.6 -P /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java/compile-native-files.cmake BUILDSTDERR: Creating: libsbml.jar [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:141, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:193:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:847:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1112:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1292:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1497:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:144:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:442:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Association.cpp [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:296:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:333:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:370:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:101, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:972:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1009:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1046:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1142:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1150:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1158:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1166:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:308:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:345:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:382:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:121, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1252:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1166:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1262:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-doxygen.i cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename libsbml.py libsbml-doxygen.py cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-normal.i pydoc.i cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/include -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/libsbml.i BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:346:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:695:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:85, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1172:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1268:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:92, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:208:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:223:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:238:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:986:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.h:130, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:468:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1439:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1558:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp added manifest adding: org/sbml/libsbml/ASTBase.class(in = 12613) (out= 3664)(deflated 70%) adding: org/sbml/libsbml/ASTBasePlugin.class(in = 10538) (out= 3052)(deflated 71%) adding: org/sbml/libsbml/ASTNode.class(in = 16109) (out= 4850)(deflated 69%) adding: org/sbml/libsbml/ASTNodeList.class(in = 1591) (out= 759)(deflated 52%) adding: org/sbml/libsbml/AlgebraicRule.class(in = 1833) (out= 891)(deflated 51%) adding: org/sbml/libsbml/AssignmentRule.class(in = 2073) (out= 964)(deflated 53%) adding: org/sbml/libsbml/Association.class(in = 5300) (out= 1814)(deflated 65%) adding: org/sbml/libsbml/BindingSiteSpeciesType.class(in = 3131) (out= 1197)(deflated 61%) adding: org/sbml/libsbml/BoundingBox.class(in = 7249) (out= 2373)(deflated 67%) adding: org/sbml/libsbml/CVTerm.class(in = 4773) (out= 1725)(deflated 63%) adding: org/sbml/libsbml/CVTermList.class(in = 1573) (out= 757)(deflated 51%) adding: org/sbml/libsbml/CobraToFbcConverter.class(in = 2314) (out= 996)(deflated 56%) adding: org/sbml/libsbml/ColorDefinition.class(in = 6591) (out= 2129)(deflated 67%) adding: org/sbml/libsbml/CompBase.class(in = 1541) (out= 780)(deflated 49%) adding: org/sbml/libsbml/CompExtension.class(in = 5884) (out= 2364)(deflated 59%) adding: org/sbml/libsbml/CompFlatteningConverter.class(in = 2329) (out= 981)(deflated 57%) adding: org/sbml/libsbml/CompModelPlugin.class(in = 6844) (out= 2194)(deflated 67%) adding: org/sbml/libsbml/CompPkgNamespaces.class(in = 2403) (out= 1051)(deflated 56%) adding: org/sbml/libsbml/CompSBMLDocumentPlugin.class(in = 8025) (out= 2288)(deflated 71%) adding: org/sbml/libsbml/CompSBasePlugin.class(in = 5669) (out= 1827)(deflated 67%) adding: org/sbml/libsbml/Compartment.class(in = 6893) (out= 2203)(deflated 68%) adding: org/sbml/libsbml/CompartmentGlyph.class(in = 4976) (out= 1683)(deflated 66%) adding: org/sbml/libsbml/CompartmentReference.class(in = 4562) (out= 1551)(deflated 66%) adding: org/sbml/libsbml/CompartmentType.class(in = 3015) (out= 1193)(deflated 60%) adding: org/sbml/libsbml/Constraint.class(in = 4385) (out= 1590)(deflated 63%) adding: org/sbml/libsbml/ConversionOption.class(in = 5628) (out= 1690)(deflated 69%) adding: org/sbml/libsbml/ConversionProperties.class(in = 8189) (out= 2121)(deflated 74%) adding: org/sbml/libsbml/CubicBezier.class(in = 6224) (out= 2043)(deflated 67%) adding: org/sbml/libsbml/Curve.class(in = 4519) (out= 1735)(deflated 61%) adding: org/sbml/libsbml/Date.class(in = 4822) (out= 1836)(deflated 61%) adding: org/sbml/libsbml/DateList.class(in = 1537) (out= 754)(deflated 50%) adding: org/sbml/libsbml/DefaultTerm.class(in = 3246) (out= 1288)(deflated 60%) adding: org/sbml/libsbml/DefaultValues.class(in = 17596) (out= 4162)(deflated 76%) adding: org/sbml/libsbml/Delay.class(in = 3652) (out= 1458)(deflated 60%) adding: org/sbml/libsbml/Deletion.class(in = 3160) (out= 1280)(deflated 59%) adding: org/sbml/libsbml/Dimensions.class(in = 5207) (out= 1874)(deflated 64%) adding: org/sbml/libsbml/ElementFilter.class(in = 1717) (out= 851)(deflated 50%) adding: org/sbml/libsbml/Ellipse.class(in = 8406) (out= 2233)(deflated 73%) adding: org/sbml/libsbml/Event.class(in = 8564) (out= 2716)(deflated 68%) adding: org/sbml/libsbml/EventAssignment.class(in = 4839) (out= 1691)(deflated 65%) adding: org/sbml/libsbml/ExternalModelDefinition.class(in = 5102) (out= 1657)(deflated 67%) adding: org/sbml/libsbml/FbcAnd.class(in = 5110) (out= 1854)(deflated 63%) adding: org/sbml/libsbml/FbcAssociation.class(in = 4373) (out= 1526)(deflated 65%) adding: org/sbml/libsbml/FbcExtension.class(in = 6304) (out= 2546)(deflated 59%) adding: org/sbml/libsbml/FbcModelPlugin.class(in = 12134) (out= 3287)(deflated 72%) adding: org/sbml/libsbml/FbcOr.class(in = 5070) (out= 1852)(deflated 63%) adding: org/sbml/libsbml/FbcPkgNamespaces.class(in = 2385) (out= 1051)(deflated 55%) adding: org/sbml/libsbml/FbcReactionPlugin.class(in = 6091) (out= 1861)(deflated 69%) adding: org/sbml/libsbml/FbcSBMLDocumentPlugin.class(in = 1960) (out= 906)(deflated 53%) adding: org/sbml/libsbml/FbcSpeciesPlugin.class(in = 4767) (out= 1601)(deflated 66%) adding: org/sbml/libsbml/FbcToCobraConverter.class(in = 2144) (out= 946)(deflated 55%) adding: org/sbml/libsbml/FbcV1ToV2Converter.class(in = 2278) (out= 985)(deflated 56%) adding: org/sbml/libsbml/FbcV2ToV1Converter.class(in = 2128) (out= 946)(deflated 55%) adding: org/sbml/libsbml/FluxBound.class(in = 5100) (out= 1785)(deflated 65%) adding: org/sbml/libsbml/FluxObjective.class(in = 4785) (out= 1663)(deflated 65%) adding: org/sbml/libsbml/FunctionDefinition.class(in = 4850) (out= 1642)(deflated 66%) adding: org/sbml/libsbml/FunctionTerm.class(in = 4233) (out= 1567)(deflated 62%) adding: org/sbml/libsbml/GeneAssociation.class(in = 4684) (out= 1628)(deflated 65%) adding: org/sbml/libsbml/GeneProduct.class(in = 4633) (out= 1639)(deflated 64%) adding: org/sbml/libsbml/GeneProductAssociation.class(in = 6209) (out= 1975)(deflated 68%) adding: org/sbml/libsbml/GeneProductRef.class(in = 4689) (out= 1625)(deflated 65%) adding: org/sbml/libsbml/GeneralGlyph.class(in = 8733) (out= 2710)(deflated 68%) adding: org/sbml/libsbml/GlobalRenderInformation.class(in = 4893) (out= 1674)(deflated 65%) adding: org/sbml/libsbml/GlobalStyle.class(in = 2876) (out= 1176)(deflated 59%) adding: org/sbml/libsbml/GradientBase.class(in = 4465) (out= 1663)(deflated 62%) adding: org/sbml/libsbml/GradientStop.class(in = 3959) (out= 1511)(deflated 61%) adding: org/sbml/libsbml/GraphicalObject.class(in = 6884) (out= 2188)(deflated 68%) adding: org/sbml/libsbml/GraphicalPrimitive1D.class(in = 3710) (out= 1294)(deflated 65%) adding: org/sbml/libsbml/GraphicalPrimitive2D.class(in = 2165) (out= 927)(deflated 57%) adding: org/sbml/libsbml/Group.class(in = 6023) (out= 2131)(deflated 64%) adding: org/sbml/libsbml/GroupsExtension.class(in = 4897) (out= 1971)(deflated 59%) adding: org/sbml/libsbml/GroupsModelPlugin.class(in = 4640) (out= 1615)(deflated 65%) adding: org/sbml/libsbml/GroupsPkgNamespaces.class(in = 2439) (out= 1053)(deflated 56%) adding: org/sbml/libsbml/ISBMLExtensionNamespaces.class(in = 1574) (out= 727)(deflated 53%) adding: org/sbml/libsbml/IdList.class(in = 1776) (out= 832)(deflated 53%) adding: org/sbml/libsbml/IdentifierTransformer.class(in = 1830) (out= 866)(deflated 52%) adding: org/sbml/libsbml/Image.class(in = 5812) (out= 2024)(deflated 65%) adding: org/sbml/libsbml/InSpeciesTypeBond.class(in = 4909) (out= 1642)(deflated 66%) adding: org/sbml/libsbml/InitialAssignment.class(in = 4899) (out= 1700)(deflated 65%) adding: org/sbml/libsbml/Input.class(in = 5282) (out= 1838)(deflated 65%) adding: org/sbml/libsbml/IntraSpeciesReaction.class(in = 3069) (out= 1189)(deflated 61%) adding: org/sbml/libsbml/KineticLaw.class(in = 9312) (out= 2838)(deflated 69%) adding: org/sbml/libsbml/L3ParserSettings.class(in = 5530) (out= 1779)(deflated 67%) adding: org/sbml/libsbml/Layout.class(in = 14495) (out= 4000)(deflated 72%) adding: org/sbml/libsbml/LayoutExtension.class(in = 7766) (out= 2949)(deflated 62%) adding: org/sbml/libsbml/LayoutModelPlugin.class(in = 3890) (out= 1390)(deflated 64%) adding: org/sbml/libsbml/LayoutPkgNamespaces.class(in = 2439) (out= 1053)(deflated 56%) adding: org/sbml/libsbml/LayoutSpeciesReferencePlugin.class(in = 1720) (out= 803)(deflated 53%) adding: org/sbml/libsbml/LineEnding.class(in = 5310) (out= 1915)(deflated 63%) adding: org/sbml/libsbml/LineSegment.class(in = 5596) (out= 1959)(deflated 64%) adding: org/sbml/libsbml/LinearGradient.class(in = 5746) (out= 1720)(deflated 70%) adding: org/sbml/libsbml/ListOf.class(in = 4932) (out= 1815)(deflated 63%) adding: org/sbml/libsbml/ListOfColorDefinitions.class(in = 4025) (out= 1426)(deflated 64%) adding: org/sbml/libsbml/ListOfCompartmentGlyphs.class(in = 3662) (out= 1340)(deflated 63%) adding: org/sbml/libsbml/ListOfCompartmentReferences.class(in = 3704) (out= 1302)(deflated 64%) adding: org/sbml/libsbml/ListOfCompartmentTypes.class(in = 3092) (out= 1173)(deflated 62%) adding: org/sbml/libsbml/ListOfCompartments.class(in = 3000) (out= 1170)(deflated 61%) adding: org/sbml/libsbml/ListOfConstraints.class(in = 2593) (out= 1092)(deflated 57%) adding: org/sbml/libsbml/ListOfCurveElements.class(in = 3880) (out= 1441)(deflated 62%) adding: org/sbml/libsbml/ListOfDeletions.class(in = 3134) (out= 1221)(deflated 61%) adding: org/sbml/libsbml/ListOfDrawables.class(in = 3598) (out= 1354)(deflated 62%) adding: org/sbml/libsbml/ListOfEventAssignments.class(in = 3347) (out= 1251)(deflated 62%) adding: org/sbml/libsbml/ListOfEvents.class(in = 2862) (out= 1162)(deflated 59%) adding: org/sbml/libsbml/ListOfExternalModelDefinitions.class(in = 3509) (out= 1241)(deflated 64%) adding: org/sbml/libsbml/ListOfFbcAssociations.class(in = 4565) (out= 1586)(deflated 65%) adding: org/sbml/libsbml/ListOfFluxBounds.class(in = 3297) (out= 1259)(deflated 61%) adding: org/sbml/libsbml/ListOfFluxObjectives.class(in = 4116) (out= 1436)(deflated 65%) adding: org/sbml/libsbml/ListOfFunctionDefinitions.class(in = 3161) (out= 1177)(deflated 62%) adding: org/sbml/libsbml/ListOfFunctionTerms.class(in = 4376) (out= 1513)(deflated 65%) adding: org/sbml/libsbml/ListOfGeneAssociations.class(in = 3453) (out= 1267)(deflated 63%) adding: org/sbml/libsbml/ListOfGeneProducts.class(in = 4034) (out= 1436)(deflated 64%) adding: org/sbml/libsbml/ListOfGlobalRenderInformation.class(in = 7035) (out= 2098)(deflated 70%) adding: org/sbml/libsbml/ListOfGlobalStyles.class(in = 4009) (out= 1440)(deflated 64%) adding: org/sbml/libsbml/ListOfGradientDefinitions.class(in = 4387) (out= 1509)(deflated 65%) adding: org/sbml/libsbml/ListOfGradientStops.class(in = 3576) (out= 1352)(deflated 62%) adding: org/sbml/libsbml/ListOfGraphicalObjects.class(in = 3791) (out= 1380)(deflated 63%) adding: org/sbml/libsbml/ListOfGroups.class(in = 3950) (out= 1463)(deflated 62%) adding: org/sbml/libsbml/ListOfInSpeciesTypeBonds.class(in = 3623) (out= 1301)(deflated 64%) adding: org/sbml/libsbml/ListOfInitialAssignments.class(in = 3395) (out= 1254)(deflated 63%) adding: org/sbml/libsbml/ListOfInputs.class(in = 3346) (out= 1295)(deflated 61%) adding: org/sbml/libsbml/ListOfLayouts.class(in = 3597) (out= 1373)(deflated 61%) adding: org/sbml/libsbml/ListOfLineEndings.class(in = 4051) (out= 1458)(deflated 64%) adding: org/sbml/libsbml/ListOfLineSegments.class(in = 3152) (out= 1262)(deflated 59%) adding: org/sbml/libsbml/ListOfLocalParameters.class(in = 3697) (out= 1313)(deflated 64%) adding: org/sbml/libsbml/ListOfLocalRenderInformation.class(in = 6710) (out= 2012)(deflated 70%) adding: org/sbml/libsbml/ListOfLocalStyles.class(in = 3978) (out= 1441)(deflated 63%) adding: org/sbml/libsbml/ListOfMembers.class(in = 5114) (out= 1763)(deflated 65%) adding: org/sbml/libsbml/ListOfModelDefinitions.class(in = 3309) (out= 1227)(deflated 62%) adding: org/sbml/libsbml/ListOfMultiSpeciesTypes.class(in = 3543) (out= 1295)(deflated 63%) adding: org/sbml/libsbml/ListOfObjectives.class(in = 5192) (out= 1717)(deflated 66%) adding: org/sbml/libsbml/ListOfOutputs.class(in = 3373) (out= 1296)(deflated 61%) adding: org/sbml/libsbml/ListOfOutwardBindingSites.class(in = 3650) (out= 1301)(deflated 64%) adding: org/sbml/libsbml/ListOfParameters.class(in = 2954) (out= 1166)(deflated 60%) adding: org/sbml/libsbml/ListOfPorts.class(in = 3278) (out= 1299)(deflated 60%) adding: org/sbml/libsbml/ListOfPossibleSpeciesFeatureValues.class(in = 3893) (out= 1313)(deflated 66%) adding: org/sbml/libsbml/ListOfQualitativeSpecies.class(in = 3361) (out= 1236)(deflated 63%) adding: org/sbml/libsbml/ListOfReactionGlyphs.class(in = 3581) (out= 1337)(deflated 62%) adding: org/sbml/libsbml/ListOfReactions.class(in = 2878) (out= 1153)(deflated 59%) adding: org/sbml/libsbml/ListOfReferenceGlyphs.class(in = 3608) (out= 1342)(deflated 62%) adding: org/sbml/libsbml/ListOfReplacedElements.class(in = 2905) (out= 1164)(deflated 59%) adding: org/sbml/libsbml/ListOfRules.class(in = 2943) (out= 1190)(deflated 59%) adding: org/sbml/libsbml/ListOfSpecies.class(in = 2888) (out= 1165)(deflated 59%) adding: org/sbml/libsbml/ListOfSpeciesFeatureTypes.class(in = 3650) (out= 1297)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesFeatureValues.class(in = 3677) (out= 1300)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesFeatures.class(in = 5453) (out= 1695)(deflated 68%) adding: org/sbml/libsbml/ListOfSpeciesGlyphs.class(in = 3554) (out= 1333)(deflated 62%) adding: org/sbml/libsbml/ListOfSpeciesReferenceGlyphs.class(in = 3797) (out= 1352)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesReferences.class(in = 3187) (out= 1202)(deflated 62%) adding: org/sbml/libsbml/ListOfSpeciesTypeComponentIndexes.class(in = 3705) (out= 1275)(deflated 65%) adding: org/sbml/libsbml/ListOfSpeciesTypeComponentMapInProducts.class(in = 4028) (out= 1317)(deflated 67%) adding: org/sbml/libsbml/ListOfSpeciesTypeInstances.class(in = 3677) (out= 1298)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesTypes.class(in = 3000) (out= 1167)(deflated 61%) adding: org/sbml/libsbml/ListOfSubmodels.class(in = 3134) (out= 1224)(deflated 60%) adding: org/sbml/libsbml/ListOfTextGlyphs.class(in = 3473) (out= 1335)(deflated 61%) adding: org/sbml/libsbml/ListOfTransitions.class(in = 3327) (out= 1255)(deflated 62%) adding: org/sbml/libsbml/ListOfUnitDefinitions.class(in = 3323) (out= 1246)(deflated 62%) adding: org/sbml/libsbml/ListOfUnits.class(in = 2479) (out= 1087)(deflated 56%) adding: org/sbml/libsbml/LocalParameter.class(in = 3273) (out= 1250)(deflated 61%) adding: org/sbml/libsbml/LocalRenderInformation.class(in = 4851) (out= 1664)(deflated 65%) adding: org/sbml/libsbml/LocalStyle.class(in = 4035) (out= 1536)(deflated 61%) adding: org/sbml/libsbml/MathFilter.class(in = 1180) (out= 660)(deflated 44%) adding: org/sbml/libsbml/MathML.class(in = 1286) (out= 694)(deflated 46%) adding: org/sbml/libsbml/Member.class(in = 4572) (out= 1689)(deflated 63%) adding: org/sbml/libsbml/Model.class(in = 35409) (out= 9163)(deflated 74%) adding: org/sbml/libsbml/ModelCreator.class(in = 5096) (out= 1716)(deflated 66%) adding: org/sbml/libsbml/ModelCreatorList.class(in = 1681) (out= 762)(deflated 54%) adding: org/sbml/libsbml/ModelDefinition.class(in = 2707) (out= 1111)(deflated 58%) adding: org/sbml/libsbml/ModelHistory.class(in = 4260) (out= 1534)(deflated 63%) adding: org/sbml/libsbml/ModifierSpeciesReference.class(in = 2183) (out= 967)(deflated 55%) adding: org/sbml/libsbml/MultiASTPlugin.class(in = 5653) (out= 1792)(deflated 68%) adding: org/sbml/libsbml/MultiCompartmentPlugin.class(in = 5989) (out= 1814)(deflated 69%) adding: org/sbml/libsbml/MultiExtension.class(in = 7320) (out= 2847)(deflated 61%) adding: org/sbml/libsbml/MultiListOfReactionsPlugin.class(in = 2446) (out= 1015)(deflated 58%) adding: org/sbml/libsbml/MultiModelPlugin.class(in = 4882) (out= 1632)(deflated 66%) adding: org/sbml/libsbml/MultiPkgNamespaces.class(in = 2421) (out= 1052)(deflated 56%) adding: org/sbml/libsbml/MultiSBMLDocumentPlugin.class(in = 1994) (out= 909)(deflated 54%) adding: org/sbml/libsbml/MultiSimpleSpeciesReferencePlugin.class(in = 3873) (out= 1286)(deflated 66%) adding: org/sbml/libsbml/MultiSpeciesPlugin.class(in = 8318) (out= 2323)(deflated 72%) adding: org/sbml/libsbml/MultiSpeciesReferencePlugin.class(in = 5222) (out= 1584)(deflated 69%) adding: org/sbml/libsbml/MultiSpeciesType.class(in = 11919) (out= 3139)(deflated 73%) adding: org/sbml/libsbml/OFStream.class(in = 1741) (out= 830)(deflated 52%) adding: org/sbml/libsbml/OStream.class(in = 1457) (out= 799)(deflated 45%) adding: org/sbml/libsbml/OStringStream.class(in = 1283) (out= 682)(deflated 46%) adding: org/sbml/libsbml/Objective.class(in = 6124) (out= 2051)(deflated 66%) adding: org/sbml/libsbml/Output.class(in = 4964) (out= 1748)(deflated 64%) adding: org/sbml/libsbml/OutwardBindingSite.class(in = 4987) (out= 1667)(deflated 66%) adding: org/sbml/libsbml/Parameter.class(in = 4878) (out= 1744)(deflated 64%) adding: org/sbml/libsbml/Point.class(in = 5465) (out= 1969)(deflated 63%) adding: org/sbml/libsbml/Polygon.class(in = 4559) (out= 1740)(deflated 61%) adding: org/sbml/libsbml/Port.class(in = 3665) (out= 1459)(deflated 60%) adding: org/sbml/libsbml/PossibleSpeciesFeatureValue.class(in = 4836) (out= 1575)(deflated 67%) adding: org/sbml/libsbml/Priority.class(in = 3365) (out= 1353)(deflated 59%) adding: org/sbml/libsbml/QualExtension.class(in = 5334) (out= 2188)(deflated 58%) adding: org/sbml/libsbml/QualModelPlugin.class(in = 6593) (out= 2037)(deflated 69%) adding: org/sbml/libsbml/QualPkgNamespaces.class(in = 2403) (out= 1051)(deflated 56%) adding: org/sbml/libsbml/QualitativeSpecies.class(in = 5893) (out= 1861)(deflated 68%) adding: org/sbml/libsbml/RDFAnnotationParser.class(in = 5017) (out= 1521)(deflated 69%) adding: org/sbml/libsbml/RadialGradient.class(in = 6078) (out= 1780)(deflated 70%) adding: org/sbml/libsbml/RateRule.class(in = 1989) (out= 958)(deflated 51%) adding: org/sbml/libsbml/Reaction.class(in = 11565) (out= 3248)(deflated 71%) adding: org/sbml/libsbml/ReactionGlyph.class(in = 7761) (out= 2463)(deflated 68%) adding: org/sbml/libsbml/Rectangle.class(in = 7617) (out= 2237)(deflated 70%) adding: org/sbml/libsbml/ReferenceGlyph.class(in = 6368) (out= 2143)(deflated 66%) adding: org/sbml/libsbml/RelAbsVector.class(in = 2606) (out= 1032)(deflated 60%) adding: org/sbml/libsbml/RenderCubicBezier.class(in = 6923) (out= 1948)(deflated 71%) adding: org/sbml/libsbml/RenderCurve.class(in = 5865) (out= 2053)(deflated 64%) adding: org/sbml/libsbml/RenderExtension.class(in = 7457) (out= 2906)(deflated 61%) adding: org/sbml/libsbml/RenderGraphicalObjectPlugin.class(in = 3417) (out= 1199)(deflated 64%) adding: org/sbml/libsbml/RenderGroup.class(in = 8751) (out= 2801)(deflated 67%) adding: org/sbml/libsbml/RenderInformationBase.class(in = 9064) (out= 2476)(deflated 72%) adding: org/sbml/libsbml/RenderLayoutPlugin.class(in = 5038) (out= 1621)(deflated 67%) adding: org/sbml/libsbml/RenderListOfLayoutsPlugin.class(in = 4953) (out= 1557)(deflated 68%) adding: org/sbml/libsbml/RenderPkgNamespaces.class(in = 2439) (out= 1053)(deflated 56%) adding: org/sbml/libsbml/RenderPoint.class(in = 6023) (out= 1895)(deflated 68%) adding: org/sbml/libsbml/ReplacedBy.class(in = 2711) (out= 1154)(deflated 57%) adding: org/sbml/libsbml/ReplacedElement.class(in = 4136) (out= 1484)(deflated 64%) adding: org/sbml/libsbml/Replacing.class(in = 2454) (out= 1018)(deflated 58%) adding: org/sbml/libsbml/Rule.class(in = 5603) (out= 2032)(deflated 63%) adding: org/sbml/libsbml/SBMLConstructorException.class(in = 1861) (out= 836)(deflated 55%) adding: org/sbml/libsbml/SBMLConverter.class(in = 4793) (out= 1649)(deflated 65%) adding: org/sbml/libsbml/SBMLConverterRegistry.class(in = 2188) (out= 889)(deflated 59%) adding: org/sbml/libsbml/SBMLDocument.class(in = 13286) (out= 3833)(deflated 71%) adding: org/sbml/libsbml/SBMLDocumentPlugin.class(in = 2433) (out= 1028)(deflated 57%) adding: org/sbml/libsbml/SBMLError.class(in = 2561) (out= 1017)(deflated 60%) adding: org/sbml/libsbml/SBMLErrorLog.class(in = 6193) (out= 1879)(deflated 69%) adding: org/sbml/libsbml/SBMLExtension.class(in = 5494) (out= 1822)(deflated 66%) adding: org/sbml/libsbml/SBMLExtensionException.class(in = 982) (out= 580)(deflated 40%) adding: org/sbml/libsbml/SBMLExtensionRegistry.class(in = 4294) (out= 1474)(deflated 65%) adding: org/sbml/libsbml/SBMLExternalValidator.class(in = 2954) (out= 1111)(deflated 62%) adding: org/sbml/libsbml/SBMLFileResolver.class(in = 2733) (out= 1076)(deflated 60%) adding: org/sbml/libsbml/SBMLFunctionDefinitionConverter.class(in = 2336) (out= 952)(deflated 59%) adding: org/sbml/libsbml/SBMLIdConverter.class(in = 2080) (out= 937)(deflated 54%) adding: org/sbml/libsbml/SBMLInferUnitsConverter.class(in = 2208) (out= 948)(deflated 57%) adding: org/sbml/libsbml/SBMLInitialAssignmentConverter.class(in = 2320) (out= 957)(deflated 58%) adding: org/sbml/libsbml/SBMLLevel1Version1Converter.class(in = 2272) (out= 953)(deflated 58%) adding: org/sbml/libsbml/SBMLLevelVersionConverter.class(in = 2779) (out= 1078)(deflated 61%) adding: org/sbml/libsbml/SBMLLocalParameterConverter.class(in = 2272) (out= 953)(deflated 58%) adding: org/sbml/libsbml/SBMLNamespaces.class(in = 5740) (out= 1964)(deflated 65%) adding: org/sbml/libsbml/SBMLNamespacesList.class(in = 1717) (out= 767)(deflated 55%) adding: org/sbml/libsbml/SBMLReactionConverter.class(in = 2486) (out= 1012)(deflated 59%) adding: org/sbml/libsbml/SBMLReader.class(in = 1939) (out= 959)(deflated 50%) adding: org/sbml/libsbml/SBMLResolver.class(in = 3186) (out= 1232)(deflated 61%) adding: org/sbml/libsbml/SBMLResolverRegistry.class(in = 3368) (out= 1204)(deflated 64%) adding: org/sbml/libsbml/SBMLRuleConverter.class(in = 2112) (out= 941)(deflated 55%) adding: org/sbml/libsbml/SBMLStripPackageConverter.class(in = 2660) (out= 1051)(deflated 60%) adding: org/sbml/libsbml/SBMLTransforms.class(in = 3702) (out= 1250)(deflated 66%) adding: org/sbml/libsbml/SBMLUnitsConverter.class(in = 2128) (out= 942)(deflated 55%) adding: org/sbml/libsbml/SBMLUri.class(in = 1947) (out= 909)(deflated 53%) adding: org/sbml/libsbml/SBMLValidator.class(in = 4430) (out= 1640)(deflated 62%) adding: org/sbml/libsbml/SBMLWriter.class(in = 2909) (out= 1195)(deflated 58%) adding: org/sbml/libsbml/SBO.class(in = 4172) (out= 1566)(deflated 62%) adding: org/sbml/libsbml/SBase.class(in = 19210) (out= 5454)(deflated 71%) adding: org/sbml/libsbml/SBaseExtensionPoint.class(in = 2363) (out= 959)(deflated 59%) adding: org/sbml/libsbml/SBaseList.class(in = 1555) (out= 755)(deflated 51%) adding: org/sbml/libsbml/SBasePlugin.class(in = 6918) (out= 2278)(deflated 67%) adding: org/sbml/libsbml/SBaseRef.class(in = 6427) (out= 2158)(deflated 66%) adding: org/sbml/libsbml/SWIGTYPE_p_ASTFunction.class(in = 480) (out= 316)(deflated 34%) adding: org/sbml/libsbml/SWIGTYPE_p_ExpectedAttributes.class(in = 501) (out= 320)(deflated 36%) adding: org/sbml/libsbml/SWIGTYPE_p_FormulaUnitsData.class(in = 495) (out= 318)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_List.class(in = 459) (out= 309)(deflated 32%) adding: org/sbml/libsbml/SWIGTYPE_p_PrefixTransformer.class(in = 498) (out= 319)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_StringBuffer_t.class(in = 489) (out= 317)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_double.class(in = 465) (out= 309)(deflated 33%) adding: org/sbml/libsbml/SWIGTYPE_p_f_p_Model_p_SBMLErrorLog_p_void__int.class(in = 555) (out= 332)(deflated 40%) adding: org/sbml/libsbml/SWIGTYPE_p_int.class(in = 456) (out= 307)(deflated 32%) adding: org/sbml/libsbml/SWIGTYPE_p_packageErrorTableEntry.class(in = 513) (out= 319)(deflated 37%) adding: org/sbml/libsbml/SWIGTYPE_p_packageErrorTableEntryV2.class(in = 519) (out= 321)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_std__ostream.class(in = 483) (out= 315)(deflated 34%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_XMLError_p_t.class(in = 522) (out= 323)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_std__string_t.class(in = 525) (out= 321)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_void.class(in = 459) (out= 309)(deflated 32%) adding: org/sbml/libsbml/SimpleSpeciesReference.class(in = 2764) (out= 995)(deflated 64%) adding: org/sbml/libsbml/Species.class(in = 8744) (out= 2613)(deflated 70%) adding: org/sbml/libsbml/SpeciesFeature.class(in = 7339) (out= 2270)(deflated 69%) adding: org/sbml/libsbml/SpeciesFeatureType.class(in = 6593) (out= 2017)(deflated 69%) adding: org/sbml/libsbml/SpeciesFeatureValue.class(in = 3698) (out= 1355)(deflated 63%) adding: org/sbml/libsbml/SpeciesGlyph.class(in = 4333) (out= 1540)(deflated 64%) adding: org/sbml/libsbml/SpeciesReference.class(in = 5424) (out= 1750)(deflated 67%) adding: org/sbml/libsbml/SpeciesReferenceGlyph.class(in = 7030) (out= 2234)(deflated 68%) adding: org/sbml/libsbml/SpeciesType.class(in = 2911) (out= 1185)(deflated 59%) adding: org/sbml/libsbml/SpeciesTypeComponentIndex.class(in = 5261) (out= 1670)(deflated 68%) adding: org/sbml/libsbml/SpeciesTypeComponentMapInProduct.class(in = 6092) (out= 1769)(deflated 70%) adding: org/sbml/libsbml/SpeciesTypeInstance.class(in = 5049) (out= 1653)(deflated 67%) adding: org/sbml/libsbml/StoichiometryMath.class(in = 4012) (out= 1478)(deflated 63%) adding: org/sbml/libsbml/StringSet.class(in = 1985) (out= 858)(deflated 56%) adding: org/sbml/libsbml/Style.class(in = 4924) (out= 1796)(deflated 63%) adding: org/sbml/libsbml/SubListOfSpeciesFeatures.class(in = 6077) (out= 1859)(deflated 69%) adding: org/sbml/libsbml/Submodel.class(in = 9914) (out= 3063)(deflated 69%) adding: org/sbml/libsbml/SyntaxChecker.class(in = 2141) (out= 931)(deflated 56%) adding: org/sbml/libsbml/Text.class(in = 8237) (out= 2604)(deflated 68%) adding: org/sbml/libsbml/TextGlyph.class(in = 4951) (out= 1713)(deflated 65%) adding: org/sbml/libsbml/Transformation.class(in = 2720) (out= 1095)(deflated 59%) adding: org/sbml/libsbml/Transformation2D.class(in = 1821) (out= 865)(deflated 52%) adding: org/sbml/libsbml/Transition.class(in = 10816) (out= 3197)(deflated 70%) adding: org/sbml/libsbml/Trigger.class(in = 4301) (out= 1609)(deflated 62%) adding: org/sbml/libsbml/Unit.class(in = 8221) (out= 2746)(deflated 66%) adding: org/sbml/libsbml/UnitDefinition.class(in = 8489) (out= 2564)(deflated 69%) adding: org/sbml/libsbml/XMLAttributes.class(in = 6024) (out= 1773)(deflated 70%) adding: org/sbml/libsbml/XMLConstructorException.class(in = 1151) (out= 647)(deflated 43%) adding: org/sbml/libsbml/XMLError.class(in = 4410) (out= 1659)(deflated 62%) adding: org/sbml/libsbml/XMLErrorLog.class(in = 4265) (out= 1572)(deflated 63%) adding: org/sbml/libsbml/XMLInputStream.class(in = 4728) (out= 1590)(deflated 66%) adding: org/sbml/libsbml/XMLNamespaces.class(in = 4132) (out= 1457)(deflated 64%) adding: org/sbml/libsbml/XMLNode.class(in = 8021) (out= 2410)(deflated 69%) adding: org/sbml/libsbml/XMLOutputStream.class(in = 9120) (out= 2523)(deflated 72%) adding: org/sbml/libsbml/XMLOwningOutputFileStream.class(in = 1990) (out= 791)(deflated 60%) adding: org/sbml/libsbml/XMLOwningOutputStringStream.class(in = 1701) (out= 741)(deflated 56%) adding: org/sbml/libsbml/XMLToken.class(in = 12798) (out= 3356)(deflated 73%) adding: org/sbml/libsbml/XMLTriple.class(in = 2461) (out= 1085)(deflated 55%) adding: org/sbml/libsbml/double_array.class(in = 1701) (out= 846)(deflated 50%) adding: org/sbml/libsbml/int_array.class(in = 1650) (out= 837)(deflated 49%) adding: org/sbml/libsbml/libsbml.class(in = 18625) (out= 6499)(deflated 65%) adding: org/sbml/libsbml/libsbmlConstants.class(in = 65268) (out= 21285)(deflated 67%) adding: org/sbml/libsbml/libsbmlJNI.class(in = 426195) (out= 80192)(deflated 81%) [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp BUILDSTDERR: /usr/bin/javac BUILDSTDERR: -cp /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java/libsbmlj.jar:/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java BUILDSTDERR: -source;1.6;-target;1.6 BUILDSTDERR: -d /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java/test BUILDSTDERR: test/org/sbml/libsbml/test/annotation/TestCVTerms.java;test/org/sbml/libsbml/test/annotation/TestCVTerms_newSetters.java;test/org/sbml/libsbml/test/annotation/TestCopyAndClone.java;test/org/sbml/libsbml/test/annotation/TestDate_newSetters.java;test/org/sbml/libsbml/test/annotation/TestL3ModelHistory.java;test/org/sbml/libsbml/test/annotation/TestModelCreator_newSetters.java;test/org/sbml/libsbml/test/annotation/TestModelHistory.java;test/org/sbml/libsbml/test/annotation/TestModelHistory_newSetters.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotation.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotation2.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotationC.java;test/org/sbml/libsbml/test/annotation/TestValidation.java;test/org/sbml/libsbml/test/math/TestASTNode.java;test/org/sbml/libsbml/test/math/TestReadFromFile1.java;test/org/sbml/libsbml/test/math/TestReadFromFile2.java;test/org/sbml/libsbml/test/math/TestReadMathML.java;test/org/sbml/libsbml/test/math/TestValidASTNode.java;test/org/sbml/libsbml/test/math/TestWriteMathML.java;test/org/sbml/libsbml/test/sbml/TestAlgebraicRule.java;test/org/sbml/libsbml/test/sbml/TestAncestor.java;test/org/sbml/libsbml/test/sbml/TestAssignmentRule.java;test/org/sbml/libsbml/test/sbml/TestCompartment.java;test/org/sbml/libsbml/test/sbml/TestCompartmentType.java;test/org/sbml/libsbml/test/sbml/TestCompartmentType_newSetters.java;test/org/sbml/libsbml/test/sbml/TestCompartmentVolumeRule.java;test/org/sbml/libsbml/test/sbml/TestCompartment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestConsistencyChecks.java;test/org/sbml/libsbml/test/sbml/TestConstraint.java;test/org/sbml/libsbml/test/sbml/TestConstraint_newSetters.java;test/org/sbml/libsbml/test/sbml/TestCopyAndClone.java;test/org/sbml/libsbml/test/sbml/TestDelay.java;test/org/sbml/libsbml/test/sbml/TestEvent.java;test/org/sbml/libsbml/test/sbml/TestEventAssignment.java;test/org/sbml/libsbml/test/sbml/TestEventAssignment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestEvent_newSetters.java;test/org/sbml/libsbml/test/sbml/TestFunctionDefinition.java;test/org/sbml/libsbml/test/sbml/TestFunctionDefinition_newSetters.java;test/org/sbml/libsbml/test/sbml/TestGetMultipleObjects.java;test/org/sbml/libsbml/test/sbml/TestInitialAssignment.java;test/org/sbml/libsbml/test/sbml/TestInitialAssignment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestInternalConsistencyChecks.java;test/org/sbml/libsbml/test/sbml/TestKineticLaw.java;test/org/sbml/libsbml/test/sbml/TestKineticLaw_newSetters.java;test/org/sbml/libsbml/test/sbml/TestL3Compartment.java;test/org/sbml/libsbml/test/sbml/TestL3Event.java;test/org/sbml/libsbml/test/sbml/TestL3KineticLaw.java;test/org/sbml/libsbml/test/sbml/TestL3LocalParameter.java;test/org/sbml/libsbml/test/sbml/TestL3Model.java;test/org/sbml/libsbml/test/sbml/TestL3Parameter.java;test/org/sbml/libsbml/test/sbml/TestL3Reaction.java;test/org/sbml/libsbml/test/sbml/TestL3Species.java;test/org/sbml/libsbml/test/sbml/TestL3SpeciesReference.java;test/org/sbml/libsbml/test/sbml/TestL3Trigger.java;test/org/sbml/libsbml/test/sbml/TestL3Unit.java;test/org/sbml/libsbml/test/sbml/TestListOf.java;test/org/sbml/libsbml/test/sbml/TestModel.java;test/org/sbml/libsbml/test/sbml/TestModel_newSetters.java;test/org/sbml/libsbml/test/sbml/TestModifierSpeciesReference.java;test/org/sbml/libsbml/test/sbml/TestParameter.java;test/org/sbml/libsbml/test/sbml/TestParameterRule.java;test/org/sbml/libsbml/test/sbml/TestParameter_newSetters.java;test/org/sbml/libsbml/test/sbml/TestPriority.java;test/org/sbml/libsbml/test/sbml/TestRateRule.java;test/org/sbml/libsbml/test/sbml/TestReaction.java;test/org/sbml/libsbml/test/sbml/TestReaction_newSetters.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile1.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile2.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile3.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile4.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile5.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile6.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile7.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile8.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile9.java;test/org/sbml/libsbml/test/sbml/TestReadSBML.java;test/org/sbml/libsbml/test/sbml/TestRequiredAttributes.java;test/org/sbml/libsbml/test/sbml/TestRequiredElements.java;test/org/sbml/libsbml/test/sbml/TestRule.java;test/org/sbml/libsbml/test/sbml/TestRule_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSBMLConstructorException.java;test/org/sbml/libsbml/test/sbml/TestSBMLConvert.java;test/org/sbml/libsbml/test/sbml/TestSBMLConvertStrict.java;test/org/sbml/libsbml/test/sbml/TestSBMLDocument.java;test/org/sbml/libsbml/test/sbml/TestSBMLError.java;test/org/sbml/libsbml/test/sbml/TestSBMLNamespaces.java;test/org/sbml/libsbml/test/sbml/TestSBMLParentObject.java;test/org/sbml/libsbml/test/sbml/TestSBMLTransforms.java;test/org/sbml/libsbml/test/sbml/TestSBase.java;test/org/sbml/libsbml/test/sbml/TestSBase_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSpecies.java;test/org/sbml/libsbml/test/sbml/TestSpeciesConcentrationRule.java;test/org/sbml/libsbml/test/sbml/TestSpeciesReference.java;test/org/sbml/libsbml/test/sbml/TestSpeciesReference_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSpeciesType.java;test/org/sbml/libsbml/test/sbml/TestSpeciesType_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSpecies_newSetters.java;test/org/sbml/libsbml/test/sbml/TestStoichiometryMath.java;test/org/sbml/libsbml/test/sbml/TestSyntaxChecker.java;test/org/sbml/libsbml/test/sbml/TestTrigger.java;test/org/sbml/libsbml/test/sbml/TestUnit.java;test/org/sbml/libsbml/test/sbml/TestUnitDefinition.java;test/org/sbml/libsbml/test/sbml/TestUnitDefinition_newSetters.java;test/org/sbml/libsbml/test/sbml/TestUnitKind.java;test/org/sbml/libsbml/test/sbml/TestUnit_newSetters.java;test/org/sbml/libsbml/test/sbml/TestWriteL3SBML.java;test/org/sbml/libsbml/test/sbml/TestWriteSBML.java;test/org/sbml/libsbml/test/xml/TestCopyAndClone.java;test/org/sbml/libsbml/test/xml/TestXMLAttributes.java;test/org/sbml/libsbml/test/xml/TestXMLAttributesC.java;test/org/sbml/libsbml/test/xml/TestXMLError.java;test/org/sbml/libsbml/test/xml/TestXMLErrorC.java;test/org/sbml/libsbml/test/xml/TestXMLNamespaces.java;test/org/sbml/libsbml/test/xml/TestXMLNode.java;test/org/sbml/libsbml/test/xml/TestXMLNode_newSetters.java;test/org/sbml/libsbml/test/xml/TestXMLOutputStream.java;test/org/sbml/libsbml/test/xml/TestXMLToken.java;test/org/sbml/libsbml/test/xml/TestXMLToken_newSetters.java;test/org/sbml/libsbml/test/xml/TestXMLTriple.java;/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java/AutoTestRunner.java;/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java/TestPrintVersion.java BUILDSTDERR: warning: [options] bootstrap class path not set in conjunction with -source 1.6 [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:229:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.h:160, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp:447:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:243:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:303:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:96, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:343:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:454:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Member.cpp [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:479:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/BoundingBox.cpp [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:357:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:372:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:640:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-normal.i cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python" -DVERSION="5.16.0" -P /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/add_version.cmake BUILDSTDERR: Python: Add Version to generated file cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python" -P /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/patch-python.cmake -- Patching Python wrapper make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 10%] Built target binding_python_swig [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:647:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1174:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:36, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1198:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1378:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1394:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1410:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1425:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1441:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1458:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2039:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2211:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2363:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2512:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2661:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.cpp [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:494:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:966:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints 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src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp BUILDSTDERR: 1 warning make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 11%] Built target binding_java_jar [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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-o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:281:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:135:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:580:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:46, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:131:8: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:127:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:320:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:347:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:403:4: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:49, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:124:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:31: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::__cxx11::string, std::__cxx11::string)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/CompExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:320:3: note: in expansion of macro 'COMP_CREATE_NS' BUILDSTDERR: COMP_CREATE_NS(compns, m.getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:132:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:479:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:632:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:734:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:49, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:123:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:294:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:738:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:449:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:606:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:763:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:920:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1177:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1623:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:109, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:815:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:738:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:544:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:757:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1377:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1384:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:427:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:618:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:999:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:586:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:141, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:193:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:847:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1112:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1292:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1497:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:144:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:442:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:860:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Association.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:929:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:296:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:333:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:370:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:854:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:83, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:270:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:456:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:101, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:972:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1009:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1046:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1142:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1150:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1158:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1166:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp [ 15%] Building CXX object 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:308:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:345:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:382:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:121, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1252:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1166:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1262:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:346:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:695:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:85, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1172:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1268:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:92, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:208:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:223:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:238:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:986:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.h:130, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:37: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:468:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1439:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1558:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' BUILDSTDERR: FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:866:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1048:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1077:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1134:3: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.h:98, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1419:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1314:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:80, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1399:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.h:82, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:451:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:635:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:793:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1825:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:229:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.h:160, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Group.cpp:447:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:243:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:303:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/Member.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:96, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:343:5: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:66:1: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:454:3: note: in expansion of macro 'GROUPS_CREATE_NS' BUILDSTDERR: GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:425:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:684:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common 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CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.h:72, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:806:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In member function 'virtual bool ColorDefinition::hasRequiredAttributes() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1073:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mRed == this->mRed) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1074:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mGreen == this->mGreen) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1075:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mBlue == this->mBlue) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1076:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mAlpha == this->mAlpha); BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:479:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/BoundingBox.cpp [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createStyle(const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:303:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:751:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:759:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:1062:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Style.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:244:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:33: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:357:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:372:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:640:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:332:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:560:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:457:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:647:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1174:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:60, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:36, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1198:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Image.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:36: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1378:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1394:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1410:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1425:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1441:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1458:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2039:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2211:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2363:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2512:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2661:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:563:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderPoint.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:251:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.cpp [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Point.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/Curve.h:69, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:61, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:32: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:494:3: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:966:5: note: in expansion of macro 'LAYOUT_CREATE_NS' BUILDSTDERR: LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:352:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:636:8: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:645:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:967:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Style.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:337:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:117:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:340:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:374:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml 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src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/util/LayoutUtilities.cpp [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:308:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:343:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:811:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:845:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:879:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:913:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:947:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:981:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1015:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1411:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1852:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:450:9: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:675:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:713:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:940:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Style.cpp [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Text.cpp [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:63, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:135:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:580:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Transformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:46, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:131:8: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:127:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:320:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:347:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:403:4: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:49, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:124:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util/RenderUtilities.cpp [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/CVTerm.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:132:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:479:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:632:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:734:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:49, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:123:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:294:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/ModelCreator.cpp [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp: In member function 'void Date::parseDateNumbersToString()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:459:25: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u-%u-", mYear, mMonth); BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:459:25: note: directive argument in the range [10, 4294967295] BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 6 and 23 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:465:25: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%uT", mDay); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:471:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHour); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:477:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mMinute); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:483:25: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mSecond); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:502:27: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHoursOffset); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:508:27: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mMinutesOffset); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/ModelHistory.cpp [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/RDFAnnotationParser.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:738:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/common/libsbml-version.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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Building CXX object src/CMakeFiles/sbml.dir/sbml/common/operationReturnValues.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/common/operationReturnValues.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/common/operationReturnValues.cpp [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/ConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/ConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/ConversionOption.cpp [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/ConversionProperties.cpp [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:109, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:815:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:449:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:606:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:763:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:920:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1177:7: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1623:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/RegisterConverters.cpp [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLConverter.cpp [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLConverterRegistry.cpp [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:738:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLIdConverter.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:544:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:757:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1377:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1384:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:427:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:618:3: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:999:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.cpp [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.cpp [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:586:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:860:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLRateOfConverter.cpp [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLReactionConverter.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:929:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:854:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLStripPackageConverter.cpp [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:83, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:30: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:270:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:456:5: note: in expansion of macro 'MULTI_CREATE_NS' BUILDSTDERR: MULTI_CREATE_NS(multins, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLUnitsConverter.cpp [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function 'bool SBMLExtensionRegistry::setEnabled(const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:353:56: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; BUILDSTDERR: ^~~~~ [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-o CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp:401:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp:417:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp:525:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp:541:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp:2094:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp:2110:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp:876:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp:892:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp:1136:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp:1152:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp:884:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp:900:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp:2357:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp:2373:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp:1289:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp:1305:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ExpectedAttributes.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp:1361:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp:1377:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp:1271:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp:1287:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp:2047:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp:2063:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ListOf.cpp [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp:828:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp:844:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp:7333:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp:7349:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp:431:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp:447:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp:1991:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp:2007:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp:732:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp:748:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:54, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:866:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1048:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp:523:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp:539:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp:2661:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp:2677:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLConstructorException.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1908:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1924:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1940:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1956:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1972:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1988:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:68, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1077:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1134:3: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLConvert.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.h:98, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1419:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.h:89, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1314:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:80, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1399:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLError.cpp [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLErrorLog.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2301:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2317:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2333:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:58, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.h:82, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:451:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:635:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:793:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/QualExtension.h:65:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1825:5: note: in expansion of macro 'QUAL_CREATE_NS' BUILDSTDERR: QUAL_CREATE_NS(qualns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLNamespaces.cpp [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLReader.cpp [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLTransforms.cpp [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLTypeCodes.cpp [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLWriter.cpp [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBO.cpp [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBase.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:425:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:28: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:684:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SimpleSpeciesReference.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.h:72, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:806:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In member function 'virtual bool ColorDefinition::hasRequiredAttributes() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1073:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mRed == this->mRed) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1074:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mGreen == this->mGreen) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1075:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mBlue == this->mBlue) && BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1076:28: warning: self-comparison always evaluates to true [-Wtautological-compare] BUILDSTDERR: (this->mAlpha == this->mAlpha); BUILDSTDERR: ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp:2657:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp:2673:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:56, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createStyle(const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:303:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:751:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:759:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:1062:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:1969:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:1985:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:2001:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:2017:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Style.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:244:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.h:65, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:332:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:560:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp:874:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp:890:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SyntaxChecker.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.h:71, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:457:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp:638:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp:654:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp:1008:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp:1024:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Image.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp:2711:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp:2410:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp:2426:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.h:64, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:563:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 38%] Building C object src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/UnitKind.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitKind.c [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/FormulaUnitsData.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/UnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/units/UnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/UnitFormulaFormatter.cpp [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/UnitKindList.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/units/UnitKindList.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/UnitKindList.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:57, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderPoint.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:48, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:251:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/ElementFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/ElementFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/ElementFilter.cpp [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/IdFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/IdFilter.cpp [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdList.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/IdList.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/IdList.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:352:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:636:8: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:645:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:967:3: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Style.h:51, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:337:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdentifierTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/PrefixTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/PrefixTransformer.cpp [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/util.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/Stack.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/Stack.c [ 40%] Building C object src/CMakeFiles/sbml.dir/sbml/util/StringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/StringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/StringBuffer.c [ 40%] Building C object src/CMakeFiles/sbml.dir/sbml/util/memory.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/memory.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/memory.c [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/ConsistencyValidator.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:117:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:340:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:374:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/IdentifierConsistencyValidator.cpp [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L1CompatibilityValidator.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:53, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.h:55, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:308:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:343:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L2v1CompatibilityValidator.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:50, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:811:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:845:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:879:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:913:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:947:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:981:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1015:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1411:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1852:5: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:34, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:59, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:34: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:450:9: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:675:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:713:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:112:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLExtensionException e)\ BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtension.h:128:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' BUILDSTDERR: EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension/RenderExtension.h:40:3: note: in expansion of macro 'EXTENSION_CREATE_NS' BUILDSTDERR: EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:940:7: note: in expansion of macro 'RENDER_CREATE_NS' BUILDSTDERR: RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L2v2CompatibilityValidator.cpp [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L2v3CompatibilityValidator.cpp [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Style.cpp [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Text.cpp [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L3v1CompatibilityValidator.cpp [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/Transformation.cpp [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/SBMLInternalValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/SBMLInternalValidator.cpp [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/ModelCreator.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp: In member function 'void Date::parseDateNumbersToString()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:459:25: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u-%u-", mYear, mMonth); BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:459:25: note: directive argument in the range [10, 4294967295] BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 6 and 23 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:465:25: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%uT", mDay); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:471:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHour); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:477:25: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mMinute); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:483:25: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mSecond); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:502:27: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u:", mHoursOffset); BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:508:27: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] BUILDSTDERR: snprintf(cdate, 10, "%u", mMinutesOffset); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.h:234, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.h:117, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.h:151, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.h:184, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/Date.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 BUILDSTDERR: return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/ModelHistory.cpp [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/RDFAnnotationParser.cpp [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/common/operationReturnValues.cpp [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/ConversionOption.cpp [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/RegisterConverters.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLConverter.cpp [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/UnitConsistencyValidator.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.cpp [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheck.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/AssignmentRuleOrdering.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLRateOfConverter.cpp [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/SBMLStripPackageConverter.cpp [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/FunctionReferredToExists.cpp [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionException.cpp [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/IdBase.cpp [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-o CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/IdNameNewOnSBase.cpp [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawVars.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePlugin.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function 'bool SBMLExtensionRegistry::setEnabled(const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:353:56: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; BUILDSTDERR: ^~~~~ [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/LambdaMathCheck.cpp [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml 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CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/LogicalArgsMathCheck.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp:401:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AlgebraicRule.cpp:417:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/MathMLBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/ModelUnitsDangling.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp:525:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/AssignmentRule.cpp:541:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp:2094:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Compartment.cpp:2110:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/NumericArgsMathCheck.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp:876:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/CompartmentType.cpp:892:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/NumericReturnMathCheck.cpp [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/OverDeterminedCheck.cpp [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp:1136:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Constraint.cpp:1152:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/PieceBooleanMathCheck.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp:884:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Delay.cpp:900:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/PiecewiseValueMathCheck.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp:2357:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Event.cpp:2373:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp:1289:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/EventAssignment.cpp:1305:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/PowerUnitsCheck.cpp [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ExpectedAttributes.cpp [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp:1361:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/FunctionDefinition.cpp:1377:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp:1271:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/InitialAssignment.cpp:1287:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/RateOfCycles.cpp [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/ReportEmptyListOf.cpp [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ListOf.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp:2047:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/KineticLaw.cpp:2063:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdBase.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp:828:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/LocalParameter.cpp:844:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp:7333:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Model.cpp:7349:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp:431:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/ModifierSpeciesReference.cpp:447:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsInModel.cpp [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints 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Parameter_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Parameter.cpp:2007:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueVarsInRules.cpp [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp:732:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Priority.cpp:748:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UnitsBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/UnitsBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UnitsBase.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp:523:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/RateRule.cpp:539:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/ValidCnUnitsValue.cpp [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp:2661:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Reaction.cpp:2677:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTBase.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1908:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1924:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1940:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1956:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1972:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Rule.cpp:1988:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTBinaryFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTBinaryFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTBinaryFunctionNode.cpp [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCSymbol.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCSymbol.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbol.cpp [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLConstructorException.cpp [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLConvert.cpp [ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCSymbolAvogadroNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCSymbolAvogadroNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbolAvogadroNode.cpp [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCSymbolDelayNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/math/ASTCSymbolDelayNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbolDelayNode.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2301:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2317:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLDocument.cpp:2333:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCSymbolRateOfNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCSymbolRateOfNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbolRateOfNode.cpp [ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLError.cpp [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCSymbolTimeNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCSymbolTimeNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbolTimeNode.cpp [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCiFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCiFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCiFunctionNode.cpp [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCiNumberNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCiNumberNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCiNumberNode.cpp [ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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src/CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCnBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCnBase.cpp [ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SBMLReader.cpp [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCnExponentialNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCnIntegerNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCnIntegerNode.cpp [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTCnRationalNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTCnRealNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCnRealNode.cpp [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTConstantNumberNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/math/ASTConstantNumberNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTConstantNumberNode.cpp [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLWriter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTFunction.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTFunction.cpp [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTFunctionBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/math/ASTFunctionBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTFunctionBase.cpp [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SimpleSpeciesReference.cpp [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTNaryFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/math/ASTNaryFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTNaryFunctionNode.cpp [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTNumber.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTNumber.cpp [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp:2657:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Species.cpp:2673:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTPiecewiseFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTPiecewiseFunctionNode.cpp [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTQualifierNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTSemanticsNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTSemanticsNode.cpp [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTTypes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTTypes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTTypes.cpp [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTUnaryFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTUnaryFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTUnaryFunctionNode.cpp [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3Parser.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/L3Parser.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/L3Parser.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:1969:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:1985:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:2001:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesReference.cpp:2017:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp:874:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SpeciesType.cpp:890:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/L3ParserSettings.cpp [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/SyntaxChecker.cpp [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/MathML.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp:638:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/StoichiometryMath.cpp:654:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building C object src/CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/FormulaFormatter.c [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp [ 56%] Building C object src/CMakeFiles/sbml.dir/sbml/math/FormulaParser.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/math/FormulaParser.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/FormulaParser.c [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp [ 56%] Building C object src/CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/FormulaTokenizer.c BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp:1008:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Trigger.cpp:1024:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building C object src/CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/L3FormulaFormatter.c BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/Unit.cpp:2711:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/CompressCommon.cpp [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/InputDecompressor.cpp [ 56%] Building C object src/CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitKind.c [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/FormulaUnitsData.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp:2410:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/UnitDefinition.cpp:2426:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] BUILDSTDERR: catch (SBMLConstructorException) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/OutputCompressor.cpp [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/bzfstream.cpp [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/zipfstream.cpp [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLAttributes.cpp [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/memory.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/memory.c [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/L2v4CompatibilityValidator.cpp [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLInputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLInputStream.cpp [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLMemoryBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNamespaces.cpp [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/OverdeterminedValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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&& /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLNode.cpp [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/SBMLInternalValidator.cpp [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/SBMLValidator.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function 'void XMLOutputStream::writeComment(const string&, const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: warning: '%02d' directive writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-overflow=] BUILDSTDERR: sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: note: directive argument in the range [-2147483647, 2147483647] BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /usr/include/c++/8/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/8/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/8/ios:42, BUILDSTDERR: from /usr/include/c++/8/ostream:38, BUILDSTDERR: from /usr/include/c++/8/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 14 and 60 bytes into a destination of size 17 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLParser.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-o CMakeFiles/sbml.dir/sbml/xml/XMLParser.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLParser.cpp [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLTokenizer.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLTokenizer.cpp [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/KineticLawUnitsCheck.cpp [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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-c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/KineticLawVars.cpp [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp [ 64%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueIdsInModel.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueMetaId.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UniqueVarsInRules.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UnitsBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/constraints/UnitsBase.cpp [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/math/ASTBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTBinaryFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTBinaryFunctionNode.cpp [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbol.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbol.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbol.cpp [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolAvogadroNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolDelayNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolRateOfNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbolRateOfNode.cpp [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolTimeNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCSymbolTimeNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCSymbolTimeNode.cpp [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCiFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCiNumberNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCnBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCnBase.cpp [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCnExponentialNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTCnExponentialNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCnExponentialNode.cpp [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCnIntegerNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTCnIntegerNode.cpp [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCnRationalNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/ASTUnaryFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/ASTUnaryFunctionNode.cpp [ 67%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3Parser.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/FormulaTokenizer.c [ 68%] Building C object src/CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/CompressCommon.cpp [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/InputDecompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/InputDecompressor.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/InputDecompressor.cpp [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/OutputCompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/compress/zipfstream.cpp [ 69%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLToken.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLToken.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function 'void XMLOutputStream::writeComment(const string&, const string&, bool)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: warning: '%02d' directive writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-overflow=] BUILDSTDERR: sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:987:35: note: directive argument in the range [-2147483647, 2147483647] BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6361, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /usr/include/c++/8/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/8/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/8/ios:42, BUILDSTDERR: from /usr/include/c++/8/ostream:38, BUILDSTDERR: from /usr/include/c++/8/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLOutputStream.cpp:35: BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 14 and 60 bytes into a destination of size 17 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLTokenizer.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLTokenizer.cpp [ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLTriple.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLTriple.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/XMLTriple.cpp [ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/LibXMLAttributes.cpp [ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLBuffer.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLConstructorException.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLError.cpp.o /usr/bin/ar q libsbml-static.a CMakeFiles/sbml-static.dir/sbml/xml/XMLErrorLog.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLLogOverride.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLFileBuffer.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLHandler.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLInputStream.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLMemoryBuffer.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLNamespaces.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLParser.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLToken.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLTokenizer.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/XMLTriple.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLAttributes.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLHandler.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLNamespaces.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLParser.cpp.o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLTranscode.cpp.o /usr/bin/ranlib libsbml-static.a make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 70%] Built target sbml-static make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source 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'/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake --color= Scanning dependencies of target test_comp_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/test/TestCompConsistencyValidator.cpp Scanning dependencies of target test_comp_util make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build Scanning dependencies of target test_comp_extensions make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build Scanning dependencies of target test_comp_sbase make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestReadWriteSBase.cpp [ 70%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/test/TestFile.cpp [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/test/TestExtensionObjects.cpp [ 71%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/test/TestValidator.cpp [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseObjects.cpp [ 71%] Linking CXX executable test_comp_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -o test_comp_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/test/TestMultipleNamespaces.cpp [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/test/TestRunner.c [ 71%] Linking CXX executable test_comp_extensions cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_extensions.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -o test_comp_extensions ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverterStripPackage.cpp [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestPort.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestPort.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningErrorMessages.cpp [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestRunner.c [ 72%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c [ 72%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c [ 72%] Linking CXX executable test_comp_sbase cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_sbase.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestPort.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -o test_comp_sbase ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 72%] Built target test_comp_validator make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_package_fbc make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 72%] Built target test_comp_extensions [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningNewFlags.cpp [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningUnknownPackageRefs.cpp make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_fbc_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/test/TestFbcConsistencyValidator.cpp [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestCompLevelVersionConverter.cpp [ 72%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/test/TestFile.cpp [ 72%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/test/TestValidator.cpp [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestExternalModelResolving.cpp [ 72%] Linking CXX executable test_fbc_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fbc_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -o test_fbc_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestURIResolvers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 72%] Built target test_comp_sbase make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake --color= [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp Scanning dependencies of target test_extension_package_groups make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 72%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp [ 72%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test/TestGroupsModelPlugin.cpp [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test/TestRunner.c [ 72%] Linking CXX executable test_sbml_package_fbc cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_fbc.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -o test_sbml_package_fbc ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 72%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test/TestReadGroupsExtension.cpp [ 72%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp [ 72%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test/TestRunner.c [ 72%] Linking CXX executable test_extension_package_groups cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_groups.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -o test_extension_package_groups ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 72%] Built target test_fbc_validator make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake --color= [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test/TestRunner.c Scanning dependencies of target test_groups_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 72%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/test/TestFile.cpp [ 73%] Linking CXX executable test_comp_util cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_util.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o CMakeFiles/test_comp_util.dir/TestRunner.c.o -o test_comp_util ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 73%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/test/TestGroupsConsistencyValidator.cpp [ 73%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/test/TestValidator.cpp [ 74%] Linking CXX executable test_groups_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_groups_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_groups_validator.dir/TestFile.cpp.o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -o test_groups_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 74%] Built target test_sbml_package_fbc make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_package_layout make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 74%] Built target test_extension_package_groups make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_layout_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/test/TestFile.cpp [ 74%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/test/TestLayoutConsistencyValidator.cpp [ 74%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/test/TestValidator.cpp [ 74%] Linking CXX executable test_layout_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_layout_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_layout_validator.dir/TestFile.cpp.o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -o test_layout_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 74%] Built target test_groups_validator make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake --color= [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp Scanning dependencies of target test_sbml_package_multi make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 74%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test/TestCheckConsistency.cpp [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp [ 75%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test/TestMultiAST.cpp [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp [ 75%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 75%] Built target test_comp_util [ 75%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test/TestRunner.c make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_multi_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 75%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_multi_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/test/TestFile.cpp [ 75%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/test/TestMultiConsistencyValidator.cpp [ 75%] Linking CXX executable test_sbml_package_multi cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_multi.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -o test_sbml_package_multi ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp [ 75%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 75%] Built target test_layout_validator [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp [ 75%] Linking CXX executable test_multi_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_multi_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_multi_validator.dir/TestFile.cpp.o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -o test_multi_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake --color= Scanning dependencies of target test_extension_package_qual make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 75%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test/TestGetAllElements.cpp [ 76%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp [ 76%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test/TestReadQualExtension.cpp [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp [ 76%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp [ 76%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test/TestRunner.c [ 76%] Linking CXX executable test_extension_package_qual cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_qual.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -o test_extension_package_qual ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 76%] Built target test_sbml_package_multi make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_package_qual make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 76%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestCopyAndClone.cpp [ 76%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 76%] Built target test_multi_validator [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake --color= Scanning dependencies of target test_qual_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_qual_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/test/TestFile.cpp [ 77%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/test/TestQualConsistencyValidator.cpp [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp [ 77%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/test/TestValidator.cpp [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp [ 77%] Linking CXX executable test_qual_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_qual_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_qual_validator.dir/TestFile.cpp.o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -o test_qual_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 77%] Built target test_extension_package_qual [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_package_render make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 77%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test/TestRunner.c [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp [ 77%] Linking CXX executable test_sbml_package_qual cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_qual.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -o test_sbml_package_qual ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp [ 77%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp [ 77%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp [ 78%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 79%] Built target test_qual_validator [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_annotation make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestCopyAndClone.cpp [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestL3ModelHistory.cpp [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 80%] Built target test_sbml_package_qual [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_conversion make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 80%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestConversionOption.cpp [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRDFAnnotationMetaid.cpp [ 80%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestConversionProperties.cpp [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRDFAnnotationNestedCVTerms.cpp [ 80%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestInferUnitsConverter.cpp [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp [ 80%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestLevelVersionConverter.cpp [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestSyncAnnotation.cpp [ 80%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestRateOfConverter.cpp [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestValidation.cpp [ 80%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestSBMLConverterRegistry.cpp [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestCVTerms.c [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestCVTerms_newSetters.c [ 81%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestSBMLRuleConverter.cpp [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestDate_newSetters.c [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestModelCreator_newSetters.c [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestModelHistory.c [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestStripPackageConverter.cpp [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestModelHistory_newSetters.c [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestUnitsConverter.cpp [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRDFAnnotationC.c [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test/TestRunner.c [ 82%] Linking CXX executable test_sbml_annotation cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_annotation.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -o test_sbml_annotation ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestUnitsConverter2.cpp [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestUnitsConverterL2.cpp [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test/TestRunner.c [ 82%] Linking CXX executable test_sbml_conversion cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_conversion.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -o test_sbml_conversion ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 82%] Built target test_sbml_annotation [ 82%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/utility.cpp [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp [ 82%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test/TestRunner.c [ 82%] Linking CXX executable test_sbml_package_layout cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_layout.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -o test_sbml_package_layout ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_extension make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 82%] Building C object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestRunner.c [ 82%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml 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src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp [ 82%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBMLDocumentPlugin.cpp [ 82%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBMLExtension.cpp [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBMLExtensionNamespaces.cpp [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBMLExtensionRegistry.cpp [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBaseExtensionPoint.cpp [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBasePluginCreator.cpp [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestSBasePluginCreatorBase.cpp [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test/TestUnknownPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 83%] Built target test_sbml_conversion [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp [ 83%] Linking CXX executable test_sbml_extension cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_extension.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_extension.dir/TestRunner.c.o CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -o test_sbml_extension ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 84%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 84%] Built target test_sbml_package_layout [ 84%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_math make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestChildFunctions.cpp [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestGetValue.cpp make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_sbml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestL3FormulaParser.cpp make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 84%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAncestor.cpp [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestNewASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestNewASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestNewASTNode.cpp [ 84%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAttributeFunctions.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAttributeFunctions.cpp:40: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAttributeFunctions.cpp:1344:13: warning: 'void test_Attributes_Trigger_Id(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_Attributes_Trigger_Id) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestConsistencyChecks.cpp [ 84%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 84%] Built target test_sbml_extension [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestNewReadMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestNewReadMathML.cpp [ 84%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestGetMultipleObjects.cpp [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestNewWriteMathMLFromAST.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestNewWriteMathMLFromAST.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestNewWriteMathMLFromAST.cpp [ 84%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadFromFile1.cpp [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake --color= [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestInternalConsistencyChecks.cpp Scanning dependencies of target test_sbml_units make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 85%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestCalculatedUnitDefinitions.cpp [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderExtension.cpp [ 85%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestDerivedUnitDefinitions.cpp [ 86%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestFormulaUnitsData.cpp [ 86%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestLevelCompatibility.cpp [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp [ 86%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile5.cpp [ 86%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUnitFormulaFormatter.cpp [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp [ 86%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile6.cpp [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderReading.cpp [ 86%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUnitFormulaFormatter1.cpp [ 86%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile7.cpp [ 86%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUnitFormulaFormatter2.cpp [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile8.cpp [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile9.cpp [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUnitFormulaFormatter3.cpp [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUtilsUnit.cpp [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestUtilsUnitDefinition.cpp [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test/TestRunner.c [ 87%] Linking CXX executable test_sbml_units cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_units.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -o test_sbml_units ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadSBML.cpp [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRemoveFromParent.cpp [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRenameIDs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 88%] Built target test_sbml_units [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o [ 88%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadFromFile2.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRequiredAttributes.cpp [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:35: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:1529:13: warning: 'void test_element_implies(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_implies) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:1510:13: warning: 'void test_element_rem(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_rem) BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:1491:13: warning: 'void test_element_quotient(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_quotient) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:1472:13: warning: 'void test_element_min(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_min) BUILDSTDERR: ^~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestReadMathML.cpp:1453:13: warning: 'void test_element_max(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST (test_element_max) BUILDSTDERR: ^~~~~~~~~~~~~~~~ [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRequiredElements.cpp [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestValidASTNode.cpp [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints 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src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestWriteMathML.cpp [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestWriteMathMLFromAST.cpp [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestASTNode.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestASTNode.c [ 88%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o [ 88%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLConvertFromL3V2.cpp cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestFormulaFormatter.c [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLConvertStrict.cpp [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestFormulaParser.c [ 88%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestFormulaTokenizer.c [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator 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Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestL3FormulaParserC.c [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLParentObject.cpp [ 89%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test/TestRunner.c [ 90%] Linking CXX executable test_sbml_math cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_math.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o CMakeFiles/test_sbml_math.dir/TestNewASTNode.cpp.o CMakeFiles/test_sbml_math.dir/TestNewReadMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestNewWriteMathMLFromAST.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -o test_sbml_math ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_util make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 90%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestList.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestList.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestList.c [ 90%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestMemory.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestMemory.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestMemory.c [ 90%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestRunner.c [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLTransforms.cpp [ 91%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestStack.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestStack.c [ 91%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestStringBuffer.c [ 91%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestUtil.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test/TestUtil.c [ 91%] Linking CXX executable test_sbml_util cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_util.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_util.dir/TestList.c.o CMakeFiles/test_sbml_util.dir/TestMemory.c.o CMakeFiles/test_sbml_util.dir/TestRunner.c.o CMakeFiles/test_sbml_util.dir/TestStack.c.o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -o test_sbml_util ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 91%] Built target test_sbml_util [ 91%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLValidators.cpp BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLTransforms.cpp:41: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLTransforms.cpp:787:12: warning: 'void test_SBMLTransforms_replaceIAWithFD(int)' defined but not used [-Wunused-function] BUILDSTDERR: START_TEST(test_SBMLTransforms_replaceIAWithFD) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBase.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBaseIdName.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBase_newSetters.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestWriteL3V2SBML.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestWriteSBML.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAlgebraicRule.c [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestAssignmentRule.c [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestCompartment.c [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestCompartmentType.c [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestCompartmentType_newSetters.c [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestCompartmentVolumeRule.c [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestCompartment_newSetters.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestConstraint.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestConstraint_newSetters.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestDelay.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestEvent.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestEventAssignment.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestEventAssignment_newSetters.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestEvent_newSetters.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestFunctionDefinition.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestInitialAssignment.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestKineticLaw.c [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestKineticLaw_newSetters.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Compartment.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Event.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3KineticLaw.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3LocalParameter.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Model.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Parameter.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Reaction.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Species.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3SpeciesReference.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Trigger.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestL3Unit.c [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestListOf.c BUILDSTDERR: In file included from /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:76: BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp: In function 'void test_RenderWriting_write_model_1(int)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:137:13: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without BUILDSTDERR: START_TEST (test_RenderWriting_write_model_1) BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake --color= [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModel.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestModel.c Scanning dependencies of target test_sbml_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 95%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test/TestConsistencyValidator.cpp [ 95%] Linking CXX executable test_sbml_package_render cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_render.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -o test_sbml_package_render ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 95%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test/TestFile.cpp [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestModel_newSetters.c [ 95%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 95%] Built target test_sbml_math make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_xml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestCopyAndClone.cpp [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestModifierSpeciesReference.c [ 95%] Linking CXX executable test_sbml_validator cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -o test_sbml_validator ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLAttributes.cpp [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestParameter.c [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints 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CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestParameterRule.c [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints 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/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLError.cpp [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLExceptions.cpp [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestPriority.c [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLNode.cpp [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRateRule.c [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestRunner.c [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLAttributesC.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReaction.c [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLErrorC.c [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLErrorLog.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReaction_newSetters.c [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLInputStream.c [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLNamespaces.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLNode_newSetters.c [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile2.c [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLOutputStream.c [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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-fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLToken.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestReadFromFile3.c [ 97%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLToken_newSetters.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test/TestXMLTriple.c [ 98%] Linking CXX executable test_sbml_xml cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_xml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -o test_sbml_xml ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src 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CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRule.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRule_newSetters.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 98%] Built target test_sbml_validator [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLConvert.c make -f src/bindings/java/CMakeFiles/binding_java_lib.dir/build.make src/bindings/java/CMakeFiles/binding_java_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java/CMakeFiles/binding_java_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_java_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/java/CMakeFiles/binding_java_lib.dir/build.make src/bindings/java/CMakeFiles/binding_java_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 98%] Building CXX object src/bindings/java/CMakeFiles/binding_java_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_java_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java/../swig -I/builddir/build/BUILD/libSBML-5.16.0-Source/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_java_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java/libsbml_wrap.cpp [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSBMLDocument.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpecies.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpeciesReference.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpeciesType.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpeciesType_newSetters.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSpecies_newSetters.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestStoichiometryMath.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 99%] Built target test_sbml_xml [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestSyntaxChecker.c make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_perl_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestTrigger.c make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 99%] Building CXX object src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_perl_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/usr/lib64/perl5/CORE -I/builddir/build/BUILD/libSBML-5.16.0-Source/include -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/perl/../swig -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl/LibSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 99%] Built target test_sbml_package_render make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestUnit.c Scanning dependencies of target binding_python_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 99%] Building CXX object src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_python_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python/../swig -I/builddir/build/BUILD/libSBML-5.16.0-Source/include -I/usr/include/python3.6m -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/libsbml_wrap.cpp [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension 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CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestUnitDefinition.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestUnitKind.c [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test/TestUnit_newSetters.c [ 99%] Linking CXX executable test_sbml_sbml cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_sbml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o 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-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__slice(std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type, std::__cxx11::basic_string::difference_type)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4993:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] BUILDSTDERR: catch( std::out_of_range ) { BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__delete_at(std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5039:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] BUILDSTDERR: catch (std::out_of_range) BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__at(const std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5049:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] BUILDSTDERR: catch( std::out_of_range ) { BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg____getitem____SWIG_0(const std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type, std::__cxx11::basic_string::difference_type)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5071:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] BUILDSTDERR: catch( std::out_of_range ) { BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg____getitem____SWIG_1(const std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5080:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] BUILDSTDERR: catch( std::out_of_range ) { BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLConverter* SwigDirector_SBMLConverter::clone() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5648:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("clone"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLDocument* SwigDirector_SBMLConverter::getDocument()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5666:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getDocument"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual const SBMLDocument* SwigDirector_SBMLConverter::getDocument() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5684:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getDocument"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual ConversionProperties SwigDirector_SBMLConverter::getDefaultProperties() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5701:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getDefaultProperties"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLNamespaces* SwigDirector_SBMLConverter::getTargetNamespaces()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5718:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getTargetNamespaces"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual ConversionProperties* SwigDirector_SBMLConverter::getProperties() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5792:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getProperties"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual int SwigDirector_SBMLConverter::convert()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5807:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("convert"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLValidator* SwigDirector_SBMLValidator::clone() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5840:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("clone"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLDocument* SwigDirector_SBMLValidator::getDocument()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5858:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getDocument"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual const SBMLDocument* SwigDirector_SBMLValidator::getDocument() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5876:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("getDocument"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual unsigned int SwigDirector_SBMLValidator::validate()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5908:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("validate"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual void SwigDirector_SBMLValidator::clearFailures()': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5922:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("clearFailures"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function 'virtual SBMLResolver* SwigDirector_SBMLResolver::clone() const': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5948:12: warning: converting to non-pointer type 'VALUE' {aka 'long unsigned int'} from NULL [-Wconversion-null] BUILDSTDERR: result = rb_funcall(swig_get_self(), rb_intern("clone"), 0, NULL); BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = long int]': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4991:127: required from here BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4011:69: warning: comparison of integer expressions of different signedness: 'long int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); BUILDSTDERR: ~~^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4011:82: warning: comparison of integer expressions of different signedness: 'long int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); BUILDSTDERR: ~~^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = int]': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5114:131: required from here BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4011:69: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); BUILDSTDERR: ~~^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4011:82: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); BUILDSTDERR: ~~^~~~~~~ [ 99%] Linking CXX shared library libsbmlj.so cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_java_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libsbmlj.so -o libsbmlj.so CMakeFiles/binding_java_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lbz2 -lz -lminizip -lxml2 BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLErrorLog_add(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:1374:83: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define SWIG_ConvertPtr(obj, pptr, type, flags) SWIG_Ruby_ConvertPtrAndOwn(obj, pptr, type, flags, 0) BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:102117:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_matchesRequiredSBMLNamespacesForAddition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:1374:83: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define SWIG_ConvertPtr(obj, pptr, type, flags) SWIG_Ruby_ConvertPtrAndOwn(obj, pptr, type, flags, 0) BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:21801:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_matchesSBMLNamespaces(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:1374:83: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define SWIG_ConvertPtr(obj, pptr, type, flags) SWIG_Ruby_ConvertPtrAndOwn(obj, pptr, type, flags, 0) BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:21688:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ASTBase_setType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5211:29: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:116278:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Iterator___sub__(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:3407:27: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: res = SWIG_AsVal_long (obj, val ? &v : 0); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:8302:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ConstIterator___sub__(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:3407:27: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: res = SWIG_AsVal_long (obj, val ? &v : 0); BUILDSTDERR: ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:7719:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGradientStops_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:276725:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GradientBase_getGradientStop(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:263289:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ReactionGlyph_getSpeciesReferenceGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:197168:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GeneralGlyph_getReferenceGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:194568:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReplacedElements_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:140232:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBasePlugin_getReplacedElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:127715:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CVTerm_getNestedCVTerm(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:107533:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBMLErrorLog_getNumFailsWithSeverity(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:102767:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfConstraints_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:59197:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_UnitDefinition_getUnit(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:43113:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfUnits_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:41494:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getConstraint(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29877:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Compartment_setSpatialDimensions(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:47381:36: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_double(argv[1], NULL); BUILDSTDERR: ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Unit_setExponent(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:40670:36: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_double(argv[1], NULL); BUILDSTDERR: ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_getDisabledPlugin(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:20824:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GeneralGlyph_getSubGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:194687:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Curve_getCurveSegment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:189740:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLineSegments_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:189039:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOf_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:22782:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CVTerm_getResourceURI(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:106917:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setVTextAnchor(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:304981:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setTextAnchor(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:304861:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setFontStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:304741:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setFontWeight(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:304621:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setFillRule(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:304313:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_DefaultValues_setSpreadMethod(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:303647:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalStyles_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:299823:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalStyles_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:299643:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalRenderInformation_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:297837:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalRenderInformation_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:297657:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_LocalRenderInformation_getStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:296505:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLineEndings_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:295001:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLineEndings_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:294821:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderGroup_getElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:290682:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfDrawables_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:289324:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfDrawables_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:289144:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGlobalStyles_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:275192:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGlobalStyles_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:275012:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGlobalRenderInformation_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:273540:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGlobalRenderInformation_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:273360:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GlobalRenderInformation_getStyle(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:272087:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfColorDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:268499:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfColorDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:268319:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderInformationBase_getLineEnding(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:262475:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderInformationBase_getColorDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:261601:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderLayoutPlugin_removeLocalRenderInformation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:259364:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderLayoutPlugin_getRenderInformation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:259131:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderListOfLayoutsPlugin_removeGlobalRenderInformation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:258564:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderListOfLayoutsPlugin_getRenderInformation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:258331:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfTransitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:256628:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfTransitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:256448:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_removeFunctionTerm(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:255490:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_getFunctionTerm(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:255230:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_removeOutput(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:254982:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_getOutputBySpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:254782:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_getOutput(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:254597:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_removeInput(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:254349:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_getInputBySpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:254149:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Transition_getInput(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:253964:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfQualitativeSpecies_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:252966:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfQualitativeSpecies_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:252786:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfOutputs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:251018:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfOutputs_getBySpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:250898:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfOutputs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:250713:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInputs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:249049:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInputs_getBySpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:248929:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInputs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:248744:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFunctionTerms_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:246190:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFunctionTerms_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:246010:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_QualModelPlugin_removeTransition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:244438:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_QualModelPlugin_getTransition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:244202:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_QualModelPlugin_removeQualitativeSpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:243930:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_QualModelPlugin_getQualitativeSpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:243694:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_removeInSpeciesTypeBond(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:239233:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_getInSpeciesTypeBond(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:238973:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_removeSpeciesTypeComponentIndex(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:238725:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_getSpeciesTypeComponentIndex(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:238465:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_removeSpeciesTypeInstance(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:238217:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_getSpeciesTypeInstance(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:237957:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_removeSpeciesFeatureType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:237709:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesType_getSpeciesFeatureType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:237449:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SubListOfSpeciesFeatures_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:236152:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SubListOfSpeciesFeatures_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:235972:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeComponentMapInProducts_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:235056:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeComponentMapInProducts_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:234876:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatures_removeSubListOfSpeciesFeatures(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:233104:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatures_getSubListOfSpeciesFeatures(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:232924:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatures_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:232706:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatures_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:232526:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesFeature_removeSpeciesFeatureValue(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:231747:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesFeature_getSpeciesFeatureValue(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:231487:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeComponentIndexes_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:230221:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeComponentIndexes_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:230041:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatureTypes_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:228450:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatureTypes_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:228270:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesFeatureType_removePossibleSpeciesFeatureValue(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:227599:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesFeatureType_getPossibleSpeciesFeatureValue(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:227339:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfOutwardBindingSites_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:226244:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfOutwardBindingSites_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:226064:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInSpeciesTypeBonds_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:224480:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInSpeciesTypeBonds_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:224300:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeInstances_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:222709:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypeInstances_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:222529:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentReferences_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:220938:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentReferences_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:220758:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatureValues_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:219278:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesFeatureValues_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:219098:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfPossibleSpeciesFeatureValues_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:217840:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfPossibleSpeciesFeatureValues_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:217660:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesReferencePlugin_removeSpeciesTypeComponentMapInProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:215892:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesReferencePlugin_getSpeciesTypeComponentMapInProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:215656:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesPlugin_removeSpeciesFeature(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:214558:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesPlugin_getSubListOfSpeciesFeatures(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:214322:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesPlugin_getSpeciesFeature(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:214045:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesPlugin_removeOutwardBindingSite(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:213773:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiSpeciesPlugin_getOutwardBindingSite(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:213537:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiCompartmentPlugin_removeCompartmentReference(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:212819:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiCompartmentPlugin_getCompartmentReference(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:212583:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_LayoutModelPlugin_getLayout(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:208498:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLayouts_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:207270:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLayouts_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:207090:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_removeAdditionalGraphicalObject(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:206362:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_removeTextGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:206277:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_removeReactionGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:206160:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_removeSpeciesGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:206077:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_removeCompartmentGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:205994:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getGeneralGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:205133:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getAdditionalGraphicalObject(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:205015:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getTextGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:204895:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getReactionGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:204777:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getSpeciesGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:204659:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Layout_getCompartmentGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:204541:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfTextGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:202837:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfTextGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:202657:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReactionGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:202083:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReactionGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:201903:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:201329:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:201149:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:200599:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:200419:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ReactionGlyph_removeSpeciesReferenceGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:197686:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesReferenceGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:196320:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesReferenceGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:196140:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GeneralGlyph_removeSubGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:195334:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GeneralGlyph_removeReferenceGlyph(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:195244:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReferenceGlyphs_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:193519:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReferenceGlyphs_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:193339:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesReferenceGlyph_setRole(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:190935:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGraphicalObjects_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:184484:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGraphicalObjects_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:184300:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfMembers_getByIdRef(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:177711:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfMembers_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:177506:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfMembers_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:177326:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGroups_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:176400:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGroups_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:176220:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Group_removeMember(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:174391:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Group_getMemberByIdRef(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:174191:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Group_getMember(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:174006:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Group_setKind(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:173686:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GroupsModelPlugin_removeGroup(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:172685:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_GroupsModelPlugin_getGroup(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:172425:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGeneProducts_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:167244:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGeneProducts_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:166984:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfObjectives_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:161234:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfObjectives_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:160974:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Objective_removeFluxObjective(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:160229:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Objective_getFluxObjective(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:159969:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Objective_setType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:159649:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGeneAssociations_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:158837:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGeneAssociations_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:158657:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFluxObjectives_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:157144:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFluxObjectives_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:156884:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFluxBounds_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:155324:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFluxBounds_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:155144:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FluxBound_setOperation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:154330:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_removeGeneAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:150384:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_getGeneAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:150148:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_removeGeneProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:149900:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_getGeneProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:149640:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_removeObjective(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:149179:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_getObjective(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:148919:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_removeFluxBound(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:148647:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcModelPlugin_getFluxBound(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:148372:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Submodel_removeDeletion(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:145355:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Submodel_getDeletion(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:145095:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSubmodels_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:141026:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSubmodels_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:140846:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfPorts_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:139719:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfPorts_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:139539:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfModelDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:138989:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfModelDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:138809:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfExternalModelDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:138259:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfExternalModelDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:138079:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfDeletions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:137529:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfDeletions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:137349:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBMLDocumentPlugin_removeExternalModelDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:131020:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBMLDocumentPlugin_getModel(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:130793:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBMLDocumentPlugin_getExternalModelDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:130604:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ [100%] Linking CXX shared library _libsbml.so cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,_libsbml.so -o _libsbml.so CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lpython3.6m -lbz2 -lz -lminizip -lxml2 BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBMLDocumentPlugin_removeModelDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:130419:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompSBMLDocumentPlugin_getModelDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:130164:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompModelPlugin_getPort(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:129184:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CompModelPlugin_getSubmodel(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:128774:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ASTNode_getPlugin(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:122860:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ASTBase_getPlugin(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:118316:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ASTBase_addPlugin(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:118147:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CVTerm_setBiologicalQualifierType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:107221:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_CVTerm_setModelQualifierType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:107133:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLNode_getChild(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:94974:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLToken_getNamespacePrefix(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:92746:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLToken_removeNamespace(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:92500:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLNamespaces_getPrefix(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:89334:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_XMLNamespaces_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:89031:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ConversionProperties_getOption(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:80393:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfEventAssignments_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:72160:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfEventAssignments_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:71980:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfEvents_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:70634:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfEvents_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:70454:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Event_removeEventAssignment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:69892:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Event_getEventAssignment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:69688:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesReferences_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:67750:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesReferences_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:67566:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesReference_appendAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:67100:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SpeciesReference_setAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:66981:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_KineticLaw_removeLocalParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:65301:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_KineticLaw_removeParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:65213:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_KineticLaw_getLocalParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:64779:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_KineticLaw_getParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:64622:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReactions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:63399:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfReactions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:63215:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_removeModifier(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:62669:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_removeProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:62549:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_removeReactant(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:62429:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_getModifier(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:62177:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_getProduct(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:61956:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Reaction_getReactant(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:61735:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfRules_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:57342:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfRules_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:57117:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInitialAssignments_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:55423:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfInitialAssignments_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:55243:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalParameters_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:53897:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfLocalParameters_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:53676:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfParameters_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:52736:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfParameters_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:52556:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpecies_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:51152:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpecies_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:50972:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartments_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:48575:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartments_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:48395:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypes_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:46432:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfSpeciesTypes_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:46252:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentTypes_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:45355:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCompartmentTypes_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:45175:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfUnitDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:44278:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfUnitDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:44057:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFunctionDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:39056:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFunctionDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:38876:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FunctionDefinition_getArgument(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:38208:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeEvent(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:34165:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeReaction(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:34045:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeRule(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33848:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeInitialAssignment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33724:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33604:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeSpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33484:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeCompartment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33364:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeSpeciesType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33244:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeCompartmentType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33124:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeUnitDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:33004:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_removeFunctionDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:32884:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getEvent(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:30549:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getModifierSpeciesReference(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:30388:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getSpeciesReference(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:30263:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getReaction(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:30078:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getRateRuleByVariable(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29794:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getAssignmentRuleByVariable(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29669:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getRateRule(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29544:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getAssignmentRule(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29419:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getRuleByVariable(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29294:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getRule(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:29105:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getInitialAssignmentBySymbol(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:28936:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getInitialAssignment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:28790:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getParameter(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:28530:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getSpecies(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:28309:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getCompartment(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:28088:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getSpeciesType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:27867:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getCompartmentType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:27646:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getUnitDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:27425:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_getFunctionDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:27204:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_appendAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:25999:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Model_setAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:25880:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_getPlugin(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:20677:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_setSBOTerm(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:19639:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_appendNotes(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:19437:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_replaceTopLevelAnnotationElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:19132:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_appendAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:18808:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_setAnnotation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:18689:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_getElementByMetaId(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:16655:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_SBase_getElementBySId(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:16526:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_Polygon_getElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:288350:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderCurve_getElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:287145:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderCurve_getCurveElement(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:287060:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfCurveElements_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:295617:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiModelPlugin_removeMultiSpeciesType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:211737:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcAnd_removeAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:169390:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcOr_removeAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:170626:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFbcAssociations_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:164126:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfMultiSpeciesTypes_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:240147:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGradientDefinitions_remove(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:264765:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcOr_getAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:170213:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_RenderInformationBase_getGradientDefinition(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:262029:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_FbcAnd_getAssociation(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:168977:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_MultiModelPlugin_getMultiSpeciesType(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:211471:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfGradientDefinitions_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:264581:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfMultiSpeciesTypes_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:239963:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ListOfFbcAssociations_get(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2695:41: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsVal_unsigned_SS_long (obj, &v); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:163814:9: note: 'argv[1]' was declared here BUILDSTDERR: VALUE argv[3]; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE _wrap_ASTNode_setDefinitionURL(int, VALUE*, VALUE)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:121939:56: warning: 'argv[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: int res = SWIG_AsPtr_std_basic_string_Sl_char_Sg_(argv[1], (std::basic_string**)(0)); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_ruby_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lruby -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_java_lib make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_r_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Building CXX object src/bindings/r/CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_r_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/util -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r -I/builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r/../swig -I/builddir/build/BUILD/libSBML-5.16.0-Source/include -I/usr/include/R -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libsbml_wrap.cpp BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function 'int _p_f_p_q_const__ASTNode__int(const ASTNode_t*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libsbml_wrap.cpp:89858:14: warning: unused variable 'arg1' [-Wunused-variable] BUILDSTDERR: ASTNode_t *arg1 = (ASTNode_t *) 0 ; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libsbml_wrap.cpp:89864:7: warning: unused variable 'ecode' [-Wunused-variable] BUILDSTDERR: int ecode = 0; BUILDSTDERR: ^~~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function 'int _p_f_p_Model_p_SBMLErrorLog_p_void__int(Model*, SBMLErrorLog*, void*)': BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libsbml_wrap.cpp:111189:10: warning: unused variable 'arg1' [-Wunused-variable] BUILDSTDERR: Model *arg1 = (Model *) 0 ; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libsbml_wrap.cpp:111190:17: warning: unused variable 'arg2' [-Wunused-variable] BUILDSTDERR: SBMLErrorLog *arg2 = (SBMLErrorLog *) 0 ; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libsbml_wrap.cpp:111191:9: warning: unused variable 'arg3' [-Wunused-variable] BUILDSTDERR: void *arg3 = (void *) 0 ; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libsbml_wrap.cpp:111197:7: warning: unused variable 'ecode' [-Wunused-variable] BUILDSTDERR: int ecode = 0; BUILDSTDERR: ^~~~~ [100%] Linking CXX shared module LibSBML.so cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_perl_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -shared -o LibSBML.so CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o ../../libsbml-static.a -lperl -lbz2 -lz -lminizip -lxml2 [100%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_r_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -L/usr/lib64/R/lib ../../libsbml-static.a -lR -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_ruby_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_python_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_r_lib make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake --color= Scanning dependencies of target binding_r_package make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Create R Package (64bit) cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML_5.16.0_R_riscv64-koji-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_r_package make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_perl_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.16.0-Source/build/CMakeFiles 0 ~/build/BUILD/libSBML-5.16.0-Source/build-docs ~/build/BUILD/libSBML-5.16.0-Source/build ~/build/BUILD/libSBML-5.16.0-Source/build2 ~/build/BUILD/libSBML-5.16.0-Source + pushd ../build-docs + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config/config.sub BUILDSTDERR: ++ basename ./config/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config/config.sub '/usr/lib/rpm/redhat/config.sub' -> './config/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config/config.guess BUILDSTDERR: ++ basename ./config/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config/config.guess '/usr/lib/rpm/redhat/config.guess' -> './config/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./config/ltmain.sh + ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static --with-expat=no --with-libxml=yes --enable-layout --enable-comp --enable-fbc --enable-qual BUILDSTDERR: configure: WARNING: unrecognized options: --disable-dependency-tracking checking build system type... riscv64-koji-linux-gnu checking host system type... riscv64-koji-linux-gnu checking for riscv64-koji-linux-gnu-g++... no checking for riscv64-koji-linux-gnu-c++... no checking for riscv64-koji-linux-gnu-gpp... no checking for riscv64-koji-linux-gnu-aCC... no checking for riscv64-koji-linux-gnu-CC... no checking for riscv64-koji-linux-gnu-cxx... no checking for riscv64-koji-linux-gnu-cc++... no checking for riscv64-koji-linux-gnu-cl.exe... no checking for riscv64-koji-linux-gnu-FCC... no checking for riscv64-koji-linux-gnu-KCC... no checking for riscv64-koji-linux-gnu-RCC... no checking for riscv64-koji-linux-gnu-xlC_r... no checking for riscv64-koji-linux-gnu-xlC... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for riscv64-koji-linux-gnu-gcc... no checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether make sets $(MAKE)... yes checking for autoconf... autoconf checking for aclocal... aclocal checking whether -Wno-long-double is supported... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking for riscv64-koji-linux-gnu-g77... no checking for riscv64-koji-linux-gnu-xlf... no checking for riscv64-koji-linux-gnu-f77... no checking for riscv64-koji-linux-gnu-frt... no checking for riscv64-koji-linux-gnu-pgf77... no checking for riscv64-koji-linux-gnu-cf77... no checking for riscv64-koji-linux-gnu-fort77... no checking for riscv64-koji-linux-gnu-fl32... no checking for riscv64-koji-linux-gnu-af77... no checking for riscv64-koji-linux-gnu-xlf90... no checking for riscv64-koji-linux-gnu-f90... no checking for riscv64-koji-linux-gnu-pgf90... no checking for riscv64-koji-linux-gnu-pghpf... no checking for riscv64-koji-linux-gnu-epcf90... no checking for riscv64-koji-linux-gnu-gfortran... no checking for riscv64-koji-linux-gnu-g95... no checking for riscv64-koji-linux-gnu-xlf95... no checking for riscv64-koji-linux-gnu-f95... no checking for riscv64-koji-linux-gnu-fort... no checking for riscv64-koji-linux-gnu-ifort... no checking for riscv64-koji-linux-gnu-ifc... no checking for riscv64-koji-linux-gnu-efc... no checking for riscv64-koji-linux-gnu-pgfortran... no checking for riscv64-koji-linux-gnu-pgf95... no checking for riscv64-koji-linux-gnu-lf95... no checking for riscv64-koji-linux-gnu-ftn... no checking for riscv64-koji-linux-gnu-nagfor... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking the maximum length of command line arguments... 1572864 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for riscv64-koji-linux-gnu-ar... no checking for ar... ar checking for riscv64-koji-linux-gnu-ranlib... no checking for ranlib... ranlib checking for riscv64-koji-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate checking for bash... /usr/bin/bash checking if dolt supports this host... no, falling back to libtool checking for isnan in -lm... yes checking for xml2-config... /usr/bin/xml2-config checking for libxml2 - version >= 2.6.16... yes (version 2.9.8) checking for zlib library... yes checking for deflate in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for possibly buggy zlib... no checking for bzip2 library... yes checking for BZ2_bzopen in -lbz2... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for ANSI C header files... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for size_t... yes configure: creating ./config.status config.status: creating config/makefile-common-vars.mk config.status: creating config/lt_link_helper.sh config.status: creating config/mkoctfile_wrapper.sh config.status: creating config/chk_swig_version.sh config.status: creating ./Makefile config.status: creating libsbml.spec config.status: creating src/Makefile config.status: creating src/sbml/common/Makefile config.status: creating src/sbml/common/libsbml-version.h config.status: creating src/bindings/Makefile config.status: creating src/bindings/python/Makefile config.status: creating src/bindings/python/setup.py config.status: creating src/bindings/perl/Makefile config.status: creating src/bindings/perl/Makefile.PL config.status: creating src/bindings/matlab/Makefile config.status: creating src/bindings/matlab/test/Makefile config.status: creating src/bindings/octave/Makefile config.status: creating src/bindings/octave/test/Makefile config.status: creating src/bindings/java/Makefile config.status: creating src/bindings/java/Manifest.txt config.status: creating src/bindings/ruby/Makefile config.status: creating src/bindings/csharp/Makefile config.status: creating src/sbml/annotation/Makefile config.status: creating src/sbml/annotation/test/Makefile config.status: creating src/sbml/math/Makefile config.status: creating src/sbml/math/test/Makefile config.status: creating src/sbml/math-legacy/Makefile config.status: creating src/sbml/math-legacy/test/Makefile config.status: creating src/sbml/units/Makefile config.status: creating src/sbml/units/test/Makefile config.status: creating src/sbml/Makefile config.status: creating src/sbml/test/Makefile config.status: creating src/sbml/util/Makefile config.status: creating src/sbml/util/test/Makefile config.status: creating src/sbml/validator/Makefile config.status: creating src/sbml/validator/constraints/Makefile config.status: creating src/sbml/validator/test/Makefile config.status: creating src/sbml/validator/test/test-data/Makefile config.status: creating src/sbml/validator/test/test-data/sbml-general-consistency-constraints/Makefile config.status: creating src/sbml/xml/Makefile config.status: creating src/sbml/xml/test/Makefile config.status: creating src/sbml/compress/Makefile config.status: creating src/sbml/extension/Makefile config.status: creating src/sbml/extension/test/Makefile config.status: creating src/sbml/extension/RegisterExtensions.h config.status: creating src/sbml/extension/RegisterExtensions.cxx config.status: creating src/sbml/conversion/Makefile config.status: creating src/sbml/conversion/test/Makefile config.status: creating src/sbml/packages/Makefile config.status: creating src/sbml/packages/comp/Makefile config.status: creating src/sbml/packages/comp/common/Makefile config.status: creating src/sbml/packages/comp/extension/Makefile config.status: creating src/sbml/packages/comp/extension/test/Makefile config.status: creating src/sbml/packages/comp/sbml/Makefile config.status: creating src/sbml/packages/comp/sbml/test/Makefile config.status: creating src/sbml/packages/comp/util/Makefile config.status: creating src/sbml/packages/comp/util/test/Makefile config.status: creating src/sbml/packages/comp/validator/Makefile config.status: creating src/sbml/packages/comp/validator/constraints/Makefile config.status: creating src/sbml/packages/comp/validator/test/Makefile config.status: creating src/sbml/packages/comp/validator/test/test-data/Makefile config.status: creating examples/c++/comp/Makefile config.status: creating examples/c/comp/Makefile config.status: creating src/sbml/packages/fbc/common/Makefile config.status: creating src/sbml/packages/fbc/extension/Makefile config.status: creating src/sbml/packages/fbc/extension/test/Makefile config.status: creating src/sbml/packages/fbc/Makefile config.status: creating src/sbml/packages/fbc/sbml/Makefile config.status: creating src/sbml/packages/fbc/util/Makefile config.status: creating src/sbml/packages/fbc/validator/constraints/Makefile config.status: creating src/sbml/packages/fbc/validator/Makefile config.status: creating src/sbml/packages/fbc/validator/test/Makefile config.status: creating src/sbml/packages/fbc/validator/test/test-data/Makefile config.status: creating examples/c++/fbc/Makefile config.status: creating src/sbml/packages/layout/Makefile config.status: creating src/sbml/packages/layout/common/Makefile config.status: creating src/sbml/packages/layout/extension/Makefile config.status: creating src/sbml/packages/layout/sbml/Makefile config.status: creating src/sbml/packages/layout/sbml/test/Makefile config.status: creating src/sbml/packages/layout/util/Makefile config.status: creating src/sbml/packages/layout/validator/Makefile config.status: creating src/sbml/packages/layout/validator/constraints/Makefile config.status: creating src/sbml/packages/layout/validator/test/Makefile config.status: creating src/sbml/packages/layout/validator/test/test-data/Makefile config.status: creating src/sbml/packages/qual/Makefile config.status: creating src/sbml/packages/qual/common/Makefile config.status: creating src/sbml/packages/qual/extension/Makefile config.status: creating src/sbml/packages/qual/sbml/Makefile config.status: creating src/sbml/packages/qual/sbml/test/Makefile config.status: creating src/sbml/packages/qual/validator/Makefile config.status: creating src/sbml/packages/qual/validator/constraints/Makefile config.status: creating src/sbml/packages/qual/validator/test/Makefile config.status: creating src/sbml/packages/qual/validator/test/test-data/Makefile config.status: creating examples/c++/qual/Makefile config.status: creating docs/Makefile config.status: creating docs/index.html config.status: creating docs/src/Makefile config.status: creating docs/src/doxygen-config-c.txt config.status: creating docs/src/doxygen-config-cpp.txt config.status: creating docs/src/doxygen-config-csharp.txt config.status: creating docs/src/doxygen-config-octave.txt config.status: creating docs/src/doxygen-config-python.txt config.status: creating docs/src/doxygen-config-perl.txt config.status: creating docs/src/doxygen-config-matlab.txt config.status: creating docs/src/common-text/libsbml-downloading.html config.status: creating docs/src/common-text/libsbml-group-comp-intro.html config.status: creating docs/src/common-text/libsbml-group-fbc-intro.html config.status: creating docs/src/common-text/libsbml-group-groups-intro.html config.status: creating docs/src/common-text/libsbml-group-layout-intro.html config.status: creating docs/src/common-text/libsbml-group-multi-intro.html config.status: creating docs/src/common-text/libsbml-group-qual-intro.html config.status: creating docs/src/common-text/libsbml-installation.html config.status: creating docs/src/common-text/libsbml-version.html config.status: creating docs/src/common-text/sbml-specifications-table.html config.status: creating docs/src/java-substitutions/libsbmlConstants.java config.status: creating examples/c/Makefile config.status: creating examples/c++/Makefile config.status: creating examples/java/Makefile config.status: creating examples/csharp/Makefile config.status: creating examples/c++/layout/Makefile config.status: creating src/bindings/csharp/local-downcast-astplugins.i config.status: creating src/bindings/csharp/local-downcast-extension.i config.status: creating src/bindings/csharp/local-downcast-namespaces.i config.status: creating src/bindings/csharp/local-downcast-converters.i config.status: creating src/bindings/csharp/local-packages.i config.status: creating src/bindings/java/local-downcast-astplugins.i config.status: creating src/bindings/java/local-downcast-extension.i config.status: creating src/bindings/java/local-downcast-namespaces.i config.status: creating src/bindings/java/local-downcast-converters.i config.status: creating src/bindings/java/local-packages.i config.status: creating src/bindings/perl/local-downcast.cpp config.status: creating src/bindings/perl/local-downcast-astplugins.cpp config.status: creating src/bindings/perl/local-downcast-extension.cpp config.status: creating src/bindings/perl/local-downcast-namespaces.cpp config.status: creating src/bindings/perl/local-downcast-converters.cpp config.status: creating src/bindings/perl/local-downcast-plugins.cpp config.status: creating src/bindings/perl/local-packages.i config.status: creating src/bindings/python/local-downcast.cpp config.status: creating src/bindings/python/local-downcast-astplugins.cpp config.status: creating src/bindings/python/local-downcast-extension.cpp config.status: creating src/bindings/python/local-downcast-namespaces.cpp config.status: creating src/bindings/python/local-downcast-converters.cpp config.status: creating src/bindings/python/local-downcast-plugins.cpp config.status: creating src/bindings/python/local-packages.i config.status: creating src/bindings/ruby/local-downcast.cpp config.status: creating src/bindings/ruby/local-downcast-astplugins.cpp config.status: creating src/bindings/ruby/local-downcast-extension.cpp config.status: creating src/bindings/ruby/local-downcast-namespaces.cpp config.status: creating src/bindings/ruby/local-downcast-converters.cpp config.status: creating src/bindings/ruby/local-downcast-plugins.cpp config.status: creating src/bindings/ruby/local-packages.i config.status: creating src/bindings/swig/libsbml-packages.h config.status: creating src/bindings/swig/libsbml-packages.i config.status: creating macosx/Makefile config.status: creating macosx/build.sh config.status: creating macosx/resources/package-intro.txt config.status: creating macosx/resources/package-readme.txt config.status: creating macosx/libsbml-package.pmdoc/01local-contents.xml config.status: creating macosx/libsbml-package.pmdoc/01local.xml config.status: creating macosx/libsbml-package.pmdoc/index.xml config.status: creating src/sbml/common/libsbml-config-common.h config.status: creating src/sbml/common/libsbml-package.h config.status: src/sbml/common/libsbml-package.h is unchanged config.status: creating src/sbml/common/libsbml-namespace.h config.status: src/sbml/common/libsbml-namespace.h is unchanged BUILDSTDERR: configure: WARNING: unrecognized options: --disable-dependency-tracking ---------------------------------------------------------------------- libSBML version 5.16.0 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/software/libsbml/issue-tracker To contact the developers directly, email libsbml-team@googlegroups.com Configured on host "five.home.annexia.org" host type = linux host vendor = koji host operating system = linux-gnu host CPU architecture = riscv64 General build flags: CC = gcc CXX = g++ CPPFLAGS = -DLINUX CFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now CFLAGS_ARCH = CXXFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now CXXFLAGS_ARCH = LDFLAGS = -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed LDFLAGS_ARCH = LIBS = -lm -lz -lbz2 XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LDFLAGS for XML = LIBS for XML = -lxml2 -lz -llzma -lm -ldl XML2_CONFIG = /usr/bin/xml2-config Other libSBML configuration settings: Installation $prefix = /usr Using zlib with path = autodetect Using bzip2 with path = autodetect Support for SBML packages: SBML 'comp' = yes SBML 'fbc' = yes SBML 'layout' = yes SBML 'qual' = yes Other potentially important settings: Compression support is enabled for .zip, .gz and .bz2 files Value of $LD_LIBRARY_PATH = ---------------------------------------------------------------------- + make -j4 libsbml.pc make: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build-docs' make: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build-docs' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.JmZ59l + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64 + cd libSBML-5.16.0-Source + make -C build2 install DESTDIR=/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64 make: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' /usr/bin/cmake -H/builddir/build/BUILD/libSBML-5.16.0-Source -B/builddir/build/BUILD/libSBML-5.16.0-Source/build2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.16.0-Source/build2/CMakeFiles /builddir/build/BUILD/libSBML-5.16.0-Source/build2/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/CMakeFiles/sbml-static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/CMakeFiles/sbml-static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 36%] Built target sbml-static make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/CMakeFiles/sbml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/CMakeFiles/sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 71%] Built target sbml make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 71%] Built target test_comp_extensions make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 72%] Built target test_comp_sbase make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 73%] Built target test_comp_util make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 73%] Built target test_comp_validator make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 74%] Built target test_sbml_package_fbc make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 75%] Built target test_fbc_validator make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 76%] Built target test_extension_package_groups make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 76%] Built target test_groups_validator make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 78%] Built target test_sbml_package_layout make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 78%] Built target test_layout_validator make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 78%] Built target test_sbml_package_multi make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 79%] Built target test_multi_validator make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 79%] Built target test_extension_package_qual make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 80%] Built target test_sbml_package_qual make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 80%] Built target test_qual_validator make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 82%] Built target test_sbml_package_render make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 84%] Built target test_sbml_annotation make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 85%] Built target test_sbml_conversion make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 86%] Built target test_sbml_extension make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 87%] Built target test_sbml_math make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 96%] Built target test_sbml_sbml make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 97%] Built target test_sbml_units make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 98%] Built target test_sbml_util make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [ 98%] Built target test_sbml_validator make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [100%] Built target test_sbml_xml make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [100%] Built target binding_python_swig make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build2 /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build2/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' [100%] Built target binding_python_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.16.0-Source/build2/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./COPYING.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./FUNDING.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./LICENSE.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./NEWS.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./OLD_NEWS.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./README.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./VERSION.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/pkgconfig/libsbml.pc -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/common/CompExtensionTypes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/common/compfwd.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/extension/CompExtension.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/extension/CompModelPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/extension/CompSBasePlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/CompBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/Deletion.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ExternalModelDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfDeletions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfModelDefinitions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfPorts.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfReplacedElements.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfSubmodels.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ModelDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/Port.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ReplacedBy.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ReplacedElement.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/Replacing.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/SBaseRef.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/Submodel.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/util/CompFlatteningConverter.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/util/SBMLFileResolver.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/util/SBMLResolver.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/util/SBMLResolverRegistry.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/util/SBMLUri.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompSBMLError.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompSBMLErrorTable.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompUnitConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/constraints/ClassReplacements.h -- Installing: 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/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/cmake/sbml-static-config.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/cmake/sbml-static-config-release.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/cmake/sbml-static-config-version.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/python2.7/site-packages/libsbml/_libsbml.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/python2.7/site-packages/libsbml.pth -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/python2.7/site-packages/libsbml/libsbml.py make: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build2' + make -C build install DESTDIR=/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64 make: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' /usr/bin/cmake -H/builddir/build/BUILD/libSBML-5.16.0-Source -B/builddir/build/BUILD/libSBML-5.16.0-Source/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.16.0-Source/build/CMakeFiles /builddir/build/BUILD/libSBML-5.16.0-Source/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/CMakeFiles/sbml-static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml-static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 35%] Built target sbml-static make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/CMakeFiles/sbml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 70%] Built target sbml make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 71%] Built target test_comp_extensions make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 72%] Built target test_comp_sbase make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 73%] Built target test_comp_util make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 73%] Built target test_comp_validator make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 73%] Built target test_sbml_package_fbc make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 73%] Built target test_fbc_validator make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 73%] Built target test_extension_package_groups make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 74%] Built target test_groups_validator make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 76%] Built target test_sbml_package_layout make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 76%] Built target test_layout_validator make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 76%] Built target test_sbml_package_multi make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 76%] Built target test_multi_validator make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 77%] Built target test_extension_package_qual make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 78%] Built target test_sbml_package_qual make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 78%] Built target test_qual_validator make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 81%] Built target test_sbml_package_render make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 83%] Built target test_sbml_annotation make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 84%] Built target test_sbml_conversion make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 85%] Built target test_sbml_extension make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/math/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 87%] Built target test_sbml_math make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 95%] Built target test_sbml_sbml make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/units/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 96%] Built target test_sbml_units make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/util/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 97%] Built target test_sbml_util make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 97%] Built target test_sbml_validator make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 99%] Built target test_sbml_xml make -f src/bindings/java/CMakeFiles/binding_java_swig.dir/build.make src/bindings/java/CMakeFiles/binding_java_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java/CMakeFiles/binding_java_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/java/CMakeFiles/binding_java_swig.dir/build.make src/bindings/java/CMakeFiles/binding_java_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/bindings/java/CMakeFiles/binding_java_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 99%] Built target binding_java_swig make -f src/bindings/java/CMakeFiles/binding_java_lib.dir/build.make src/bindings/java/CMakeFiles/binding_java_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java/CMakeFiles/binding_java_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/java/CMakeFiles/binding_java_lib.dir/build.make src/bindings/java/CMakeFiles/binding_java_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/bindings/java/CMakeFiles/binding_java_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 99%] Built target binding_java_lib make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/bindings/java/CMakeFiles/binding_java_jar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 99%] Built target binding_java_jar make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 99%] Built target binding_perl_swig make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 99%] Built target binding_perl_lib make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [ 99%] Built target binding_python_swig make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_python_lib make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_ruby_swig make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_ruby_lib make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_r_swig make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_r_lib make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' cd /builddir/build/BUILD/libSBML-5.16.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.16.0-Source /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Create R Package (64bit) cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libSBML-5.16.0-Source/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML_5.16.0_R_riscv64-koji-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' [100%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.16.0-Source/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./COPYING.txt -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./FUNDING.txt -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./LICENSE.txt -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./NEWS.txt -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./OLD_NEWS.txt -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./README.txt -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/./VERSION.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/pkgconfig/libsbml.pc -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/common/CompExtensionTypes.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/common/compfwd.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/extension/CompExtension.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/extension/CompModelPlugin.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/extension/CompSBasePlugin.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/CompBase.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/Deletion.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ExternalModelDefinition.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfDeletions.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfModelDefinitions.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfPorts.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfReplacedElements.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ListOfSubmodels.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ModelDefinition.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/Port.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ReplacedBy.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/ReplacedElement.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/Replacing.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/SBaseRef.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/sbml/Submodel.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/util/CompFlatteningConverter.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/util/SBMLFileResolver.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/util/SBMLResolver.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/util/SBMLResolverRegistry.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/util/SBMLUri.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompConsistencyValidator.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompSBMLError.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompSBMLErrorTable.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompUnitConsistencyValidator.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/CompValidator.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/constraints/ClassReplacements.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/constraints/CompIdBase.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.h -- Up-to-date: 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Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTConstantNumberNode.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTFunction.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTFunctionBase.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTLambdaFunctionNode.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTNaryFunctionNode.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTNode.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTNumber.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTPiecewiseFunctionNode.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTQualifierNode.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTSemanticsNode.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTTypes.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/ASTUnaryFunctionNode.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/FormulaFormatter.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/FormulaParser.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/FormulaTokenizer.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/L3FormulaFormatter.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/L3Parser.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/L3ParserSettings.h -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/include/sbml/math/MathML.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/libsbml.so.5.16.0 -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/libsbml.so.5 -- Up-to-date: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/libsbml.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/cmake/sbml-config.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/cmake/sbml-config-release.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/cmake/sbml-config-version.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/libsbml-static.a -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/cmake/sbml-static-config.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/cmake/sbml-static-config-release.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/cmake/sbml-static-config-version.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/libsbmlj.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/java/libsbmlj.jar -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/perl5/vendor_perl/LibSBML.pod -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/perl5/vendor_perl/LibSBML.pm -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/perl5/vendor_perl/auto/libSBML/LibSBML.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/python3.6/site-packages/libsbml/_libsbml.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/python3.6/site-packages/libsbml.pth -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/python3.6/site-packages/libsbml/libsbml.py -- Installing: /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/ruby/vendor_ruby/libSBML.so BUILDSTDERR: Notice: the libSBML R interface must be installed separately. BUILDSTDERR: To install it, please execute the following shell command: BUILDSTDERR: R CMD INSTALL /builddir/build/BUILD/libSBML-5.16.0-Source/build/src/bindings/r/libSBML_5.16.0_R_riscv64-koji-linux-gnu.tar.gz make: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build' + rm -f /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/FUNDING.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/NEWS.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/OLD_NEWS.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/README.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/libsbml/VERSION.txt + mkdir -p /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/libsbml /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib/java + mv /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/java/libsbmlj.jar /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib/java/ + mv /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/libsbmlj.so /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/libsbml/ + mkdir -p /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/R/library build/src/bindings/r/libSBML_5.16.0_R_riscv64-koji-linux-gnu.tar.gz BUILDSTDERR: * installing *binary* package 'libSBML' ... BUILDSTDERR: * DONE (libSBML) + rm -rf /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/R/library/libSBML/R.css + make -C build-docs install-pc DESTDIR=/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64 make: Entering directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build-docs' /builddir/build/BUILD/libSBML-5.16.0-Source/build-docs/config/install-sh -c libsbml.pc -m 0644 "/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/pkgconfig/libsbml.pc" make: Leaving directory '/builddir/build/BUILD/libSBML-5.16.0-Source/build-docs' + install -Dm0644 src/bindings/ruby/README.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/doc/libsbml/README-ruby.txt + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/python3.6 using /usr/bin/python3.6 Bytecompiling .py files below /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/lib64/python2.7 using /usr/bin/python2.7 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.U3M8dT Processing files: libsbml-5.16.0-7.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.DgKw4X + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.16.0-Source + DOCDIR=/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/doc/libsbml + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/doc/libsbml + cp -pr AUTHORS.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/doc/libsbml + cp -pr README-extension.txt README.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/doc/libsbml + cp -pr NEWS.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/doc/libsbml + cp -pr OLD_NEWS.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/doc/libsbml + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.GJuu33 + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.16.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + exit 0 Provides: libsbml = 5.16.0-7.fc29 libsbml(riscv-64) = 5.16.0-7.fc29 libsbml.so.5()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libminizip.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Obsoletes: octave-SBML <= 0:5.14.0 Processing files: libsbml-devel-5.16.0-7.fc29.riscv64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.98PHwN + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.16.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + exit 0 Provides: libsbml-devel = 5.16.0-7.fc29 libsbml-devel(riscv-64) = 5.16.0-7.fc29 libsbml-static = 5.16.0-7.fc29 pkgconfig(libsbml) = 5.16.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libsbml.so.5()(64bit) pkgconfig(libxml-2.0) >= 2.6.22 Processing files: python2-libsbml-5.16.0-7.fc29.riscv64 Provides: python-libsbml = 5.16.0-7.fc29 python-libsbml(riscv-64) = 5.16.0-7.fc29 python2-libsbml = 5.16.0-7.fc29 python2-libsbml(riscv-64) = 5.16.0-7.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libminizip.so.1()(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) python(abi) = 2.7 rtld(GNU_HASH) Obsoletes: python-libsbml < 5.16.0-7.fc29 Processing files: python3-libsbml-5.16.0-7.fc29.riscv64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.KcQbLC + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.16.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + exit 0 Provides: python3-libsbml = 5.16.0-7.fc29 python3-libsbml(riscv-64) = 5.16.0-7.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libminizip.so.1()(64bit) libpython3.6m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) python(abi) = 3.6 rtld(GNU_HASH) Processing files: perl-LibSBML-5.16.0-7.fc29.riscv64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.8J2z5F + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.16.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + exit 0 Provides: perl(LibSBML) perl(LibSBML::ASTBase) perl(LibSBML::ASTBasePlugin) perl(LibSBML::ASTNode) perl(LibSBML::ASTNodeList) perl(LibSBML::AlgebraicRule) perl(LibSBML::AssignmentRule) perl(LibSBML::Association) perl(LibSBML::BindingSiteSpeciesType) perl(LibSBML::BoundingBox) perl(LibSBML::CVTerm) perl(LibSBML::CVTermList) perl(LibSBML::CobraToFbcConverter) perl(LibSBML::ColorDefinition) perl(LibSBML::CompBase) perl(LibSBML::CompExtension) perl(LibSBML::CompFlatteningConverter) perl(LibSBML::CompModelPlugin) perl(LibSBML::CompPkgNamespaces) perl(LibSBML::CompSBMLDocumentPlugin) perl(LibSBML::CompSBasePlugin) perl(LibSBML::Compartment) perl(LibSBML::CompartmentGlyph) perl(LibSBML::CompartmentReference) perl(LibSBML::CompartmentType) perl(LibSBML::Constraint) perl(LibSBML::ConversionOption) perl(LibSBML::ConversionProperties) perl(LibSBML::CubicBezier) perl(LibSBML::Curve) perl(LibSBML::Date) perl(LibSBML::DateList) perl(LibSBML::DefaultTerm) perl(LibSBML::DefaultValues) perl(LibSBML::Delay) perl(LibSBML::Deletion) perl(LibSBML::Dimensions) perl(LibSBML::ElementFilter) perl(LibSBML::Ellipse) perl(LibSBML::Event) perl(LibSBML::EventAssignment) perl(LibSBML::ExternalModelDefinition) perl(LibSBML::FbcAnd) perl(LibSBML::FbcAssociation) perl(LibSBML::FbcExtension) perl(LibSBML::FbcModelPlugin) perl(LibSBML::FbcOr) perl(LibSBML::FbcPkgNamespaces) perl(LibSBML::FbcReactionPlugin) perl(LibSBML::FbcSBMLDocumentPlugin) perl(LibSBML::FbcSpeciesPlugin) perl(LibSBML::FbcToCobraConverter) perl(LibSBML::FbcV1ToV2Converter) perl(LibSBML::FbcV2ToV1Converter) perl(LibSBML::FluxBound) perl(LibSBML::FluxObjective) perl(LibSBML::FunctionDefinition) perl(LibSBML::FunctionTerm) perl(LibSBML::GeneAssociation) perl(LibSBML::GeneProduct) perl(LibSBML::GeneProductAssociation) perl(LibSBML::GeneProductRef) perl(LibSBML::GeneralGlyph) perl(LibSBML::GlobalRenderInformation) perl(LibSBML::GlobalStyle) perl(LibSBML::GradientBase) perl(LibSBML::GradientStop) perl(LibSBML::GraphicalObject) perl(LibSBML::GraphicalPrimitive1D) perl(LibSBML::GraphicalPrimitive2D) perl(LibSBML::Group) perl(LibSBML::GroupsExtension) perl(LibSBML::GroupsModelPlugin) perl(LibSBML::GroupsPkgNamespaces) perl(LibSBML::ISBMLExtensionNamespaces) perl(LibSBML::IdList) perl(LibSBML::IdentifierTransformer) perl(LibSBML::Image) perl(LibSBML::InSpeciesTypeBond) perl(LibSBML::InitialAssignment) perl(LibSBML::Input) perl(LibSBML::IntraSpeciesReaction) perl(LibSBML::KineticLaw) perl(LibSBML::L3ParserSettings) perl(LibSBML::Layout) perl(LibSBML::LayoutExtension) perl(LibSBML::LayoutModelPlugin) perl(LibSBML::LayoutPkgNamespaces) perl(LibSBML::LayoutSpeciesReferencePlugin) perl(LibSBML::LineEnding) perl(LibSBML::LineSegment) perl(LibSBML::LinearGradient) perl(LibSBML::ListOf) perl(LibSBML::ListOfColorDefinitions) perl(LibSBML::ListOfCompartmentGlyphs) perl(LibSBML::ListOfCompartmentReferences) perl(LibSBML::ListOfCompartmentTypes) perl(LibSBML::ListOfCompartments) perl(LibSBML::ListOfConstraints) perl(LibSBML::ListOfCurveElements) perl(LibSBML::ListOfDeletions) perl(LibSBML::ListOfDrawables) perl(LibSBML::ListOfEventAssignments) perl(LibSBML::ListOfEvents) perl(LibSBML::ListOfExternalModelDefinitions) perl(LibSBML::ListOfFbcAssociations) perl(LibSBML::ListOfFluxBounds) perl(LibSBML::ListOfFluxObjectives) perl(LibSBML::ListOfFunctionDefinitions) perl(LibSBML::ListOfFunctionTerms) perl(LibSBML::ListOfGeneAssociations) perl(LibSBML::ListOfGeneProducts) perl(LibSBML::ListOfGlobalRenderInformation) perl(LibSBML::ListOfGlobalStyles) perl(LibSBML::ListOfGradientDefinitions) perl(LibSBML::ListOfGradientStops) perl(LibSBML::ListOfGraphicalObjects) perl(LibSBML::ListOfGroups) perl(LibSBML::ListOfInSpeciesTypeBonds) perl(LibSBML::ListOfInitialAssignments) perl(LibSBML::ListOfInputs) perl(LibSBML::ListOfLayouts) perl(LibSBML::ListOfLineEndings) perl(LibSBML::ListOfLineSegments) perl(LibSBML::ListOfLocalParameters) perl(LibSBML::ListOfLocalRenderInformation) perl(LibSBML::ListOfLocalStyles) perl(LibSBML::ListOfMembers) perl(LibSBML::ListOfModelDefinitions) perl(LibSBML::ListOfMultiSpeciesTypes) perl(LibSBML::ListOfObjectives) perl(LibSBML::ListOfOutputs) perl(LibSBML::ListOfOutwardBindingSites) perl(LibSBML::ListOfParameters) perl(LibSBML::ListOfPorts) perl(LibSBML::ListOfPossibleSpeciesFeatureValues) perl(LibSBML::ListOfQualitativeSpecies) perl(LibSBML::ListOfReactionGlyphs) perl(LibSBML::ListOfReactions) perl(LibSBML::ListOfReferenceGlyphs) perl(LibSBML::ListOfReplacedElements) perl(LibSBML::ListOfRules) perl(LibSBML::ListOfSpecies) perl(LibSBML::ListOfSpeciesFeatureTypes) perl(LibSBML::ListOfSpeciesFeatureValues) perl(LibSBML::ListOfSpeciesFeatures) perl(LibSBML::ListOfSpeciesGlyphs) perl(LibSBML::ListOfSpeciesReferenceGlyphs) perl(LibSBML::ListOfSpeciesReferences) perl(LibSBML::ListOfSpeciesTypeComponentIndexes) perl(LibSBML::ListOfSpeciesTypeComponentMapInProducts) perl(LibSBML::ListOfSpeciesTypeInstances) perl(LibSBML::ListOfSpeciesTypes) perl(LibSBML::ListOfSubmodels) perl(LibSBML::ListOfTextGlyphs) perl(LibSBML::ListOfTransitions) perl(LibSBML::ListOfUnitDefinitions) perl(LibSBML::ListOfUnits) perl(LibSBML::LocalParameter) perl(LibSBML::LocalRenderInformation) perl(LibSBML::LocalStyle) perl(LibSBML::MathFilter) perl(LibSBML::MathML) perl(LibSBML::Member) perl(LibSBML::Model) perl(LibSBML::ModelCreator) perl(LibSBML::ModelCreatorList) perl(LibSBML::ModelDefinition) perl(LibSBML::ModelHistory) perl(LibSBML::ModifierSpeciesReference) perl(LibSBML::MultiASTPlugin) perl(LibSBML::MultiCompartmentPlugin) perl(LibSBML::MultiExtension) perl(LibSBML::MultiListOfReactionsPlugin) perl(LibSBML::MultiModelPlugin) perl(LibSBML::MultiPkgNamespaces) perl(LibSBML::MultiSBMLDocumentPlugin) perl(LibSBML::MultiSimpleSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesPlugin) perl(LibSBML::MultiSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesType) perl(LibSBML::OFStream) perl(LibSBML::OStream) perl(LibSBML::OStringStream) perl(LibSBML::Objective) perl(LibSBML::Output) perl(LibSBML::OutwardBindingSite) perl(LibSBML::Parameter) perl(LibSBML::Point) perl(LibSBML::Polygon) perl(LibSBML::Port) perl(LibSBML::PossibleSpeciesFeatureValue) perl(LibSBML::Priority) perl(LibSBML::QualExtension) perl(LibSBML::QualModelPlugin) perl(LibSBML::QualPkgNamespaces) perl(LibSBML::QualitativeSpecies) perl(LibSBML::RDFAnnotationParser) perl(LibSBML::RadialGradient) perl(LibSBML::RateRule) perl(LibSBML::Reaction) perl(LibSBML::ReactionGlyph) perl(LibSBML::Rectangle) perl(LibSBML::ReferenceGlyph) perl(LibSBML::RelAbsVector) perl(LibSBML::RenderCubicBezier) perl(LibSBML::RenderCurve) perl(LibSBML::RenderExtension) perl(LibSBML::RenderGraphicalObjectPlugin) perl(LibSBML::RenderGroup) perl(LibSBML::RenderInformationBase) perl(LibSBML::RenderLayoutPlugin) perl(LibSBML::RenderListOfLayoutsPlugin) perl(LibSBML::RenderPkgNamespaces) perl(LibSBML::RenderPoint) perl(LibSBML::ReplacedBy) perl(LibSBML::ReplacedElement) perl(LibSBML::Replacing) perl(LibSBML::Rule) perl(LibSBML::SBMLConstructorException) perl(LibSBML::SBMLConverter) perl(LibSBML::SBMLConverterRegistry) perl(LibSBML::SBMLDocument) perl(LibSBML::SBMLDocumentPlugin) perl(LibSBML::SBMLError) perl(LibSBML::SBMLErrorLog) perl(LibSBML::SBMLExtension) perl(LibSBML::SBMLExtensionException) perl(LibSBML::SBMLExtensionRegistry) perl(LibSBML::SBMLExternalValidator) perl(LibSBML::SBMLFileResolver) perl(LibSBML::SBMLFunctionDefinitionConverter) perl(LibSBML::SBMLIdConverter) perl(LibSBML::SBMLInferUnitsConverter) perl(LibSBML::SBMLInitialAssignmentConverter) perl(LibSBML::SBMLLevel1Version1Converter) perl(LibSBML::SBMLLevelVersionConverter) perl(LibSBML::SBMLLocalParameterConverter) perl(LibSBML::SBMLNamespaces) perl(LibSBML::SBMLNamespacesList) perl(LibSBML::SBMLReactionConverter) perl(LibSBML::SBMLReader) perl(LibSBML::SBMLResolver) perl(LibSBML::SBMLResolverRegistry) perl(LibSBML::SBMLRuleConverter) perl(LibSBML::SBMLStripPackageConverter) perl(LibSBML::SBMLTransforms) perl(LibSBML::SBMLUnitsConverter) perl(LibSBML::SBMLUri) perl(LibSBML::SBMLValidator) perl(LibSBML::SBMLWriter) perl(LibSBML::SBO) perl(LibSBML::SBase) perl(LibSBML::SBaseExtensionPoint) perl(LibSBML::SBaseList) perl(LibSBML::SBasePlugin) perl(LibSBML::SBaseRef) perl(LibSBML::SimpleSpeciesReference) perl(LibSBML::Species) perl(LibSBML::SpeciesFeature) perl(LibSBML::SpeciesFeatureType) perl(LibSBML::SpeciesFeatureValue) perl(LibSBML::SpeciesGlyph) perl(LibSBML::SpeciesReference) perl(LibSBML::SpeciesReferenceGlyph) perl(LibSBML::SpeciesType) perl(LibSBML::SpeciesTypeComponentIndex) perl(LibSBML::SpeciesTypeComponentMapInProduct) perl(LibSBML::SpeciesTypeInstance) perl(LibSBML::StoichiometryMath) perl(LibSBML::StringSet) perl(LibSBML::Style) perl(LibSBML::SubListOfSpeciesFeatures) perl(LibSBML::Submodel) perl(LibSBML::SyntaxChecker) perl(LibSBML::Text) perl(LibSBML::TextGlyph) perl(LibSBML::Transformation) perl(LibSBML::Transformation2D) perl(LibSBML::Transition) perl(LibSBML::Trigger) perl(LibSBML::Unit) perl(LibSBML::UnitDefinition) perl(LibSBML::XMLAttributes) perl(LibSBML::XMLConstructorException) perl(LibSBML::XMLError) perl(LibSBML::XMLErrorLog) perl(LibSBML::XMLInputStream) perl(LibSBML::XMLNamespaces) perl(LibSBML::XMLNode) perl(LibSBML::XMLOutputStream) perl(LibSBML::XMLOwningOutputFileStream) perl(LibSBML::XMLOwningOutputStringStream) perl(LibSBML::XMLToken) perl(LibSBML::XMLTriple) perl(LibSBML::double_array) perl(LibSBML::int_array) perl(LibSBMLc) perl-LibSBML = 5.16.0-7.fc29 perl-LibSBML(riscv-64) = 5.16.0-7.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libminizip.so.1()(64bit) libperl.so.5.26()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) perl(DynaLoader) perl(Exporter) perl(base) perl(overload) perl(vars) rtld(GNU_HASH) Processing files: ruby-SBML-5.16.0-7.fc29.riscv64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.La5CZK + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.16.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + exit 0 Provides: libSBML.so()(64bit) ruby(SBML) = 5.16.0 ruby-SBML = 5.16.0-7.fc29 ruby-SBML(riscv-64) = 5.16.0-7.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libminizip.so.1()(64bit) libruby.so.2.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: java-libsbml-5.16.0-7.fc29.riscv64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.zq8ydt + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.16.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + exit 0 Provides: java-libsbml = 5.16.0-7.fc29 java-libsbml(riscv-64) = 5.16.0-7.fc29 libsbmlj.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libminizip.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: R-libSBML-5.16.0-7.fc29.riscv64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.lEyVIA + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.16.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64/usr/share/licenses/libsbml + exit 0 Provides: R-libSBML = 5.16.0-7.fc29 R-libSBML(riscv-64) = 5.16.0-7.fc29 libSBML.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libminizip.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64 Wrote: /builddir/build/RPMS/libsbml-5.16.0-7.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/libsbml-devel-5.16.0-7.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/python2-libsbml-5.16.0-7.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/python3-libsbml-5.16.0-7.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/perl-LibSBML-5.16.0-7.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/ruby-SBML-5.16.0-7.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/java-libsbml-5.16.0-7.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-libSBML-5.16.0-7.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.zjtIGP + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.16.0-Source + /usr/bin/rm -rf /builddir/build/BUILDROOT/libsbml-5.16.0-7.fc29.riscv64 + exit 0 Child return code was: 0