Package org.jmol.util
Class MeshSurface
- java.lang.Object
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- org.jmol.util.MeshSurface
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Field Summary
Fields Modifier and Type Field Description javajs.util.T3[]
altVertices
javajs.util.BS
bsDisplay
javajs.util.BS
bsPolygons
javajs.util.BS
bsSlabDisplay
javajs.util.BS
bsSlabGhost
short
colix
short
colixBack
boolean
colorsExplicit
boolean
dataOnly
boolean
haveQuads
protected int
iA
protected int
iB
protected int
iC
boolean
isColorSolid
boolean
isDrawPolygon
boolean
isMerged
private short
lastColix
private int
lastColor
javajs.util.M4
mat4
int
mergePolygonCount0
int
mergeVertexCount0
String
meshType
int
normalCount
javajs.util.T3[]
normals
javajs.util.V3[]
normalsTemp
int
normixCount
int
nSets
javajs.util.V3[]
oabc
javajs.util.P3
offset
static int
P_CHECK
static int
P_CONTOUR
static int
P_EXPLICIT_COLOR
int
pc
polygon countshort[]
pcs
polygon color index "colix" arrayint[][]
pis
polygon indexesint
polygonCount0
protected static int
SEED_COUNT
short
slabColix
int
slabMeshType
javajs.util.SB
slabOptions
private MeshSlicer
slicer
javajs.util.BS
surfaceAtoms
javajs.util.BS[]
surfaceSet
int
vc
vertex countshort[]
vcs
vertex color index "colix" arrayint
vertexCount0
int[]
vertexSets
int[]
vertexSource
javajs.util.T3[]
vs
verticesfloat[]
vvs
vertex valuesViewer
vwr
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Constructor Summary
Constructors Constructor Description MeshSurface()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description int
addPolygon(int[] polygon, javajs.util.BS bs)
protected int
addPolygonC(int[] polygon, int color, javajs.util.BS bs, boolean isExplicit)
(package private) int
addPolygonV3(int vertexA, int vertexB, int vertexC, int check, int iContour, int color, javajs.util.BS bs)
void
addQuad(int vertexA, int vertexB, int vertexC, int vertexD)
void
addTriangle(int vertexA, int vertexB, int vertexC)
int
addTriangleCheck(int vertexA, int vertexB, int vertexC, int check, int iContour, int color)
int
addV(javajs.util.T3 vertex, boolean asCopy)
int
addVCVal(javajs.util.T3 vertex, float value, boolean asCopy)
int[][]
getFaces()
MeshSlicer
getMeshSlicer()
float
getResolution()
String
getSlabColor()
String
getSlabType()
static MeshSurface
getSphereData(int lvl)
Calculates the data (faces, vertices, normals) for a sphere.static float
getSphericalInterpolationFraction(double r, double valueA, double valueB, double d)
javajs.util.T3[]
getVertices()
void
invalidatePolygons()
static MeshSurface
newMesh(boolean isAlt, javajs.util.T3[] vertices, int vertexCount, int[][] polygonIndexes, javajs.util.T3[] normals, int nNormals)
void
resetSlab()
protected int[]
setABC(int i)
void
setBoundingBox(javajs.util.P3[] boundBoxPoints)
void
setBox(javajs.util.P3 xyzMin, javajs.util.P3 xyzMax)
void
setColix(short colix)
void
setColixBack(short colix)
void
setPolygonCount(int polygonCount)
void
setTranslucentVertices(javajs.util.BS bsVertices)
Must create bsTransPolygons, polygonTranslucencies, and new triangle set for partially translucent polygonsprotected void
slabBrillouin(javajs.util.P3[] unitCellVectors)
void
slabPolygonsList(javajs.util.Lst<Object[]> slabInfo, boolean allowCap)
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Field Detail
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SEED_COUNT
protected static final int SEED_COUNT
- See Also:
- Constant Field Values
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P_CHECK
public static final int P_CHECK
- See Also:
- Constant Field Values
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P_CONTOUR
public static final int P_CONTOUR
- See Also:
- Constant Field Values
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P_EXPLICIT_COLOR
public static final int P_EXPLICIT_COLOR
- See Also:
- Constant Field Values
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vwr
public Viewer vwr
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slicer
private MeshSlicer slicer
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oabc
public javajs.util.V3[] oabc
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meshType
public String meshType
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vc
public int vc
vertex count
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vs
public javajs.util.T3[] vs
vertices
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vvs
public float[] vvs
vertex values
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vertexSource
public int[] vertexSource
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surfaceAtoms
public javajs.util.BS surfaceAtoms
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pc
public int pc
polygon count
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pis
public int[][] pis
polygon indexes
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colorsExplicit
public boolean colorsExplicit
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isDrawPolygon
public boolean isDrawPolygon
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haveQuads
public boolean haveQuads
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colix
public short colix
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colixBack
public short colixBack
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isColorSolid
public boolean isColorSolid
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offset
public javajs.util.P3 offset
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altVertices
public javajs.util.T3[] altVertices
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pcs
public short[] pcs
polygon color index "colix" array
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vcs
public short[] vcs
vertex color index "colix" array
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normals
public javajs.util.T3[] normals
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normalsTemp
public javajs.util.V3[] normalsTemp
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normalCount
public int normalCount
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normixCount
public int normixCount
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bsPolygons
public javajs.util.BS bsPolygons
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mat4
public javajs.util.M4 mat4
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surfaceSet
public javajs.util.BS[] surfaceSet
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vertexSets
public int[] vertexSets
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nSets
public int nSets
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dataOnly
public boolean dataOnly
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lastColor
private int lastColor
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lastColix
private short lastColix
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iA
protected int iA
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iB
protected int iB
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iC
protected int iC
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polygonCount0
public int polygonCount0
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vertexCount0
public int vertexCount0
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bsSlabDisplay
public javajs.util.BS bsSlabDisplay
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bsSlabGhost
public javajs.util.BS bsSlabGhost
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slabMeshType
public int slabMeshType
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slabColix
public short slabColix
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bsDisplay
public javajs.util.BS bsDisplay
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slabOptions
public javajs.util.SB slabOptions
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mergeVertexCount0
public int mergeVertexCount0
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mergePolygonCount0
public int mergePolygonCount0
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isMerged
public boolean isMerged
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Method Detail
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getMeshSlicer
public MeshSlicer getMeshSlicer()
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newMesh
public static MeshSurface newMesh(boolean isAlt, javajs.util.T3[] vertices, int vertexCount, int[][] polygonIndexes, javajs.util.T3[] normals, int nNormals)
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getVertices
public javajs.util.T3[] getVertices()
- Returns:
- The vertices.
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getFaces
public int[][] getFaces()
- Returns:
- faces, if defined (in exporter), otherwise polygonIndexes
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setColix
public void setColix(short colix)
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setColixBack
public void setColixBack(short colix)
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addV
public int addV(javajs.util.T3 vertex, boolean asCopy)
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addTriangle
public void addTriangle(int vertexA, int vertexB, int vertexC)
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addQuad
public void addQuad(int vertexA, int vertexB, int vertexC, int vertexD)
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setPolygonCount
public void setPolygonCount(int polygonCount)
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addVCVal
public int addVCVal(javajs.util.T3 vertex, float value, boolean asCopy)
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addTriangleCheck
public int addTriangleCheck(int vertexA, int vertexB, int vertexC, int check, int iContour, int color)
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addPolygonV3
int addPolygonV3(int vertexA, int vertexB, int vertexC, int check, int iContour, int color, javajs.util.BS bs)
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addPolygonC
protected int addPolygonC(int[] polygon, int color, javajs.util.BS bs, boolean isExplicit)
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addPolygon
public int addPolygon(int[] polygon, javajs.util.BS bs)
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invalidatePolygons
public void invalidatePolygons()
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setABC
protected int[] setABC(int i)
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setTranslucentVertices
public void setTranslucentVertices(javajs.util.BS bsVertices)
Must create bsTransPolygons, polygonTranslucencies, and new triangle set for partially translucent polygons- Parameters:
bsVertices
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getSlabColor
public String getSlabColor()
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getSlabType
public String getSlabType()
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resetSlab
public void resetSlab()
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slabPolygonsList
public void slabPolygonsList(javajs.util.Lst<Object[]> slabInfo, boolean allowCap)
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slabBrillouin
protected void slabBrillouin(javajs.util.P3[] unitCellVectors)
- Parameters:
unitCellVectors
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getResolution
public float getResolution()
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getSphereData
public static MeshSurface getSphereData(int lvl)
Calculates the data (faces, vertices, normals) for a sphere.- Parameters:
lvl
-- Returns:
- The data.
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setBox
public void setBox(javajs.util.P3 xyzMin, javajs.util.P3 xyzMax)
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setBoundingBox
public void setBoundingBox(javajs.util.P3[] boundBoxPoints)
- Parameters:
boundBoxPoints
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getSphericalInterpolationFraction
public static float getSphericalInterpolationFraction(double r, double valueA, double valueB, double d)
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