Mock Version: 1.4.9
Mock Version: 1.4.9
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/exonerate.spec'], chrootPath='/var/lib/mock/f29-build-10554-4781/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fd7710>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/exonerate.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False
Building target platforms: riscv64
Building for target riscv64
Wrote: /builddir/build/SRPMS/exonerate-2.4.0-6.fc29.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/exonerate.spec'], chrootPath='/var/lib/mock/f29-build-10554-4781/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fd7710>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/exonerate.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False
Building target platforms: riscv64
Building for target riscv64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.W9oOhE
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf exonerate-2.4.0
+ /usr/bin/gzip -dc /builddir/build/SOURCES/exonerate-2.4.0.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd exonerate-2.4.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (exonerate-fix_nothread-compilation.patch):'
Patch #0 (exonerate-fix_nothread-compilation.patch):
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file src/general/jobqueue.c
Patch #1 (exonerate-fix-nothread-concurrent-connections.patch):
+ echo 'Patch #1 (exonerate-fix-nothread-concurrent-connections.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file src/general/socket.c
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Msv148
+ umask 022
+ cd /builddir/build/BUILD
+ cd exonerate-2.4.0
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ '[' 1 = 1 ']'
BUILDSTDERR: +++ dirname ./configure
BUILDSTDERR: ++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
BUILDSTDERR: ++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
BUILDSTDERR: ++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
BUILDSTDERR: ++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
BUILDSTDERR: ++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
BUILDSTDERR: ++ find . -name ltmain.sh
+ ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-glib2 --disable-assert --enable-paranoia --disable-gprof --disable-gcov --enable-compiledmodels --enable-utilities --disable-pthreads --enable-largefile
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking whether make sets $(MAKE)... yes
checking for working aclocal-1.4... missing
checking for working autoconf... missing
checking for working automake-1.4... missing
checking for working autoheader... missing
checking for working makeinfo... missing
checking for riscv64-koji-linux-gnu-gcc... no
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for a BSD-compatible install... /usr/bin/install -c
checking whether make sets $(MAKE)... (cached) yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking for strings.h... (cached) yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for sys/stat.h... (cached) yes
checking for sys/types.h... (cached) yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking for unistd.h... (cached) yes
checking build system type... riscv64-koji-linux-gnu
checking host system type... riscv64-koji-linux-gnu
Set host to riscv64-koji-linux-gnu
riscv64-koji-linux-gnu
*** Unknown build platform: riscv64-koji-linux-gnu ***
Set source_root_dir to /builddir/build/BUILD/exonerate-2.4.0
----------------------------------------------------------------
checking for socklen_t... yes
checking for pkg-config... /usr/bin/pkg-config
Using GLIB-2
Turning assertions off
Turning PARANOID options on
Not using options for profiling with gprof
Not using options for analysis with gcov
Adding support for LARGE FILES (>2Gb) for a 32 bit system
Using COMPILED C4 MODELS
Installing UTILITIES
Not using pthreads
----------------------------------------------------------------
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/man/Makefile
config.status: creating doc/man/man1/Makefile
config.status: creating src/Makefile
config.status: creating src/general/Makefile
config.status: creating src/sequence/Makefile
config.status: creating src/database/Makefile
config.status: creating src/struct/Makefile
config.status: creating src/comparison/Makefile
config.status: creating src/c4/Makefile
config.status: creating src/bsdp/Makefile
config.status: creating src/sdp/Makefile
config.status: creating src/hub/Makefile
config.status: creating src/model/Makefile
config.status: creating src/program/Makefile
config.status: creating src/util/Makefile
config.status: creating test/Makefile
config.status: creating test/util/Makefile
config.status: creating test/ipcress/Makefile
config.status: creating test/exonerate/Makefile
config.status: creating test/data/Makefile
config.status: creating test/data/cdna/Makefile
config.status: creating test/data/protein/Makefile
+ export 'C4_COMPILED_MODELS=est2genome protein2genome cdna2genome coding2genome'
+ C4_COMPILED_MODELS='est2genome protein2genome cdna2genome coding2genome'
BUILDSTDERR: ++ pkg-config --cflags glib-2.0
+ make -j1 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include ' 'LDFLAGS=-Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now'
Making all in doc
make[1]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc'
Making all in man
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man'
Making all in man1
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man/man1'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man/man1'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man'
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc'
make[1]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc'
Making all in src
make[1]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src'
Making all in struct
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/struct'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fsm.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fsm.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c recyclebin.c
BUILDSTDERR: recyclebin.c: In function 'RecycleBin_profile':
BUILDSTDERR: recyclebin.c:146:9: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          g_tree_traverse(global_recycle_bin_tree,
BUILDSTDERR:          ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:88,
BUILDSTDERR:                  from recyclebin.h:23,
BUILDSTDERR:                  from recyclebin.c:17:
BUILDSTDERR: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here
BUILDSTDERR:  void     g_tree_traverse        (GTree            *tree,
BUILDSTDERR:           ^~~~~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fsm.test  fsm.test.o fsm.o recyclebin.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c matrix.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c matrix.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o matrix.test  matrix.test.o matrix.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c pqueue.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c pqueue.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o pqueue.test  pqueue.test.o pqueue.o recyclebin.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c slist.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c slist.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o slist.test  slist.test.o slist.o recyclebin.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c rangetree.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c rangetree.c
BUILDSTDERR: rangetree.c: In function 'RangeTree_insert_recent':
BUILDSTDERR: rangetree.c:151:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_tree_traverse(rt->recent_data, RangeTree_insert_recent_collect,
BUILDSTDERR:      ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:88,
BUILDSTDERR:                  from rangetree.h:23,
BUILDSTDERR:                  from rangetree.c:18:
BUILDSTDERR: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here
BUILDSTDERR:  void     g_tree_traverse        (GTree            *tree,
BUILDSTDERR:           ^~~~~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o rangetree.test  rangetree.test.o rangetree.o recyclebin.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c vfsm.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c vfsm.c
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:62,
BUILDSTDERR:                  from vfsm.h:19,
BUILDSTDERR:                  from vfsm.c:25:
BUILDSTDERR: vfsm.c: In function 'VFSM_info':
BUILDSTDERR: vfsm.c:83:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 9 has type 'VFSM_Int' {aka 'long unsigned int'} [-Wformat=]
BUILDSTDERR:      g_message("VFSM info:\n"
BUILDSTDERR:                ^~~~~~~~~~~~~~
BUILDSTDERR: vfsm.c:99:12:
BUILDSTDERR:             vfsm->prs,
BUILDSTDERR:             ~~~~~~~~~
BUILDSTDERR: /usr/include/glib-2.0/glib/gmessages.h:333:32: note: in definition of macro 'g_message'
BUILDSTDERR:                                 __VA_ARGS__)
BUILDSTDERR:                                 ^~~~~~~~~~~
BUILDSTDERR: vfsm.c:83:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 10 has type 'VFSM_Int' {aka 'long unsigned int'} [-Wformat=]
BUILDSTDERR:      g_message("VFSM info:\n"
BUILDSTDERR:                ^~~~~~~~~~~~~~
BUILDSTDERR: vfsm.c:100:12:
BUILDSTDERR:             vfsm->prw,
BUILDSTDERR:             ~~~~~~~~~
BUILDSTDERR: /usr/include/glib-2.0/glib/gmessages.h:333:32: note: in definition of macro 'g_message'
BUILDSTDERR:                                 __VA_ARGS__)
BUILDSTDERR:                                 ^~~~~~~~~~~
BUILDSTDERR: vfsm.c:83:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 11 has type 'VFSM_Int' {aka 'long unsigned int'} [-Wformat=]
BUILDSTDERR:      g_message("VFSM info:\n"
BUILDSTDERR:                ^~~~~~~~~~~~~~
BUILDSTDERR: vfsm.c:101:12:
BUILDSTDERR:             vfsm->lrs,
BUILDSTDERR:             ~~~~~~~~~
BUILDSTDERR: /usr/include/glib-2.0/glib/gmessages.h:333:32: note: in definition of macro 'g_message'
BUILDSTDERR:                                 __VA_ARGS__)
BUILDSTDERR:                                 ^~~~~~~~~~~
BUILDSTDERR: vfsm.c:83:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 12 has type 'VFSM_Int' {aka 'long unsigned int'} [-Wformat=]
BUILDSTDERR:      g_message("VFSM info:\n"
BUILDSTDERR:                ^~~~~~~~~~~~~~
BUILDSTDERR: vfsm.c:102:12:
BUILDSTDERR:             vfsm->lrw,
BUILDSTDERR:             ~~~~~~~~~
BUILDSTDERR: /usr/include/glib-2.0/glib/gmessages.h:333:32: note: in definition of macro 'g_message'
BUILDSTDERR:                                 __VA_ARGS__)
BUILDSTDERR:                                 ^~~~~~~~~~~
BUILDSTDERR: vfsm.c:83:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 13 has type 'VFSM_Int' {aka 'long unsigned int'} [-Wformat=]
BUILDSTDERR:      g_message("VFSM info:\n"
BUILDSTDERR:                ^~~~~~~~~~~~~~
BUILDSTDERR: vfsm.c:103:12:
BUILDSTDERR:             vfsm->total
BUILDSTDERR:             ~~~~~~~~~~~
BUILDSTDERR: /usr/include/glib-2.0/glib/gmessages.h:333:32: note: in definition of macro 'g_message'
BUILDSTDERR:                                 __VA_ARGS__)
BUILDSTDERR:                                 ^~~~~~~~~~~
BUILDSTDERR: vfsm.c:107:17: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'VFSM_Int' {aka 'long unsigned int'} [-Wformat=]
BUILDSTDERR:          g_print("  branch_size [%d] [%" VFSM_PRINT_FORMAT "]\n",
BUILDSTDERR:                  ^~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:                  i, vfsm->branch_size[i]);
BUILDSTDERR:                     ~~~~~~~~~~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o vfsm.test  vfsm.test.o vfsm.o -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c recyclebin.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o recyclebin.test  recyclebin.test.o recyclebin.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c sparsecache.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c sparsecache.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o sparsecache.test  sparsecache.test.o sparsecache.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c dejavu.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c dejavu.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o dejavu.test  dejavu.test.o dejavu.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c bitarray.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c bitarray.c
BUILDSTDERR: bitarray.c: In function 'BitArray_read':
BUILDSTDERR: bitarray.c:83:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(ba->data, sizeof(guchar), size, fp);
BUILDSTDERR:      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: bitarray.c: In function 'BitArray_read_int':
BUILDSTDERR: bitarray.c:189:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&num, sizeof(guint64), 1, fp);
BUILDSTDERR:      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o bitarray.test  bitarray.test.o bitarray.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c splaytree.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c splaytree.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o splaytree.test  splaytree.test.o splaytree.o recyclebin.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c noitree.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c noitree.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o noitree.test  noitree.test.o noitree.o recyclebin.o splaytree.o -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/struct'
Making all in general
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/general'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c argument.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c argument.c
BUILDSTDERR: argument.c: In function 'ArgumentParse_boolean':
BUILDSTDERR: argument.c:138:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          if(!g_strcasecmp(arg_string, true_string[i]))
BUILDSTDERR:          ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from argument.h:26,
BUILDSTDERR:                  from argument.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: argument.c:140:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          if(!g_strcasecmp(arg_string, false_string[i]))
BUILDSTDERR:          ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from argument.h:26,
BUILDSTDERR:                  from argument.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: argument.c: In function 'Argument_process':
BUILDSTDERR: argument.c:502:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_tree_traverse(arg->option_registry, Argument_set_env_var_func,
BUILDSTDERR:      ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:88,
BUILDSTDERR:                  from argument.h:26,
BUILDSTDERR:                  from argument.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here
BUILDSTDERR:  void     g_tree_traverse        (GTree            *tree,
BUILDSTDERR:           ^~~~~~~~~~~~~~~
BUILDSTDERR: argument.c:559:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_tree_traverse(arg->option_registry,
BUILDSTDERR:      ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:88,
BUILDSTDERR:                  from argument.h:26,
BUILDSTDERR:                  from argument.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here
BUILDSTDERR:  void     g_tree_traverse        (GTree            *tree,
BUILDSTDERR:           ^~~~~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o argument.test  argument.test.o argument.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c lineparse.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c lineparse.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o lineparse.test  lineparse.test.o lineparse.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c compoundfile.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c compoundfile.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o compoundfile.test  compoundfile.test.o compoundfile.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c socket.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c socket.c
BUILDSTDERR: socket.c: In function 'SocketServer_listen':
BUILDSTDERR: socket.c:341:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
BUILDSTDERR:      while (msgsock = accept(server->connection->sock,
BUILDSTDERR:             ^~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o socket.test  socket.test.o socket.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c jobqueue.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c jobqueue.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o jobqueue.test  jobqueue.test.o jobqueue.o ../../src/struct/pqueue.o                           ../../src/struct/recyclebin.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c threadref.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""            -I../../src/struct    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c threadref.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o threadref.test  threadref.test.o threadref.o -lpthread -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/general'
Making all in sequence
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/sequence'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c sequence.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c sequence.c
BUILDSTDERR: sequence.c: In function 'Sequence_destroy_annotation_tree':
BUILDSTDERR: sequence.c:97:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_tree_traverse(tree, Sequence_destroy_annotation_data,
BUILDSTDERR:      ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:88,
BUILDSTDERR:                  from sequence.h:24,
BUILDSTDERR:                  from sequence.c:21:
BUILDSTDERR: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here
BUILDSTDERR:  void     g_tree_traverse        (GTree            *tree,
BUILDSTDERR:           ^~~~~~~~~~~~~~~
BUILDSTDERR: sequence.c: In function 'Sequence_lock':
BUILDSTDERR: sequence.c:813:24: warning: unused variable 'revcomp' [-Wunused-variable]
BUILDSTDERR:      register Sequence *revcomp;
BUILDSTDERR:                         ^~~~~~~
BUILDSTDERR: sequence.c:812:36: warning: unused variable 'translation' [-Wunused-variable]
BUILDSTDERR:      register Sequence_Translation *translation;
BUILDSTDERR:                                     ^~~~~~~~~~~
BUILDSTDERR: sequence.c:811:31: warning: unused variable 'filter' [-Wunused-variable]
BUILDSTDERR:      register Sequence_Filter *filter;
BUILDSTDERR:                                ^~~~~~
BUILDSTDERR: sequence.c:810:31: warning: unused variable 'subseq' [-Wunused-variable]
BUILDSTDERR:      register Sequence_Subseq *subseq;
BUILDSTDERR:                                ^~~~~~
BUILDSTDERR: sequence.c: In function 'Sequence_unlock':
BUILDSTDERR: sequence.c:852:24: warning: unused variable 'revcomp' [-Wunused-variable]
BUILDSTDERR:      register Sequence *revcomp;
BUILDSTDERR:                         ^~~~~~~
BUILDSTDERR: sequence.c:851:36: warning: unused variable 'translation' [-Wunused-variable]
BUILDSTDERR:      register Sequence_Translation *translation;
BUILDSTDERR:                                     ^~~~~~~~~~~
BUILDSTDERR: sequence.c:850:31: warning: unused variable 'filter' [-Wunused-variable]
BUILDSTDERR:      register Sequence_Filter *filter;
BUILDSTDERR:                                ^~~~~~
BUILDSTDERR: sequence.c:849:31: warning: unused variable 'subseq' [-Wunused-variable]
BUILDSTDERR:      register Sequence_Subseq *subseq;
BUILDSTDERR:                                ^~~~~~
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c alphabet.c
BUILDSTDERR: alphabet.c: In function 'Alphabet_name_get_type':
BUILDSTDERR: alphabet.c:317:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          if(!g_strcasecmp(name, dna_string[i]))
BUILDSTDERR:          ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from alphabet.h:24,
BUILDSTDERR:                  from alphabet.c:19:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: alphabet.c:320:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          if(!g_strcasecmp(name, protein_string[i]))
BUILDSTDERR:          ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from alphabet.h:24,
BUILDSTDERR:                  from alphabet.c:19:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: alphabet.c:323:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          if(!g_strcasecmp(name, unknown_string[i]))
BUILDSTDERR:          ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from alphabet.h:24,
BUILDSTDERR:                  from alphabet.c:19:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c translate.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c splice.c
BUILDSTDERR: splice.c: In function 'SplicePredictor_parse_data':
BUILDSTDERR: splice.c:146:17: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:                  if(!g_strcasecmp(word, "splice"))
BUILDSTDERR:                  ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from splice.h:23,
BUILDSTDERR:                  from splice.c:22:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: splice.c: In function 'SplicePredictor_add_5SS_data':
BUILDSTDERR: splice.c:195:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      if((!path) || (!strlen(path)) || (!g_strcasecmp(path, "primate")))
BUILDSTDERR:      ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from splice.h:23,
BUILDSTDERR:                  from splice.c:22:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: splice.c: In function 'SplicePredictor_add_3SS_data':
BUILDSTDERR: splice.c:203:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      if((!path) || (!strlen(path)) || (!g_strcasecmp(path, "primate")))
BUILDSTDERR:      ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from splice.h:23,
BUILDSTDERR:                  from splice.c:22:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o sequence.test  sequence.test.o sequence.o alphabet.o translate.o splice.o ../../src/struct/matrix.o                   ../../src/struct/sparsecache.o              ../../src/general/argument.o                ../../src/general/lineparse.o               -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c submat.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c submat.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o submat.test  submat.test.o submat.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c translate.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o translate.test  translate.test.o translate.o ../../src/general/argument.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c splice.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o splice.test  splice.test.o splice.o ../../src/struct/matrix.o                   ../../src/struct/sparsecache.o              ../../src/general/argument.o                ../../src/general/lineparse.o               -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c alphabet.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o alphabet.test  alphabet.test.o alphabet.o ../../src/general/argument.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c codonsubmat.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c codonsubmat.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o codonsubmat.test  codonsubmat.test.o codonsubmat.o ../../src/general/argument.o -lm -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/sequence'
Making all in comparison
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/comparison'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c wordhood.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c wordhood.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o wordhood.test  wordhood.test.o wordhood.o ../../src/sequence/submat.o                            ../../src/sequence/codonsubmat.o                       ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c hspset.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c hspset.c
BUILDSTDERR: hspset.c: In function 'HSP_Display_insert':
BUILDSTDERR: hspset.c:637:9: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          g_strdown(query_str);
BUILDSTDERR:          ^~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from hspset.h:26,
BUILDSTDERR:                  from hspset.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:208:23: note: declared here
BUILDSTDERR:  gchar*                g_strdown        (gchar       *string);
BUILDSTDERR:                        ^~~~~~~~~
BUILDSTDERR: hspset.c:638:9: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          g_strdown(target_str);
BUILDSTDERR:          ^~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from hspset.h:26,
BUILDSTDERR:                  from hspset.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:208:23: note: declared here
BUILDSTDERR:  gchar*                g_strdown        (gchar       *string);
BUILDSTDERR:                        ^~~~~~~~~
BUILDSTDERR: hspset.c:640:9: warning: 'g_strup' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          g_strup(query_str);
BUILDSTDERR:          ^~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from hspset.h:26,
BUILDSTDERR:                  from hspset.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:210:23: note: declared here
BUILDSTDERR:  gchar*                g_strup          (gchar       *string);
BUILDSTDERR:                        ^~~~~~~
BUILDSTDERR: hspset.c:641:9: warning: 'g_strup' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          g_strup(target_str);
BUILDSTDERR:          ^~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from hspset.h:26,
BUILDSTDERR:                  from hspset.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:210:23: note: declared here
BUILDSTDERR:  gchar*                g_strup          (gchar       *string);
BUILDSTDERR:                        ^~~~~~~
BUILDSTDERR: hspset.c: In function 'HSPset_seed_all_hsps':
BUILDSTDERR: hspset.c:1098:25: warning: variable 'tpos' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register gint qpos, tpos;
BUILDSTDERR:                          ^~~~
BUILDSTDERR: hspset.c:1098:19: warning: variable 'qpos' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register gint qpos, tpos;
BUILDSTDERR:                    ^~~~
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c match.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o hspset.test  hspset.test.o hspset.o match.o wordhood.o ../../src/sequence/submat.o                          ../../src/sequence/codonsubmat.o                     ../../src/struct/pqueue.o                            ../../src/struct/recyclebin.o                        ../../src/general/threadref.o                        ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c pcr.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c pcr.c
BUILDSTDERR: pcr.c: In function 'PCR_Match_allocate':
BUILDSTDERR: pcr.c:31:9: warning: 'g_mem_chunk_alloc' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          pcr_match = g_chunk_new(PCR_Match, pcr->match_mem_chunk);
BUILDSTDERR:          ^~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:103,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/deprecated/gallocator.h:50:17: note: declared here
BUILDSTDERR:  gpointer        g_mem_chunk_alloc       (GMemChunk    *mem_chunk);
BUILDSTDERR:                  ^~~~~~~~~~~~~~~~~
BUILDSTDERR: pcr.c: In function 'PCR_Probe_create':
BUILDSTDERR: pcr.c:59:5: warning: 'g_mem_chunk_alloc' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      register PCR_Probe *pcr_probe = g_chunk_new(PCR_Probe,
BUILDSTDERR:      ^~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:103,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/deprecated/gallocator.h:50:17: note: declared here
BUILDSTDERR:  gpointer        g_mem_chunk_alloc       (GMemChunk    *mem_chunk);
BUILDSTDERR:                  ^~~~~~~~~~~~~~~~~
BUILDSTDERR: pcr.c: In function 'PCR_Probe_destroy':
BUILDSTDERR: pcr.c:69:5: warning: 'g_mem_chunk_free' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_mem_chunk_free(pcr->probe_mem_chunk, pcr_probe);
BUILDSTDERR:      ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:103,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/deprecated/gallocator.h:54:17: note: declared here
BUILDSTDERR:  void            g_mem_chunk_free        (GMemChunk    *mem_chunk,
BUILDSTDERR:                  ^~~~~~~~~~~~~~~~
BUILDSTDERR: pcr.c: In function 'PCR_Sensor_create':
BUILDSTDERR: pcr.c:155:5: warning: 'g_mem_chunk_alloc' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      register PCR_Sensor *pcr_sensor = g_chunk_new(PCR_Sensor,
BUILDSTDERR:      ^~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:103,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/deprecated/gallocator.h:50:17: note: declared here
BUILDSTDERR:  gpointer        g_mem_chunk_alloc       (GMemChunk    *mem_chunk);
BUILDSTDERR:                  ^~~~~~~~~~~~~~~~~
BUILDSTDERR: pcr.c: In function 'PCR_Sensor_destroy':
BUILDSTDERR: pcr.c:174:5: warning: 'g_mem_chunk_free' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_mem_chunk_free(pcr->sensor_mem_chunk, pcr_sensor);
BUILDSTDERR:      ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:103,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/deprecated/gallocator.h:54:17: note: declared here
BUILDSTDERR:  void            g_mem_chunk_free        (GMemChunk    *mem_chunk,
BUILDSTDERR:                  ^~~~~~~~~~~~~~~~
BUILDSTDERR: pcr.c: In function 'PCR_Primer_create':
BUILDSTDERR: pcr.c:252:5: warning: 'g_strup' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_strup(pcr_primer->forward);
BUILDSTDERR:      ^~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:210:23: note: declared here
BUILDSTDERR:  gchar*                g_strup          (gchar       *string);
BUILDSTDERR:                        ^~~~~~~
BUILDSTDERR: pcr.c:253:5: warning: 'g_strup' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_strup(pcr_primer->revcomp);
BUILDSTDERR:      ^~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:210:23: note: declared here
BUILDSTDERR:  gchar*                g_strup          (gchar       *string);
BUILDSTDERR:                        ^~~~~~~
BUILDSTDERR: pcr.c: In function 'PCR_create':
BUILDSTDERR: pcr.c:357:5: warning: 'g_mem_chunk_new' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      pcr->sensor_mem_chunk = g_mem_chunk_new("PCR_Sensor",
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:103,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/deprecated/gallocator.h:43:17: note: declared here
BUILDSTDERR:  GMemChunk *     g_mem_chunk_new         (const gchar  *name,
BUILDSTDERR:                  ^~~~~~~~~~~~~~~
BUILDSTDERR: pcr.c:363:5: warning: 'g_mem_chunk_new' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      pcr->probe_mem_chunk = g_mem_chunk_new("PCR_Probe",
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:103,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/deprecated/gallocator.h:43:17: note: declared here
BUILDSTDERR:  GMemChunk *     g_mem_chunk_new         (const gchar  *name,
BUILDSTDERR:                  ^~~~~~~~~~~~~~~
BUILDSTDERR: pcr.c:366:5: warning: 'g_mem_chunk_new' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      pcr->match_mem_chunk = g_mem_chunk_new("PCR_Match",
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:103,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/deprecated/gallocator.h:43:17: note: declared here
BUILDSTDERR:  GMemChunk *     g_mem_chunk_new         (const gchar  *name,
BUILDSTDERR:                  ^~~~~~~~~~~~~~~
BUILDSTDERR: pcr.c: In function 'PCR_destroy':
BUILDSTDERR: pcr.c:381:5: warning: 'g_mem_chunk_destroy' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_mem_chunk_destroy(pcr->sensor_mem_chunk);
BUILDSTDERR:      ^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:103,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/deprecated/gallocator.h:48:17: note: declared here
BUILDSTDERR:  void            g_mem_chunk_destroy     (GMemChunk    *mem_chunk);
BUILDSTDERR:                  ^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: pcr.c:383:5: warning: 'g_mem_chunk_destroy' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_mem_chunk_destroy(pcr->probe_mem_chunk);
BUILDSTDERR:      ^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:103,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/deprecated/gallocator.h:48:17: note: declared here
BUILDSTDERR:  void            g_mem_chunk_destroy     (GMemChunk    *mem_chunk);
BUILDSTDERR:                  ^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: pcr.c:384:5: warning: 'g_mem_chunk_destroy' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_mem_chunk_destroy(pcr->match_mem_chunk);
BUILDSTDERR:      ^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:103,
BUILDSTDERR:                  from pcr.h:23,
BUILDSTDERR:                  from pcr.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/deprecated/gallocator.h:48:17: note: declared here
BUILDSTDERR:  void            g_mem_chunk_destroy     (GMemChunk    *mem_chunk);
BUILDSTDERR:                  ^~~~~~~~~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o pcr.test  pcr.test.o pcr.o wordhood.o ../../src/sequence/submat.o                       ../../src/sequence/codonsubmat.o                  ../../src/struct/fsm.o                            ../../src/struct/slist.o                          ../../src/struct/recyclebin.o                     ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c comparison.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c comparison.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o comparison.test  comparison.test.o comparison.o hspset.o match.o wordhood.o ../../src/sequence/submat.o                               ../../src/sequence/codonsubmat.o                          ../../src/struct/recyclebin.o                             ../../src/struct/pqueue.o                                 ../../src/general/threadref.o                             ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c match.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o match.test  match.test.o match.o ../../src/sequence/submat.o                         ../../src/sequence/codonsubmat.o                    ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c seeder.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence            -I../../src/struct              -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c seeder.c
BUILDSTDERR: seeder.c: In function 'Seeder_decide_fsm_type':
BUILDSTDERR: seeder.c:268:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      if(!g_strcasecmp(force_fsm, "none"))
BUILDSTDERR:      ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from seeder.h:23,
BUILDSTDERR:                  from seeder.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: seeder.c:273:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      if(!g_strcasecmp(force_fsm, "normal"))
BUILDSTDERR:      ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from seeder.h:23,
BUILDSTDERR:                  from seeder.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: seeder.c:275:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      if(!g_strcasecmp(force_fsm, "compact"))
BUILDSTDERR:      ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from seeder.h:23,
BUILDSTDERR:                  from seeder.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o seeder.test  seeder.test.o seeder.o wordhood.o hspset.o match.o comparison.o ../../src/sequence/submat.o                          ../../src/sequence/codonsubmat.o                     ../../src/struct/recyclebin.o                        ../../src/struct/fsm.o                               ../../src/struct/vfsm.o                              ../../src/struct/pqueue.o                            ../../src/general/threadref.o                        ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/comparison'
Making all in database
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/database'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/struct                -I../../src/general               -I../../src/comparison            -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastadb.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/struct                -I../../src/general               -I../../src/comparison            -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastadb.c
BUILDSTDERR: fastadb.c: In function 'FastaDB_SparseCache_fill_func':
BUILDSTDERR: fastadb.c:1006:29: warning: variable 'db_end' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register gint db_start, db_end;
BUILDSTDERR:                              ^~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastadb.test  fastadb.test.o fastadb.o ../../src/general/compoundfile.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/struct                -I../../src/general               -I../../src/comparison            -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastapipe.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/struct                -I../../src/general               -I../../src/comparison            -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastapipe.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastapipe.test  fastapipe.test.o fastapipe.o fastadb.o                                                   ../../src/general/compoundfile.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/struct                -I../../src/general               -I../../src/comparison            -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c dataset.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/struct                -I../../src/general               -I../../src/comparison            -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c dataset.c
BUILDSTDERR: dataset.c: In function 'Dataset_info':
BUILDSTDERR: dataset.c:305:13: warning: format '%lld' expects argument of type 'long long int', but argument 6 has type 'guint64' {aka 'long unsigned int'} [-Wformat=]
BUILDSTDERR:      g_print("Sequence Dataset:\n"
BUILDSTDERR:              ^~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: dataset.c:316:13:
BUILDSTDERR:              dataset->header->number_of_seqs,
BUILDSTDERR:              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: dataset.c:310:39: note: format string is defined here
BUILDSTDERR:              " number of sequences: %lld\n"
BUILDSTDERR:                                     ~~~^
BUILDSTDERR:                                     %ld
BUILDSTDERR: dataset.c:305:13: warning: format '%lld' expects argument of type 'long long int', but argument 7 has type 'guint64' {aka 'long unsigned int'} [-Wformat=]
BUILDSTDERR:      g_print("Sequence Dataset:\n"
BUILDSTDERR:              ^~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: dataset.c:317:13:
BUILDSTDERR:              dataset->header->max_seq_len);
BUILDSTDERR:              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: dataset.c:311:39: note: format string is defined here
BUILDSTDERR:              "    longest sequence: %lld\n\n",
BUILDSTDERR:                                     ~~~^
BUILDSTDERR:                                     %ld
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o dataset.test  dataset.test.o dataset.o fastadb.o                                                     ../../src/general/compoundfile.o                      ../../src/struct/bitarray.o                           ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/struct                -I../../src/general               -I../../src/comparison            -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c index.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/struct                -I../../src/general               -I../../src/comparison            -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c index.c
BUILDSTDERR: index.c: In function 'Index_visit_words':
BUILDSTDERR: index.c:304:32: warning: variable 'dataset_seq' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register Dataset_Sequence *dataset_seq;
BUILDSTDERR:                                 ^~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:62,
BUILDSTDERR:                  from index.h:24,
BUILDSTDERR:                  from index.c:21:
BUILDSTDERR: index.c: In function 'Index_desaturate':
BUILDSTDERR: index.c:377:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'gint64' {aka 'long int'} [-Wformat=]
BUILDSTDERR:      g_message("Removed [%" CUSTOM_GUINT64_FORMAT
BUILDSTDERR:                ^~~~~~~~~~~~
BUILDSTDERR: index.c:379:15:
BUILDSTDERR:                removed_words, removed_instances);
BUILDSTDERR:                ~~~~~~~~~~~~~
BUILDSTDERR: /usr/include/glib-2.0/glib/gmessages.h:333:32: note: in definition of macro 'g_message'
BUILDSTDERR:                                 __VA_ARGS__)
BUILDSTDERR:                                 ^~~~~~~~~~~
BUILDSTDERR: index.c:377:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 5 has type 'gint64' {aka 'long int'} [-Wformat=]
BUILDSTDERR:      g_message("Removed [%" CUSTOM_GUINT64_FORMAT
BUILDSTDERR:                ^~~~~~~~~~~~
BUILDSTDERR: index.c:379:30:
BUILDSTDERR:                removed_words, removed_instances);
BUILDSTDERR:                               ~~~~~~~~~~~~~~~~~
BUILDSTDERR: /usr/include/glib-2.0/glib/gmessages.h:333:32: note: in definition of macro 'g_message'
BUILDSTDERR:                                 __VA_ARGS__)
BUILDSTDERR:                                 ^~~~~~~~~~~
BUILDSTDERR: index.c: In function 'Index_report_words_visit':
BUILDSTDERR: index.c:584:26: warning: variable 'index_word' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register Index_Word *index_word;
BUILDSTDERR:                           ^~~~~~~~~~
BUILDSTDERR: index.c: In function 'Index_open':
BUILDSTDERR: index.c:943:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(index->dataset_path, sizeof(gchar),
BUILDSTDERR:      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:            index->header->dataset_path_len, index->fp);
BUILDSTDERR:            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o index.test  index.test.o index.o fastadb.o dataset.o                                           ../../src/general/compoundfile.o                      ../../src/general/threadref.o                         ../../src/struct/bitarray.o                           ../../src/struct/vfsm.o                               ../../src/struct/pqueue.o                             ../../src/struct/recyclebin.o                         ../../src/struct/rangetree.o                          ../../src/struct/splaytree.o                          ../../src/struct/noitree.o                            ../../src/comparison/wordhood.o                       ../../src/comparison/hspset.o                         ../../src/comparison/match.o                          ../../src/sequence/submat.o                           ../../src/sequence/codonsubmat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/database'
Making all in c4
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/c4'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c region.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c region.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o region.test  region.test.o region.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c c4.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c c4.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o c4.test  c4.test.o c4.o region.o ../../src/struct/matrix.o                      ../../src/general/threadref.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c alignment.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c alignment.c
BUILDSTDERR: alignment.c: In function 'AlignmentView_add_SPLICE_SITE':
BUILDSTDERR: alignment.c:660:9: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          g_strdown(qy_seq_string);
BUILDSTDERR:          ^~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/comparison/match.h:23,
BUILDSTDERR:                  from alignment.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:208:23: note: declared here
BUILDSTDERR:  gchar*                g_strdown        (gchar       *string);
BUILDSTDERR:                        ^~~~~~~~~
BUILDSTDERR: alignment.c:667:9: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          g_strdown(tg_seq_string);
BUILDSTDERR:          ^~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/comparison/match.h:23,
BUILDSTDERR:                  from alignment.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:208:23: note: declared here
BUILDSTDERR:  gchar*                g_strdown        (gchar       *string);
BUILDSTDERR:                        ^~~~~~~~~
BUILDSTDERR: alignment.c:677:13: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:              g_strdown(qy_seq_string);
BUILDSTDERR:              ^~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/comparison/match.h:23,
BUILDSTDERR:                  from alignment.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:208:23: note: declared here
BUILDSTDERR:  gchar*                g_strdown        (gchar       *string);
BUILDSTDERR:                        ^~~~~~~~~
BUILDSTDERR: alignment.c:690:9: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          g_strdown(tg_seq_string);
BUILDSTDERR:          ^~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/comparison/match.h:23,
BUILDSTDERR:                  from alignment.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:208:23: note: declared here
BUILDSTDERR:  gchar*                g_strdown        (gchar       *string);
BUILDSTDERR:                        ^~~~~~~~~
BUILDSTDERR: alignment.c: In function 'AlignmentView_add_SPLIT_CODON':
BUILDSTDERR: alignment.c:987:5: warning: 'g_strup' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_strup(qy_codon);
BUILDSTDERR:      ^~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/comparison/match.h:23,
BUILDSTDERR:                  from alignment.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:210:23: note: declared here
BUILDSTDERR:  gchar*                g_strup          (gchar       *string);
BUILDSTDERR:                        ^~~~~~~
BUILDSTDERR: alignment.c:988:5: warning: 'g_strup' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_strup(tg_codon);
BUILDSTDERR:      ^~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/comparison/match.h:23,
BUILDSTDERR:                  from alignment.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:210:23: note: declared here
BUILDSTDERR:  gchar*                g_strup          (gchar       *string);
BUILDSTDERR:                        ^~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o alignment.test  alignment.test.o alignment.o c4.o region.o ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/general/threadref.o                    ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c codegen.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c codegen.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o codegen.test  codegen.test.o codegen.o ../../src/general/argument.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c optimal.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c optimal.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c layout.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c viterbi.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c subopt.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c cgutil.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o optimal.test  optimal.test.o optimal.o c4.o alignment.o codegen.o region.o layout.o viterbi.o subopt.o cgutil.o ../../src/struct/slist.o                           ../../src/struct/recyclebin.o                      ../../src/struct/rangetree.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/general/threadref.o                    ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c layout.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o layout.test  layout.test.o layout.o ../../src/struct/matrix.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c viterbi.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o viterbi.test  viterbi.test.o viterbi.o c4.o region.o alignment.o codegen.o layout.o subopt.o cgutil.o ../../src/struct/slist.o                           ../../src/struct/recyclebin.o                      ../../src/struct/rangetree.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/general/threadref.o                    ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c opair.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c opair.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o opair.test  opair.test.o opair.o optimal.o c4.o alignment.o codegen.o region.o layout.o viterbi.o subopt.o cgutil.o ../../src/struct/slist.o                         ../../src/struct/recyclebin.o                    ../../src/struct/rangetree.o                     ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/general/threadref.o                    ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c subopt.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o subopt.test  subopt.test.o subopt.o region.o ../../src/struct/rangetree.o                     ../../src/struct/recyclebin.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c cgutil.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o cgutil.test  cgutil.test.o cgutil.o codegen.o c4.o region.o ../../src/general/argument.o                      ../../src/struct/matrix.o                         ../../src/general/threadref.o -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/c4'
Making all in bsdp
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/bsdp'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c heuristic.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c heuristic.c
BUILDSTDERR: heuristic.c: In function 'Heuristic_Pair_get_max_range':
BUILDSTDERR: heuristic.c:759:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:          if((*max_query_join_range) < range);
BUILDSTDERR:          ^~
BUILDSTDERR: heuristic.c:760:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:             (*max_query_join_range) = range;
BUILDSTDERR:             ^
BUILDSTDERR: heuristic.c:762:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:          if((*max_target_join_range) < range);
BUILDSTDERR:          ^~
BUILDSTDERR: heuristic.c:763:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:             (*max_target_join_range) = range;
BUILDSTDERR:             ^
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o heuristic.test  heuristic.test.o heuristic.o ../../src/struct/slist.o                             ../../src/struct/recyclebin.o                        ../../src/struct/rangetree.o                         ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/c4/c4.o                 ../../src/c4/alignment.o          ../../src/c4/optimal.o            ../../src/c4/codegen.o            ../../src/c4/region.o             ../../src/c4/layout.o             ../../src/c4/viterbi.o            ../../src/c4/subopt.o             ../../src/c4/cgutil.o ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c bsdp.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c bsdp.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o bsdp.test  bsdp.test.o bsdp.o ../../src/general/argument.o                    ../../src/struct/pqueue.o                       ../../src/struct/recyclebin.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c hpair.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c hpair.c
BUILDSTDERR: hpair.c: In function 'HPair_next_path':
BUILDSTDERR: hpair.c:747:30: warning: variable 'src_node_data' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:                              *src_node_data, *dst_node_data;
BUILDSTDERR:                               ^~~~~~~~~~~~~
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c sar.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o hpair.test  hpair.test.o hpair.o heuristic.o bsdp.o sar.o ../../src/struct/slist.o                            ../../src/struct/pqueue.o                           ../../src/struct/recyclebin.o                       ../../src/struct/rangetree.o                        ../../src/comparison/hspset.o                       ../../src/comparison/wordhood.o                     ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/c4/c4.o                 ../../src/c4/alignment.o          ../../src/c4/optimal.o            ../../src/c4/codegen.o            ../../src/c4/region.o             ../../src/c4/layout.o             ../../src/c4/viterbi.o            ../../src/c4/subopt.o             ../../src/c4/cgutil.o ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c sar.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o sar.test  sar.test.o sar.o heuristic.o ../../src/struct/slist.o                       ../../src/struct/recyclebin.o                  ../../src/struct/rangetree.o                   ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/c4/c4.o                 ../../src/c4/alignment.o          ../../src/c4/optimal.o            ../../src/c4/codegen.o            ../../src/c4/region.o             ../../src/c4/layout.o             ../../src/c4/viterbi.o            ../../src/c4/subopt.o             ../../src/c4/cgutil.o ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/bsdp'
Making all in sdp
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/sdp'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c sdp.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c sdp.c
BUILDSTDERR: sdp.c: In function 'Scheduler_Seed_Boundary_get_forward':
BUILDSTDERR: sdp.c:264:24: warning: variable 'seed' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register SDP_Seed *seed;
BUILDSTDERR:                         ^~~~
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c boundary.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c scheduler.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c lookahead.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c straceback.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o sdp.test  sdp.test.o sdp.o boundary.o scheduler.o lookahead.o straceback.o ../../src/struct/pqueue.o                          ../../src/struct/recyclebin.o                      ../../src/struct/slist.o                           ../../src/struct/rangetree.o                       ../../src/comparison/hspset.o                      ../../src/comparison/comparison.o                  ../../src/comparison/wordhood.o                    ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/c4/c4.o                 ../../src/c4/alignment.o          ../../src/c4/optimal.o            ../../src/c4/codegen.o            ../../src/c4/region.o             ../../src/c4/layout.o             ../../src/c4/viterbi.o            ../../src/c4/subopt.o             ../../src/c4/cgutil.o ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c lookahead.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o lookahead.test  lookahead.test.o lookahead.o  -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c boundary.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o boundary.test  boundary.test.o boundary.o ../../src/general/argument.o                       ../../src/c4/region.o -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c scheduler.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o scheduler.test  scheduler.test.o scheduler.o lookahead.o boundary.o straceback.o ../../src/struct/recyclebin.o                            ../../src/struct/slist.o                                 ../../src/struct/rangetree.o                             ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/c4/c4.o                 ../../src/c4/alignment.o          ../../src/c4/optimal.o            ../../src/c4/codegen.o            ../../src/c4/region.o             ../../src/c4/layout.o             ../../src/c4/viterbi.o            ../../src/c4/subopt.o             ../../src/c4/cgutil.o ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/struct                           -I../../src/comparison                       -I../../src/sequence                         -I../../src/general                          -I../../src/c4                               -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""                    -DHOSTTYPE="\"riscv64-koji-linux-gnu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c straceback.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o straceback.test  straceback.test.o straceback.o ../../src/struct/recyclebin.o                         ../../src/struct/slist.o                              ../../src/struct/rangetree.o                          ../../src/c4/c4.o                 ../../src/c4/alignment.o          ../../src/c4/optimal.o            ../../src/c4/codegen.o            ../../src/c4/region.o             ../../src/c4/layout.o             ../../src/c4/viterbi.o            ../../src/c4/subopt.o             ../../src/c4/cgutil.o ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/sdp'
Making all in model
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/model'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c edit_distance.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c edit_distance.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o edit_distance.test  edit_distance.test.o edit_distance.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c affine.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c affine.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c ungapped.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o affine.test  affine.test.o affine.o ungapped.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c protein2dna.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c protein2dna.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c frameshift.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o protein2dna.test  protein2dna.test.o protein2dna.o affine.o ungapped.o frameshift.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c ner.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c ner.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o ner.test  ner.test.o ner.o affine.o ungapped.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c est2genome.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c est2genome.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c intron.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o est2genome.test  est2genome.test.o est2genome.o affine.o ungapped.o intron.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c ungapped.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o ungapped.test  ungapped.test.o ungapped.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c intron.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o intron.test  intron.test.o intron.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c protein2genome.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c protein2genome.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c phase.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o protein2genome.test  protein2genome.test.o protein2genome.o protein2dna.o ungapped.o intron.o affine.o frameshift.o phase.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c coding2coding.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c coding2coding.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o coding2coding.test  coding2coding.test.o coding2coding.o affine.o ungapped.o frameshift.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c frameshift.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o frameshift.test  frameshift.test.o frameshift.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c coding2genome.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c coding2genome.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o coding2genome.test  coding2genome.test.o coding2genome.o coding2coding.o affine.o ungapped.o frameshift.o intron.o phase.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c cdna2genome.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c cdna2genome.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o cdna2genome.test  cdna2genome.test.o cdna2genome.o affine.o ungapped.o frameshift.o intron.o phase.o coding2coding.o coding2genome.o est2genome.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c genome2genome.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c genome2genome.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o genome2genome.test  genome2genome.test.o genome2genome.o coding2coding.o affine.o ungapped.o frameshift.o intron.o phase.o coding2genome.o cdna2genome.o est2genome.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c phase.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o phase.test  phase.test.o phase.o intron.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c modeltype.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c modeltype.c
BUILDSTDERR: modeltype.c: In function 'Model_Type_from_string':
BUILDSTDERR: modeltype.c:121:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          if(!g_strcasecmp(name[i], str))
BUILDSTDERR:          ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/c4/c4.h:23,
BUILDSTDERR:                  from modeltype.h:23,
BUILDSTDERR:                  from modeltype.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: modeltype.c:124:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          if(!g_strcasecmp(short_name[i], str))
BUILDSTDERR:          ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/c4/c4.h:23,
BUILDSTDERR:                  from modeltype.h:23,
BUILDSTDERR:                  from modeltype.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o modeltype.test  modeltype.test.o modeltype.o ungapped.o affine.o est2genome.o ner.o protein2dna.o protein2genome.o coding2coding.o coding2genome.o genome2genome.o cdna2genome.o frameshift.o phase.o intron.o ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/c4                               -I../../src/bsdp                             -I../../src/sdp                              -I../../src/sequence                         -I../../src/general                          -I../../src/comparison                       -I../../src/struct                           -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include \""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c bootstrapper.c
BUILDSTDERR: bootstrapper.c: In function 'Argument_main':
BUILDSTDERR: bootstrapper.c:421:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      if((!models) || (!g_strcasecmp(models, "all")))
BUILDSTDERR:      ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/c4/c4.h:23,
BUILDSTDERR:                  from ungapped.h:23,
BUILDSTDERR:                  from bootstrapper.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o bootstrapper  bootstrapper.o modeltype.o ungapped.o affine.o est2genome.o ner.o protein2dna.o protein2genome.o coding2coding.o coding2genome.o genome2genome.o cdna2genome.o frameshift.o intron.o phase.o ../../src/struct/pqueue.o                               ../../src/comparison/comparison.o                       ../../src/comparison/hspset.o                           ../../src/comparison/wordhood.o                         ../../src/bsdp/heuristic.o                              ../../src/sdp/sdp.o                                     ../../src/sdp/scheduler.o                               ../../src/sdp/straceback.o                              ../../src/sdp/lookahead.o                               ../../src/sdp/boundary.o                                ../../src/struct/slist.o                    ../../src/struct/rangetree.o                ../../src/struct/recyclebin.o               ../../src/c4/optimal.o                      ../../src/c4/viterbi.o                      ../../src/c4/layout.o                       ../../src/c4/codegen.o                      ../../src/c4/cgutil.o                       ../../src/c4/alignment.o                    ../../src/c4/region.o                       ../../src/c4/c4.o                           ../../src/c4/subopt.o                       ../../src/comparison/match.o                     ../../src/sequence/codonsubmat.o                 ../../src/sequence/submat.o                      ../../src/struct/sparsecache.o                 ../../src/struct/matrix.o                      ../../src/sequence/sequence.o                  ../../src/sequence/alphabet.o                  ../../src/sequence/splice.o                    ../../src/sequence/translate.o                 ../../src/general/argument.o                   ../../src/general/lineparse.o                  ../../src/general/threadref.o                  -lm -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/model'
Making all in hub
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/hub'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/comparison            -I../../src/struct                -I../../src/c4                    -I../../src/bsdp                  -I../../src/sdp                   -I../../src/model                 -I../../src/general               -DHOSTTYPE="\"riscv64-koji-linux-gnu\""                   -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c gam.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/comparison            -I../../src/struct                -I../../src/c4                    -I../../src/bsdp                  -I../../src/sdp                   -I../../src/model                 -I../../src/general               -DHOSTTYPE="\"riscv64-koji-linux-gnu\""                   -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c gam.c
BUILDSTDERR: gam.c: In function 'GAM_Refinement_from_string':
BUILDSTDERR: gam.c:68:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          if(!g_strcasecmp(name[i], str))
BUILDSTDERR:          ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from gam.h:23,
BUILDSTDERR:                  from gam.c:21:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: gam.c: In function 'GAM_bestn_tree_destroy':
BUILDSTDERR: gam.c:526:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_tree_traverse(bestn_tree, GAM_tree_collect_values,
BUILDSTDERR:      ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:88,
BUILDSTDERR:                  from gam.h:23,
BUILDSTDERR:                  from gam.c:21:
BUILDSTDERR: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here
BUILDSTDERR:  void     g_tree_traverse        (GTree            *tree,
BUILDSTDERR:           ^~~~~~~~~~~~~~~
BUILDSTDERR: gam.c: In function 'GAM_percent_threshold_tree_destroy':
BUILDSTDERR: gam.c:539:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      g_tree_traverse(percent_threshold_tree, GAM_tree_collect_values,
BUILDSTDERR:      ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:88,
BUILDSTDERR:                  from gam.h:23,
BUILDSTDERR:                  from gam.c:21:
BUILDSTDERR: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here
BUILDSTDERR:  void     g_tree_traverse        (GTree            *tree,
BUILDSTDERR:           ^~~~~~~~~~~~~~~
BUILDSTDERR: gam.c: In function 'GAM_report':
BUILDSTDERR: gam.c:589:9: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          g_tree_traverse(gam->bestn_tree, GAM_bestn_tree_report_traverse,
BUILDSTDERR:          ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:88,
BUILDSTDERR:                  from gam.h:23,
BUILDSTDERR:                  from gam.c:21:
BUILDSTDERR: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here
BUILDSTDERR:  void     g_tree_traverse        (GTree            *tree,
BUILDSTDERR:           ^~~~~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o gam.test  gam.test.o gam.o ../../src/comparison/hspset.o                      ../../src/comparison/comparison.o                  ../../src/comparison/wordhood.o                    ../../src/struct/sparsecache.o                     ../../src/general/compoundfile.o                   ../../src/general/threadref.o                      ../../src/c4/c4.o                             ../../src/c4/codegen.o                        ../../src/c4/cgutil.o                         ../../src/c4/opair.o                          ../../src/c4/alignment.o                      ../../src/c4/optimal.o                        ../../src/c4/viterbi.o                        ../../src/c4/layout.o                         ../../src/c4/region.o                         ../../src/c4/subopt.o                         ../../src/bsdp/bsdp.o                         ../../src/bsdp/sar.o                          ../../src/bsdp/heuristic.o                    ../../src/bsdp/hpair.o                        ../../src/sdp/boundary.o                      ../../src/sdp/sdp.o                           ../../src/sdp/scheduler.o                     ../../src/sdp/straceback.o                    ../../src/sdp/lookahead.o                     ../../src/struct/matrix.o                     ../../src/struct/slist.o                      ../../src/struct/pqueue.o                     ../../src/struct/recyclebin.o                 ../../src/struct/rangetree.o                  ../../src/sequence/sequence.o                 ../../src/sequence/alphabet.o                 ../../src/sequence/translate.o                ../../src/sequence/splice.o                   ../../src/model/affine.o                      ../../src/model/est2genome.o                  ../../src/model/ner.o                         ../../src/model/protein2dna.o                 ../../src/model/protein2genome.o              ../../src/model/coding2coding.o               ../../src/model/coding2genome.o               ../../src/model/cdna2genome.o                 ../../src/model/genome2genome.o               ../../src/model/ungapped.o                    ../../src/model/intron.o                      ../../src/model/frameshift.o                  ../../src/model/phase.o                       ../../src/model/modeltype.o                   ../../src/general/argument.o                  ../../src/general/lineparse.o                 ../../src/general/jobqueue.o                  ../../src/comparison/match.o                  ../../src/sequence/submat.o                   ../../src/sequence/codonsubmat.o              -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/comparison            -I../../src/struct                -I../../src/c4                    -I../../src/bsdp                  -I../../src/sdp                   -I../../src/model                 -I../../src/general               -DHOSTTYPE="\"riscv64-koji-linux-gnu\""                   -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c analysis.test.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/comparison            -I../../src/struct                -I../../src/c4                    -I../../src/bsdp                  -I../../src/sdp                   -I../../src/model                 -I../../src/general               -DHOSTTYPE="\"riscv64-koji-linux-gnu\""                   -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c analysis.c
BUILDSTDERR: analysis.c: In function 'Analysis_decide_scan_query':
BUILDSTDERR: analysis.c:329:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      if(!g_strcasecmp(force_scan, "none")){
BUILDSTDERR:      ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from analysis.h:23,
BUILDSTDERR:                  from analysis.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: analysis.c:336:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      } else if((!g_strcasecmp(force_scan, "query"))
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from analysis.h:23,
BUILDSTDERR:                  from analysis.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: analysis.c:337:12: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:             || (!g_strcasecmp(force_scan, "q"))){
BUILDSTDERR:             ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from analysis.h:23,
BUILDSTDERR:                  from analysis.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: analysis.c:339:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      } else if((!g_strcasecmp(force_scan, "target"))
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from analysis.h:23,
BUILDSTDERR:                  from analysis.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: analysis.c:340:12: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:             || (!g_strcasecmp(force_scan, "t"))){
BUILDSTDERR:             ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from analysis.h:23,
BUILDSTDERR:                  from analysis.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: analysis.c: In function 'Analysis_Client_get_Sequence':
BUILDSTDERR: analysis.c:781:24: warning: variable 'checksum' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register gint len, checksum;
BUILDSTDERR:                         ^~~~~~~~
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/comparison            -I../../src/struct                -I../../src/c4                    -I../../src/bsdp                  -I../../src/sdp                   -I../../src/model                 -I../../src/general               -DHOSTTYPE="\"riscv64-koji-linux-gnu\""                   -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c bsam.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o analysis.test  analysis.test.o analysis.o gam.o bsam.o ../../src/comparison/hspset.o                           ../../src/comparison/wordhood.o                         ../../src/comparison/seeder.o                           ../../src/comparison/comparison.o                       ../../src/database/fastapipe.o                          ../../src/database/fastadb.o                            ../../src/struct/dejavu.o                               ../../src/struct/fsm.o                                  ../../src/struct/vfsm.o                                 ../../src/struct/sparsecache.o                          ../../src/general/compoundfile.o                        ../../src/general/socket.o                              ../../src/general/threadref.o                            ../../src/c4/c4.o                             ../../src/c4/codegen.o                        ../../src/c4/cgutil.o                         ../../src/c4/opair.o                          ../../src/c4/alignment.o                      ../../src/c4/optimal.o                        ../../src/c4/viterbi.o                        ../../src/c4/layout.o                         ../../src/c4/region.o                         ../../src/c4/subopt.o                         ../../src/bsdp/bsdp.o                         ../../src/bsdp/sar.o                          ../../src/bsdp/heuristic.o                    ../../src/bsdp/hpair.o                        ../../src/sdp/boundary.o                      ../../src/sdp/sdp.o                           ../../src/sdp/scheduler.o                     ../../src/sdp/straceback.o                    ../../src/sdp/lookahead.o                     ../../src/struct/matrix.o                     ../../src/struct/slist.o                      ../../src/struct/pqueue.o                     ../../src/struct/recyclebin.o                 ../../src/struct/rangetree.o                  ../../src/sequence/sequence.o                 ../../src/sequence/alphabet.o                 ../../src/sequence/translate.o                ../../src/sequence/splice.o                   ../../src/model/affine.o                      ../../src/model/est2genome.o                  ../../src/model/ner.o                         ../../src/model/protein2dna.o                 ../../src/model/protein2genome.o              ../../src/model/coding2coding.o               ../../src/model/coding2genome.o               ../../src/model/cdna2genome.o                 ../../src/model/genome2genome.o               ../../src/model/ungapped.o                    ../../src/model/intron.o                      ../../src/model/frameshift.o                  ../../src/model/phase.o                       ../../src/model/modeltype.o                   ../../src/general/argument.o                  ../../src/general/lineparse.o                 ../../src/general/jobqueue.o                  ../../src/comparison/match.o                  ../../src/sequence/submat.o                   ../../src/sequence/codonsubmat.o              -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/comparison            -I../../src/struct                -I../../src/c4                    -I../../src/bsdp                  -I../../src/sdp                   -I../../src/model                 -I../../src/general               -DHOSTTYPE="\"riscv64-koji-linux-gnu\""                   -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c bsam.test.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o bsam.test  bsam.test.o bsam.o ../../src/general/argument.o                         ../../src/general/lineparse.o                        ../../src/general/threadref.o                        ../../src/comparison/hspset.o                        ../../src/comparison/comparison.o                    ../../src/comparison/match.o                         ../../src/comparison/wordhood.o                      ../../src/sequence/sequence.o                        ../../src/sequence/alphabet.o                        ../../src/sequence/translate.o                       ../../src/sequence/submat.o                          ../../src/sequence/codonsubmat.o                     ../../src/sequence/splice.o                          ../../src/struct/dejavu.o                            ../../src/struct/pqueue.o                            ../../src/struct/sparsecache.o                       ../../src/struct/recyclebin.o                        ../../src/struct/matrix.o                            -lm -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/hub'
Making all in program
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/program'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/comparison            -I../../src/struct                -I../../src/c4                    -I../../src/bsdp                  -I../../src/sdp                   -I../../src/model                 -I../../src/hub                   -I../../src/general               -DHOSTTYPE="\"riscv64-koji-linux-gnu\""                   -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c exonerate.c
../../src/model/bootstrapper --compiled no
BUILDSTDERR: ** (process:27655): WARNING **: 18:39:24.593: Compiled with assertion checking - will run slowly
BUILDSTDERR: ** Message: 18:39:24.672: Starting building bootstrapping components
BUILDSTDERR: ** Message: 18:39:24.716: Processing model [est2genome]
BUILDSTDERR: ** Message: 18:39:24.813: Bootstrapper processing model [est2genome]
BUILDSTDERR: ** Message: 18:39:24.814: Process optimal [optimal:est2genome]
BUILDSTDERR: ** (process:27655): WARNING **: 18:39:24.817: Creating codegen directory [/builddir/build/BUILD/exonerate-2.4.0/codegen]
BUILDSTDERR: ** (process:27655): WARNING **: 18:39:24.821: Creating codegen directory [/builddir/build/BUILD/exonerate-2.4.0/codegen]
BUILDSTDERR: ** (process:27655): WARNING **: 18:39:24.826: Creating codegen directory [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu]
BUILDSTDERR: ** (process:27655): WARNING **: 18:39:24.828: Creating codegen directory [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu]
BUILDSTDERR: ** Message: 18:39:24.905: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.c
BUILDSTDERR: ** Message: 18:40:11.244: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.c
BUILDSTDERR: ** Message: 18:41:10.077: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.c
BUILDSTDERR: ** Message: 18:42:04.918: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.c
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.c: In function 'optimal_58_est2genome_32_find_32_checkpoint':
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.c:35:29: warning: variable 'transition' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register C4_Transition *transition;
BUILDSTDERR:                              ^~~~~~~~~~
BUILDSTDERR: ** Message: 18:44:17.338: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.c
BUILDSTDERR: ** Message: 18:47:23.079: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o]
ar -cSq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o
BUILDSTDERR: ** Message: 18:47:23.092: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 18:47:23.609: Adding function [optimal_58_est2genome_32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o
BUILDSTDERR: ** Message: 18:47:23.629: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o]
BUILDSTDERR: ** Message: 18:47:23.630: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 18:47:24.409: Adding function [optimal_58_est2genome_32_find_32_path]
BUILDSTDERR: ** Message: 18:47:24.415: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o
BUILDSTDERR: ** Message: 18:47:24.443: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o] to archive
BUILDSTDERR: ** Message: 18:47:25.227: Adding function [optimal_58_est2genome_32_find_32_region]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o
BUILDSTDERR: ** Message: 18:47:25.241: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o]
BUILDSTDERR: ** Message: 18:47:25.242: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o] to archive
BUILDSTDERR: ** Message: 18:47:26.266: Adding function [optimal_58_est2genome_32_find_32_checkpoint]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o
BUILDSTDERR: ** Message: 18:47:26.280: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o]
BUILDSTDERR: ** Message: 18:47:26.281: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o] to archive
BUILDSTDERR: ** Message: 18:47:28.529: Adding function [optimal_58_est2genome_32_find_32_path_32_continuation]
BUILDSTDERR: ** Message: 18:47:29.229: Process optimal [Terminal [Segment("START"->"match reverse"):[est2genome]]]
BUILDSTDERR: ** Message: 18:47:29.433: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 18:48:40.762: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 18:50:15.345: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 18:50:15.361: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 18:50:16.880: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score]
BUILDSTDERR: ** Message: 18:50:16.894: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 18:50:16.896: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 18:50:18.752: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 18:50:18.773: Process optimal [Terminal [Segment("match reverse"->"END"):[est2genome]]]
BUILDSTDERR: ** Message: 18:50:18.866: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 18:51:00.429: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 18:51:52.217: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 18:51:52.233: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 18:51:53.481: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 18:51:53.503: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 18:51:53.505: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 18:51:54.769: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 18:51:54.772: Process optimal [Terminal [Segment("START"->"match forward"):[est2genome]]]
BUILDSTDERR: ** Message: 18:51:54.877: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 18:52:56.049: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 18:54:26.766: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 18:54:26.801: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 18:54:28.701: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 18:54:28.711: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 18:54:28.716: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 18:54:30.259: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 18:54:30.269: Process optimal [Terminal [Segment("match forward"->"END"):[est2genome]]]
BUILDSTDERR: ** Message: 18:54:30.344: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 18:55:12.083: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.c
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 18:56:05.594: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o]
BUILDSTDERR: ** Message: 18:56:05.597: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 18:56:07.700: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 18:56:07.711: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 18:56:07.717: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 18:56:09.805: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 18:56:09.809: Process optimal [HeuristicJoin:[Segment("match reverse"->"match reverse"):[est2genome]]]
BUILDSTDERR: ** Message: 18:56:09.988: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 18:58:10.628: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 19:01:08.871: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 19:01:08.884: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 19:01:12.605: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score]
BUILDSTDERR: ** Message: 19:01:12.608: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 19:01:12.609: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 19:01:15.664: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 19:01:15.675: Process optimal [Src span [Segment("match reverse"->"intron reverse"):[est2genome]]]
BUILDSTDERR: ** Message: 19:01:15.786: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 19:02:02.293: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 19:03:03.173: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o]
BUILDSTDERR: ** Message: 19:03:03.176: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 19:03:06.126: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score]
BUILDSTDERR: ** Message: 19:03:06.129: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 19:03:06.129: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 19:03:09.365: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 19:03:09.368: Process optimal [Src span traceback [Segment("match reverse"->"intron reverse"):[est2genome]]]
BUILDSTDERR: ** Message: 19:03:09.600: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 19:05:38.689: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 19:05:38.698: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 19:05:42.890: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 19:05:42.893: Process optimal [Dst span [Segment("intron reverse"->"match reverse"):[est2genome]]]
BUILDSTDERR: ** Message: 19:05:43.124: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 19:06:53.424: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 19:08:29.765: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o]
BUILDSTDERR: ** Message: 19:08:29.768: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 19:08:33.642: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score]
BUILDSTDERR: ** Message: 19:08:33.644: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 19:08:33.645: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 19:08:37.495: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 19:08:37.504: Process optimal [HeuristicJoin:[Segment("match forward"->"match forward"):[est2genome]]]
BUILDSTDERR: ** Message: 19:08:37.725: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 19:10:50.076: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 19:14:04.873: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 19:14:04.886: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 19:14:10.393: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 19:14:10.409: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 19:14:10.411: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 19:14:15.525: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 19:14:15.536: Process optimal [Src span [Segment("match forward"->"intron forward"):[est2genome]]]
BUILDSTDERR: ** Message: 19:14:15.613: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 19:15:05.001: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 19:16:10.360: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 19:16:10.391: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 19:16:14.056: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score]
BUILDSTDERR: ** Message: 19:16:14.058: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 19:16:14.059: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 19:16:18.925: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 19:16:18.938: Process optimal [Src span traceback [Segment("match forward"->"intron forward"):[est2genome]]]
BUILDSTDERR: ** Message: 19:16:19.356: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 19:18:58.680: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 19:18:58.713: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 19:19:03.737: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 19:19:03.753: Process optimal [Dst span [Segment("intron forward"->"match forward"):[est2genome]]]
BUILDSTDERR: ** Message: 19:19:03.881: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 19:20:17.230: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 19:22:07.792: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o]
BUILDSTDERR: ** Message: 19:22:07.799: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 19:22:12.017: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 19:22:12.020: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 19:22:12.021: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 19:22:16.343: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 19:22:16.494: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.c
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.c: In function 'Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary':
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.c:31:25: warning: unused variable 'shadow' [-Wunused-variable]
BUILDSTDERR:      register C4_Shadow *shadow;
BUILDSTDERR:                          ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.c:30:34: warning: unused variable 'span_data' [-Wunused-variable]
BUILDSTDERR:      register Scheduler_SpanData *span_data;
BUILDSTDERR:                                   ^~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.c:29:24: warning: unused variable 'span_seed' [-Wunused-variable]
BUILDSTDERR:      Scheduler_SpanSeed span_seed;
BUILDSTDERR:                         ^~~~~~~~~
BUILDSTDERR: ** Message: 19:22:45.126: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.c
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o
BUILDSTDERR: ** Message: 19:23:11.846: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o]
BUILDSTDERR: ** Message: 19:23:11.849: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o] to archive
BUILDSTDERR: ** Message: 19:23:16.058: Adding function [Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o
BUILDSTDERR: ** Message: 19:23:16.062: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o]
BUILDSTDERR: ** Message: 19:23:16.069: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o] to archive
BUILDSTDERR: ** Message: 19:23:20.392: Adding function [Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary]
BUILDSTDERR: ** Message: 19:23:20.409: Processing model [protein2genome]
BUILDSTDERR: ** Message: 19:23:20.452: Bootstrapper processing model [protein2genome:local]
BUILDSTDERR: ** Message: 19:23:20.468: Process optimal [optimal:protein2genome:local]
BUILDSTDERR: ** Message: 19:23:20.572: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.c
BUILDSTDERR: ** Message: 19:24:19.058: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.c
BUILDSTDERR: ** Message: 19:25:46.181: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.c
BUILDSTDERR: ** Message: 19:27:06.018: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.c
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.c: In function 'optimal_58_protein2genome_58_local_32_find_32_checkpoint':
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.c:35:29: warning: variable 'transition' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register C4_Transition *transition;
BUILDSTDERR:                              ^~~~~~~~~~
BUILDSTDERR: ** Message: 19:30:34.919: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.c
BUILDSTDERR: ** Message: 19:35:23.595: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o]
BUILDSTDERR: ** Message: 19:35:23.597: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o
BUILDSTDERR: ** Message: 19:35:29.248: Adding function [optimal_58_protein2genome_58_local_32_find_32_score]
BUILDSTDERR: ** Message: 19:35:29.263: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o]
BUILDSTDERR: ** Message: 19:35:29.265: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o
BUILDSTDERR: ** Message: 19:35:35.502: Adding function [optimal_58_protein2genome_58_local_32_find_32_path]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o
BUILDSTDERR: ** Message: 19:35:35.524: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o]
BUILDSTDERR: ** Message: 19:35:35.525: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o] to archive
BUILDSTDERR: ** Message: 19:35:43.461: Adding function [optimal_58_protein2genome_58_local_32_find_32_region]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o
BUILDSTDERR: ** Message: 19:35:43.483: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o]
BUILDSTDERR: ** Message: 19:35:43.494: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o] to archive
BUILDSTDERR: ** Message: 19:35:51.015: Adding function [optimal_58_protein2genome_58_local_32_find_32_checkpoint]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o
BUILDSTDERR: ** Message: 19:35:51.018: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o]
BUILDSTDERR: ** Message: 19:35:51.021: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o] to archive
BUILDSTDERR: ** Message: 19:35:58.209: Adding function [optimal_58_protein2genome_58_local_32_find_32_path_32_continuation]
BUILDSTDERR: ** Message: 19:35:59.766: Process optimal [Terminal [Segment("START"->"match"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 19:36:00.253: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 19:39:47.493: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 19:45:21.979: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 19:45:21.981: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 19:45:29.129: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 19:45:29.133: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 19:45:29.137: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 19:45:35.889: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 19:45:35.900: Process optimal [Terminal [Segment("match"->"END"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 19:45:36.055: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 19:47:30.033: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 19:50:25.133: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 19:50:25.148: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 19:50:31.885: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 19:50:31.895: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 19:50:31.896: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 19:50:38.540: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 19:50:38.552: Process optimal [HeuristicJoin:[Segment("match"->"match"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 19:50:38.957: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 19:58:00.808: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 20:11:21.080: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 20:11:21.093: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 20:11:31.738: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 20:11:31.761: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 20:11:31.768: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 20:11:44.480: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 20:11:44.500: Process optimal [Src span [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 20:11:44.761: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 20:13:49.316: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 20:16:47.301: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o]
BUILDSTDERR: ** Message: 20:16:47.316: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 20:16:56.689: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score]
BUILDSTDERR: ** Message: 20:16:56.707: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 20:16:56.717: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 20:17:09.324: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 20:17:09.326: Process optimal [Src span traceback [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 20:17:09.825: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 20:28:44.894: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 20:28:44.955: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 20:28:57.230: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 20:28:57.242: Process optimal [Dst span [Segment("intron 0:0 phase-T"->"match"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 20:28:57.545: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 20:33:18.698: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 20:42:26.713: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 20:42:26.717: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 20:42:41.729: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 20:42:41.738: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 20:42:41.746: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 20:42:57.033: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 20:42:57.036: Process optimal [Src span [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 20:42:57.470: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 20:46:23.925: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 20:51:37.320: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o]
BUILDSTDERR: ** Message: 20:51:37.355: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 20:51:56.894: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 20:51:56.897: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 20:51:56.901: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 20:52:19.520: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 20:52:19.524: Process optimal [Src span traceback [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 20:52:20.289: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 21:11:03.611: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 21:11:03.620: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 21:11:22.652: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 21:11:22.664: Process optimal [Dst span [Segment("intron 1:2 phase-T"->"match"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 21:11:23.360: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 21:17:24.723: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 21:26:07.714: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 21:26:07.725: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 21:26:20.424: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 21:26:20.440: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 21:26:20.445: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 21:26:32.113: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 21:26:32.121: Process optimal [Src span [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 21:26:32.309: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 21:28:32.689: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 21:33:25.215: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 21:33:25.232: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 21:33:42.861: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score]
BUILDSTDERR: ** Message: 21:33:42.864: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 21:33:42.876: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 21:34:02.601: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 21:34:02.627: Process optimal [Src span traceback [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 21:34:03.302: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 21:49:12.556: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 21:49:12.571: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 21:49:33.709: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 21:49:33.721: Process optimal [Dst span [Segment("intron 2:1 phase-T"->"match"):[protein2genome:local]]]
BUILDSTDERR: ** Message: 21:49:34.288: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c
BUILDSTDERR: ** Message: 21:55:21.979: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c
BUILDSTDERR: ** Message: 22:04:45.726: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o
BUILDSTDERR: ** Message: 22:04:45.732: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 22:05:11.094: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o
BUILDSTDERR: ** Message: 22:05:11.098: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o]
BUILDSTDERR: ** Message: 22:05:11.112: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 22:05:34.068: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path]
BUILDSTDERR: ** Message: 22:05:34.180: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.c
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.c: In function 'Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary':
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.c:30:25: warning: unused variable 'shadow' [-Wunused-variable]
BUILDSTDERR:      register C4_Shadow *shadow;
BUILDSTDERR:                          ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.c:29:34: warning: unused variable 'span_data' [-Wunused-variable]
BUILDSTDERR:      register Scheduler_SpanData *span_data;
BUILDSTDERR:                                   ^~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.c:28:24: warning: unused variable 'span_seed' [-Wunused-variable]
BUILDSTDERR:      Scheduler_SpanSeed span_seed;
BUILDSTDERR:                         ^~~~~~~~~
BUILDSTDERR: ** Message: 22:06:11.128: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.c
BUILDSTDERR: ** Message: 22:07:08.204: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o]
BUILDSTDERR: ** Message: 22:07:08.218: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o
BUILDSTDERR: ** Message: 22:07:39.096: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o
BUILDSTDERR: ** Message: 22:07:39.116: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o]
BUILDSTDERR: ** Message: 22:07:39.118: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o] to archive
BUILDSTDERR: ** Message: 22:08:01.078: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary]
BUILDSTDERR: ** Message: 22:08:01.198: Processing model [cdna2genome]
BUILDSTDERR: ** Message: 22:08:01.441: Bootstrapper processing model [cdna2genome]
BUILDSTDERR: ** Message: 22:08:01.442: Process optimal [optimal:cdna2genome]
BUILDSTDERR: ** Message: 22:08:02.238: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.c
BUILDSTDERR: ** Message: 22:19:15.390: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.c
BUILDSTDERR: ** Message: 22:36:23.817: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.c
BUILDSTDERR: ** Message: 22:53:44.465: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.c
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.c: In function 'optimal_58_cdna2genome_32_find_32_checkpoint':
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.c:35:29: warning: variable 'transition' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register C4_Transition *transition;
BUILDSTDERR:                              ^~~~~~~~~~
BUILDSTDERR: ** Message: 23:47:45.377: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.c
BUILDSTDERR: ** Message: 01:03:43.824: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o]
BUILDSTDERR: ** Message: 01:03:43.930: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o
BUILDSTDERR: ** Message: 01:04:02.218: Adding function [optimal_58_cdna2genome_32_find_32_score]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o
BUILDSTDERR: ** Message: 01:04:02.229: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o]
BUILDSTDERR: ** Message: 01:04:02.231: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 01:04:20.616: Adding function [optimal_58_cdna2genome_32_find_32_path]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o
BUILDSTDERR: ** Message: 01:04:20.637: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o]
BUILDSTDERR: ** Message: 01:04:20.641: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o
BUILDSTDERR: ** Message: 01:04:47.204: Adding function [optimal_58_cdna2genome_32_find_32_region]
BUILDSTDERR: ** Message: 01:04:47.207: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o]
BUILDSTDERR: ** Message: 01:04:47.208: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o
BUILDSTDERR: ** Message: 01:05:11.800: Adding function [optimal_58_cdna2genome_32_find_32_checkpoint]
BUILDSTDERR: ** Message: 01:05:11.803: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o]
BUILDSTDERR: ** Message: 01:05:11.807: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] to archive
BUILDSTDERR: ** Message: 01:05:41.818: Adding function [optimal_58_cdna2genome_32_find_32_path_32_continuation]
BUILDSTDERR: ** Message: 01:05:41.952: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.c
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.c: In function 'Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary':
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.c:30:25: warning: unused variable 'shadow' [-Wunused-variable]
BUILDSTDERR:      register C4_Shadow *shadow;
BUILDSTDERR:                          ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.c:29:34: warning: unused variable 'span_data' [-Wunused-variable]
BUILDSTDERR:      register Scheduler_SpanData *span_data;
BUILDSTDERR:                                   ^~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.c:28:24: warning: unused variable 'span_seed' [-Wunused-variable]
BUILDSTDERR:      Scheduler_SpanSeed span_seed;
BUILDSTDERR:                         ^~~~~~~~~
BUILDSTDERR: ** Message: 01:06:36.105: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.c
BUILDSTDERR: ** Message: 01:07:41.110: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o
BUILDSTDERR: ** Message: 01:07:41.124: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] to archive
BUILDSTDERR: ** Message: 01:08:10.836: Adding function [Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o
BUILDSTDERR: ** Message: 01:08:10.845: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o]
BUILDSTDERR: ** Message: 01:08:10.847: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] to archive
BUILDSTDERR: ** Message: 01:08:33.878: Adding function [Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary]
BUILDSTDERR: ** Message: 01:08:34.004: Processing model [coding2genome]
BUILDSTDERR: ** Message: 01:08:34.077: Bootstrapper processing model [coding2genome]
BUILDSTDERR: ** Message: 01:08:34.079: Process optimal [optimal:coding2genome]
BUILDSTDERR: ** Message: 01:08:34.397: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.c
BUILDSTDERR: ** Message: 01:11:40.500: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.c
BUILDSTDERR: ** Message: 01:16:26.679: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.c
BUILDSTDERR: ** Message: 01:20:33.552: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.c
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.c: In function 'optimal_58_coding2genome_32_find_32_checkpoint':
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.c:35:29: warning: variable 'transition' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register C4_Transition *transition;
BUILDSTDERR:                              ^~~~~~~~~~
BUILDSTDERR: ** Message: 01:33:47.091: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.c
BUILDSTDERR: ** Message: 01:53:50.498: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o
BUILDSTDERR: ** Message: 01:53:50.508: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o] to archive
BUILDSTDERR: ** Message: 01:54:20.161: Adding function [optimal_58_coding2genome_32_find_32_score]
BUILDSTDERR: ** Message: 01:54:20.164: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o
BUILDSTDERR: ** Message: 01:54:20.170: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o] to archive
BUILDSTDERR: ** Message: 01:54:43.509: Adding function [optimal_58_coding2genome_32_find_32_path]
BUILDSTDERR: ** Message: 01:54:43.516: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o]
BUILDSTDERR: ** Message: 01:54:43.518: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o] to archive
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o
BUILDSTDERR: ** Message: 01:55:07.754: Adding function [optimal_58_coding2genome_32_find_32_region]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o
BUILDSTDERR: ** Message: 01:55:07.773: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o]
BUILDSTDERR: ** Message: 01:55:07.776: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o] to archive
BUILDSTDERR: ** Message: 01:55:30.546: Adding function [optimal_58_coding2genome_32_find_32_checkpoint]
BUILDSTDERR: ** Message: 01:55:30.557: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o
BUILDSTDERR: ** Message: 01:55:30.572: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o] to archive
BUILDSTDERR: ** Message: 01:55:55.064: Adding function [optimal_58_coding2genome_32_find_32_path_32_continuation]
BUILDSTDERR: ** Message: 01:55:55.134: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.c
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.c: In function 'Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary':
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.c:30:25: warning: unused variable 'shadow' [-Wunused-variable]
BUILDSTDERR:      register C4_Shadow *shadow;
BUILDSTDERR:                          ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.c:29:34: warning: unused variable 'span_data' [-Wunused-variable]
BUILDSTDERR:      register Scheduler_SpanData *span_data;
BUILDSTDERR:                                   ^~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.c:28:24: warning: unused variable 'span_seed' [-Wunused-variable]
BUILDSTDERR:      Scheduler_SpanSeed span_seed;
BUILDSTDERR:                         ^~~~~~~~~
BUILDSTDERR: ** Message: 01:56:31.621: Compiling codegen:
BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include   -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/model -I/builddir/build/BUILD/exonerate-2.4.0/src/comparison -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/bsdp -I/builddir/build/BUILD/exonerate-2.4.0/src/sdp -o /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o -c /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.c
BUILDSTDERR: ** Message: 01:57:18.980: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o
BUILDSTDERR: ** Message: 01:57:18.993: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] to archive
BUILDSTDERR: ** Message: 01:57:46.006: Adding function [Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary]
ar -Sq c4_model_archive.a /builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o
BUILDSTDERR: ** Message: 01:57:46.022: Adding: [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o]
BUILDSTDERR: ** Message: 01:57:46.024: Adding object file [/builddir/build/BUILD/exonerate-2.4.0/codegen/riscv64_45_koji_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] to archive
BUILDSTDERR: ** Message: 01:58:22.868: Adding function [Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary]
BUILDSTDERR: ** Message: 01:58:22.902: Compiling with: [gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I/builddir/build/BUILD/exonerate-2.4.0/src/c4 -I/builddir/build/BUILD/exonerate-2.4.0/src/sequence -I/builddir/build/BUILD/exonerate-2.4.0/src/general -I/builddir/build/BUILD/exonerate-2.4.0/src/struct -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -o c4_model_lookup.o -c c4_model_lookup.c]
BUILDSTDERR: ** Message: 01:58:40.700: Adding: [c4_model_lookup.o]
ar -Sq c4_model_archive.a c4_model_lookup.o
BUILDSTDERR: ** Message: 01:58:40.713: Adding object file [c4_model_lookup.o] to archive
BUILDSTDERR: ** Message: 01:59:07.264: Indexing archive [c4_model_archive.a]
ranlib c4_model_archive.a
BUILDSTDERR: ** Message: 01:59:40.917: Done
BUILDSTDERR: ** Message: 01:59:40.939: Finished building bootstrapping components
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I../../src/sequence              -I../../src/database              -I../../src/comparison            -I../../src/struct                -I../../src/c4                    -I../../src/bsdp                  -I../../src/sdp                   -I../../src/model                 -I../../src/hub                   -I../../src/general               -DHOSTTYPE="\"riscv64-koji-linux-gnu\""                   -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I.   \
        -DUSE_COMPILED_MODELS             \
        -c ../../src/c4/viterbi.c
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -I../../src/sequence              -I../../src/database              -I../../src/comparison            -I../../src/struct                -I../../src/c4                    -I../../src/bsdp                  -I../../src/sdp                   -I../../src/model                 -I../../src/hub                   -I../../src/general               -DHOSTTYPE="\"riscv64-koji-linux-gnu\""                   -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I.   \
        -DUSE_COMPILED_MODELS             \
        -c ../../src/sdp/scheduler.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o exonerate  exonerate.o viterbi.o scheduler.o c4_model_archive.a                                            ../../src/comparison/wordhood.o                          ../../src/comparison/hspset.o                            ../../src/comparison/seeder.o                            ../../src/comparison/comparison.o                        ../../src/database/fastapipe.o                           ../../src/database/fastadb.o                             ../../src/struct/dejavu.o                                ../../src/struct/fsm.o                                   ../../src/struct/vfsm.o                                  ../../src/struct/sparsecache.o                           ../../src/hub/gam.o                                      ../../src/hub/bsam.o                                     ../../src/hub/analysis.o                                 ../../src/general/compoundfile.o                         ../../src/general/threadref.o                            ../../src/c4/c4.o                             ../../src/c4/codegen.o                        ../../src/c4/cgutil.o                         ../../src/c4/opair.o                          ../../src/c4/alignment.o                      ../../src/c4/optimal.o                        ../../src/c4/layout.o                         ../../src/c4/region.o                         ../../src/c4/subopt.o                         ../../src/bsdp/bsdp.o                         ../../src/bsdp/sar.o                          ../../src/bsdp/heuristic.o                    ../../src/bsdp/hpair.o                        ../../src/sdp/boundary.o                      ../../src/sdp/sdp.o                           ../../src/sdp/lookahead.o                     ../../src/sdp/straceback.o                    ../../src/struct/matrix.o                     ../../src/struct/slist.o                      ../../src/struct/pqueue.o                     ../../src/struct/recyclebin.o                 ../../src/struct/rangetree.o                  ../../src/sequence/sequence.o                 ../../src/sequence/alphabet.o                 ../../src/sequence/translate.o                ../../src/sequence/splice.o                   ../../src/model/affine.o                      ../../src/model/est2genome.o                  ../../src/model/ner.o                         ../../src/model/protein2dna.o                 ../../src/model/protein2genome.o              ../../src/model/coding2coding.o               ../../src/model/coding2genome.o               ../../src/model/cdna2genome.o                 ../../src/model/genome2genome.o               ../../src/model/ungapped.o                    ../../src/model/intron.o                      ../../src/model/frameshift.o                  ../../src/model/phase.o                       ../../src/model/modeltype.o                   ../../src/general/argument.o                  ../../src/general/lineparse.o                 ../../src/general/socket.o                    ../../src/general/jobqueue.o                  ../../src/comparison/match.o                  ../../src/sequence/submat.o                   ../../src/sequence/codonsubmat.o -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/comparison            -I../../src/struct                -I../../src/c4                    -I../../src/bsdp                  -I../../src/sdp                   -I../../src/model                 -I../../src/hub                   -I../../src/general               -DHOSTTYPE="\"riscv64-koji-linux-gnu\""                   -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c ipcress.c
BUILDSTDERR: ipcress.c: In function 'Ipcress_prepare_PCR':
BUILDSTDERR: ipcress.c:264:9: warning: 'g_strup' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          g_strup(primer_a);
BUILDSTDERR:          ^~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ipcress.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:210:23: note: declared here
BUILDSTDERR:  gchar*                g_strup          (gchar       *string);
BUILDSTDERR:                        ^~~~~~~
BUILDSTDERR: ipcress.c:265:9: warning: 'g_strup' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:          g_strup(primer_b);
BUILDSTDERR:          ^~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ipcress.c:16:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:210:23: note: declared here
BUILDSTDERR:  gchar*                g_strup          (gchar       *string);
BUILDSTDERR:                        ^~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o ipcress  ipcress.o ../../src/comparison/pcr.o                       ../../src/comparison/wordhood.o                  ../../src/database/fastadb.o                     ../../src/sequence/alphabet.o                    ../../src/sequence/sequence.o                    ../../src/sequence/splice.o                      ../../src/sequence/translate.o                   ../../src/sequence/submat.o                      ../../src/sequence/codonsubmat.o                 ../../src/struct/fsm.o                           ../../src/struct/slist.o                         ../../src/struct/matrix.o                        ../../src/struct/recyclebin.o                    ../../src/struct/sparsecache.o                   ../../src/general/lineparse.o                    ../../src/general/argument.o                     ../../src/general/compoundfile.o                 -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/comparison            -I../../src/struct                -I../../src/c4                    -I../../src/bsdp                  -I../../src/sdp                   -I../../src/model                 -I../../src/hub                   -I../../src/general               -DHOSTTYPE="\"riscv64-koji-linux-gnu\""                   -DSOURCE_ROOT_DIR="\"/builddir/build/BUILD/exonerate-2.4.0\""            -DCUSTOM_GUINT64_FORMAT="\"llu\""    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c exonerate-server.c
BUILDSTDERR: exonerate-server.c: In function 'Exonerate_Server_get_seq':
BUILDSTDERR: exonerate-server.c:269:32: warning: variable 'ds' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      register Dataset_Sequence *ds;
BUILDSTDERR:                                 ^~
BUILDSTDERR: exonerate-server.c: In function 'Exonerate_Server_process':
BUILDSTDERR: exonerate-server.c:655:24: warning: comparison of constant '10' with boolean expression is always false [-Wbool-compare]
BUILDSTDERR:      if(!msg[msg_len-1] == '\n')
BUILDSTDERR:                         ^~
BUILDSTDERR: exonerate-server.c:655:24: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses]
BUILDSTDERR: exonerate-server.c:655:8: note: add parentheses around left hand side expression to silence this warning
BUILDSTDERR:      if(!msg[msg_len-1] == '\n')
BUILDSTDERR:         ^~~~~~~~~~~~~~~
BUILDSTDERR:         (              )
BUILDSTDERR: exonerate-server.c:669:40: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'guint64' {aka 'long unsigned int'} [-Wformat=]
BUILDSTDERR:              (*reply) = g_strdup_printf("dbinfo: %s %s"
BUILDSTDERR:                                         ^~~~~~~~~~~~~~~
BUILDSTDERR: exonerate-server.c:676:19:
BUILDSTDERR:                    server->dataset->header->number_of_seqs,
BUILDSTDERR:                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: exonerate-server.c:669:40: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 5 has type 'guint64' {aka 'long unsigned int'} [-Wformat=]
BUILDSTDERR: exonerate-server.c:669:40: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 6 has type 'guint64' {aka 'long unsigned int'} [-Wformat=]
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o exonerate-server  exonerate-server.o ../../src/general/socket.o                                  ../../src/general/argument.o                                ../../src/comparison/hspset.o                               ../../src/comparison/match.o                                ../../src/comparison/wordhood.o                             ../../src/database/dataset.o                                ../../src/database/index.o                                  ../../src/database/fastadb.o                                ../../src/struct/bitarray.o                                 ../../src/struct/sparsecache.o                              ../../src/struct/matrix.o                                   ../../src/struct/splaytree.o                                ../../src/struct/noitree.o                                  ../../src/struct/vfsm.o                                     ../../src/struct/pqueue.o                                   ../../src/struct/rangetree.o                                ../../src/struct/recyclebin.o                               ../../src/sequence/sequence.o                               ../../src/sequence/alphabet.o                               ../../src/sequence/translate.o                              ../../src/sequence/splice.o                                 ../../src/sequence/submat.o                                 ../../src/sequence/codonsubmat.o                            ../../src/general/compoundfile.o                            ../../src/general/lineparse.o                               ../../src/general/threadref.o                               -lm -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/program'
Making all in util
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/util'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastaclean.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastaclean  fastaclean.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastaclip.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastaclip  fastaclip.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastachecksum.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastachecksum  fastachecksum.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastacomposition.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastacomposition  fastacomposition.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastadiff.c
BUILDSTDERR: fastadiff.c: In function 'fasta_diff':
BUILDSTDERR: fastadiff.c:70:13: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:              comp = g_strcasecmp;
BUILDSTDERR:              ^~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/general/argument.h:26,
BUILDSTDERR:                  from fastadiff.c:19:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastadiff  fastadiff.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastaexplode.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastaexplode  fastaexplode.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastafetch.c
BUILDSTDERR: fastafetch.c: In function 'get_query_list':
BUILDSTDERR: fastafetch.c:121:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      if(!g_strcasecmp(query, "stdin")){
BUILDSTDERR:      ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/general/argument.h:26,
BUILDSTDERR:                  from fastafetch.c:21:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastafetch  fastafetch.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastahardmask.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastahardmask  fastahardmask.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastaindex.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastaindex  fastaindex.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastalength.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastalength  fastalength.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastanrdb.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastanrdb  fastanrdb.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastaoverlap.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastaoverlap  fastaoverlap.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastareformat.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastareformat  fastareformat.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastaremove.c
BUILDSTDERR: fastaremove.c: In function 'Argument_main':
BUILDSTDERR: fastaremove.c:73:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      if(!g_strcasecmp(remove_path, "stdin")){
BUILDSTDERR:      ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/general/argument.h:26,
BUILDSTDERR:                  from fastaremove.c:19:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastaremove  fastaremove.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastarevcomp.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastarevcomp  fastarevcomp.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastasoftmask.c
BUILDSTDERR: fastasoftmask.c: In function 'fasta_softmask':
BUILDSTDERR: fastasoftmask.c:67:36: warning: self-comparison always evaluates to false [-Wtautological-compare]
BUILDSTDERR:          if(fdbs_unmasked->seq->len != fdbs_unmasked->seq->len)
BUILDSTDERR:                                     ^~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastasoftmask  fastasoftmask.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastasort.c
BUILDSTDERR: fastasort.c: In function 'SortKey_Mask_create':
BUILDSTDERR: fastasort.c:130:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      if(!g_strcasecmp(sort_key, "id"))
BUILDSTDERR:      ^~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/general/argument.h:26,
BUILDSTDERR:                  from fastasort.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: fastasort.c:132:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      else if(!g_strcasecmp(sort_key, "len"))
BUILDSTDERR:      ^~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/general/argument.h:26,
BUILDSTDERR:                  from fastasort.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
BUILDSTDERR: fastasort.c:134:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      else if(!g_strcasecmp(sort_key, "seq"))
BUILDSTDERR:      ^~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:79,
BUILDSTDERR:                  from ../../src/general/argument.h:26,
BUILDSTDERR:                  from fastasort.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gstrfuncs.h:201:23: note: declared here
BUILDSTDERR:  gint                  g_strcasecmp     (const gchar *s1,
BUILDSTDERR:                        ^~~~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastasort  fastasort.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastasplit.c
BUILDSTDERR: fastasplit.c: In function 'Argument_main':
BUILDSTDERR: fastasplit.c:92:13: warning: 'g_basename' is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations]
BUILDSTDERR:              output_dir, G_DIR_SEPARATOR, g_basename(query_path));
BUILDSTDERR:              ^~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/glib-2.0/glib.h:48,
BUILDSTDERR:                  from ../../src/general/argument.h:26,
BUILDSTDERR:                  from fastasplit.c:20:
BUILDSTDERR: /usr/include/glib-2.0/glib/gfileutils.h:163:14: note: declared here
BUILDSTDERR:  const gchar *g_basename         (const gchar *file_name);
BUILDSTDERR:               ^~~~~~~~~~
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastasplit  fastasplit.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastasubseq.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastasubseq  fastasubseq.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastatranslate.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastatranslate  fastatranslate.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastavalidcds.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastavalidcds  fastavalidcds.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fasta2esd.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fasta2esd  fasta2esd.o ../../src/database/dataset.o                    ../../src/struct/bitarray.o                     ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c fastaannotatecdna.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o fastaannotatecdna  fastaannotatecdna.o ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I.  -I../../src/sequence              -I../../src/database              -I../../src/struct                -I../../src/comparison            -I../../src/general    -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -c esd2esi.c
gcc  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -pie -Wl,-z,now -o esd2esi  esd2esi.o ../../src/database/dataset.o                      ../../src/database/index.o                        ../../src/general/threadref.o                     ../../src/struct/bitarray.o                       ../../src/struct/vfsm.o                           ../../src/struct/pqueue.o                         ../../src/struct/recyclebin.o                     ../../src/struct/rangetree.o                      ../../src/struct/noitree.o                        ../../src/struct/splaytree.o                      ../../src/sequence/submat.o                       ../../src/sequence/codonsubmat.o                  ../../src/comparison/wordhood.o                   ../../src/comparison/hspset.o                     ../../src/comparison/match.o                      ../../src/sequence/sequence.o            ../../src/sequence/alphabet.o            ../../src/sequence/splice.o              ../../src/sequence/translate.o           ../../src/database/fastadb.o             ../../src/general/argument.o             ../../src/general/compoundfile.o         ../../src/general/lineparse.o            ../../src/struct/sparsecache.o           ../../src/struct/matrix.o                -lm -lglib-2.0 
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/util'
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src'
make[1]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src'
Making all in test
make[1]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test'
Making all in data
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/data'
Making all in cdna
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/cdna'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/cdna'
Making all in protein
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/protein'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/protein'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/data'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/data'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/data'
Making all in exonerate
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/exonerate'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/exonerate'
Making all in ipcress
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/ipcress'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/ipcress'
Making all in util
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/util'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/util'
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test'
make[1]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test'
make[1]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0'
make[1]: Nothing to be done for 'all-am'.
make[1]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0'
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.OsD1vd
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64
+ cd exonerate-2.4.0
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64 'INSTALL=/usr/bin/install -p'
Making install in doc
make[1]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc'
Making install in man
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man'
Making install in man1
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man/man1'
make[4]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man/man1'
make[4]: Nothing to be done for 'install-exec-am'.
/usr/bin/make  install-man1
make[5]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man/man1'
/bin/sh ../../../mkinstalldirs /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/man/man1
mkdir /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr
mkdir /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share
mkdir /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/man
mkdir /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/man/man1
 /usr/bin/install -p -m 644 ./exonerate.1 /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/man/man1/exonerate.1
 /usr/bin/install -p -m 644 ./ipcress.1 /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/man/man1/ipcress.1
 /usr/bin/install -p -m 644 ./exonerate-server.1 /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/man/man1/exonerate-server.1
 /usr/bin/install -p -m 644 ./fastautils.1 /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/man/man1/fastautils.1
make[5]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man/man1'
make[4]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man/man1'
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man/man1'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man'
make[4]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man'
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc/man'
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/doc'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc'
make[1]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/doc'
Making install in src
make[1]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src'
Making install in struct
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/struct'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/struct'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/struct'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/struct'
Making install in general
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/general'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/general'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/general'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/general'
Making install in sequence
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/sequence'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/sequence'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/sequence'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/sequence'
Making install in comparison
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/comparison'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/comparison'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/comparison'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/comparison'
Making install in database
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/database'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/database'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/database'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/database'
Making install in c4
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/c4'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/c4'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/c4'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/c4'
Making install in bsdp
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/bsdp'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/bsdp'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/bsdp'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/bsdp'
Making install in sdp
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/sdp'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/sdp'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/sdp'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/sdp'
Making install in model
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/model'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/model'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/model'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/model'
Making install in hub
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/hub'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/hub'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/hub'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/hub'
Making install in program
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/program'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/program'
/bin/sh ../../mkinstalldirs /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin
mkdir /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin
  /usr/bin/install -p  exonerate /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/exonerate
  /usr/bin/install -p  ipcress /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/ipcress
  /usr/bin/install -p  exonerate-server /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/exonerate-server
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/program'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/program'
Making install in util
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/util'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src/util'
/bin/sh ../../mkinstalldirs /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin
  /usr/bin/install -p  fastaclean /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaclean
  /usr/bin/install -p  fastaclip /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaclip
  /usr/bin/install -p  fastachecksum /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastachecksum
  /usr/bin/install -p  fastacomposition /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastacomposition
  /usr/bin/install -p  fastadiff /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastadiff
  /usr/bin/install -p  fastaexplode /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaexplode
  /usr/bin/install -p  fastafetch /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastafetch
  /usr/bin/install -p  fastahardmask /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastahardmask
  /usr/bin/install -p  fastaindex /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaindex
  /usr/bin/install -p  fastalength /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastalength
  /usr/bin/install -p  fastanrdb /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastanrdb
  /usr/bin/install -p  fastaoverlap /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaoverlap
  /usr/bin/install -p  fastareformat /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastareformat
  /usr/bin/install -p  fastaremove /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaremove
  /usr/bin/install -p  fastarevcomp /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastarevcomp
  /usr/bin/install -p  fastasoftmask /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastasoftmask
  /usr/bin/install -p  fastasort /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastasort
  /usr/bin/install -p  fastasplit /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastasplit
  /usr/bin/install -p  fastasubseq /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastasubseq
  /usr/bin/install -p  fastatranslate /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastatranslate
  /usr/bin/install -p  fastavalidcds /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastavalidcds
  /usr/bin/install -p  fasta2esd /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fasta2esd
  /usr/bin/install -p  fastaannotatecdna /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaannotatecdna
  /usr/bin/install -p  esd2esi /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/esd2esi
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/util'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src/util'
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src'
make[1]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/src'
Making install in test
make[1]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test'
Making install in data
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/data'
Making install in cdna
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/cdna'
make[4]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/cdna'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/cdna'
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/cdna'
Making install in protein
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/protein'
make[4]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/protein'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/protein'
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/data/protein'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/data'
make[4]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/data'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/data'
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/data'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/data'
Making install in exonerate
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/exonerate'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/exonerate'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/exonerate'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/exonerate'
Making install in ipcress
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/ipcress'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/ipcress'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/ipcress'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/ipcress'
Making install in util
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/util'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test/util'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/util'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test/util'
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test'
make[3]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0/test'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test'
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test'
make[1]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0/test'
make[1]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0'
make[2]: Entering directory '/builddir/build/BUILD/exonerate-2.4.0'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0'
make[1]: Leaving directory '/builddir/build/BUILD/exonerate-2.4.0'
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 2.4.0-6.fc29 --unique-debug-suffix -2.4.0-6.fc29.riscv64 --unique-debug-src-base exonerate-2.4.0-6.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/exonerate-2.4.0
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaclip
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastareformat
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaoverlap
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaexplode
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/exonerate-server
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastasoftmask
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/ipcress
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastafetch
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastahardmask
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastasort
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaannotatecdna
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastalength
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaclean
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/exonerate
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastasubseq
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/esd2esi
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastanrdb
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaremove
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastavalidcds
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastacomposition
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastachecksum
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastadiff
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastarevcomp
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastatranslate
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fasta2esd
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastaindex
extracting debug info from /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/bin/fastasplit
/usr/lib/rpm/sepdebugcrcfix: Updated 27 CRC32s, 0 CRC32s did match.
BUILDSTDERR: cpio: src/program/c4_model_lookup.c: Cannot stat: No such file or directory
BUILDSTDERR: 36374 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.xwiOYi
Processing files: exonerate-2.4.0-6.fc29.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.gkzsvW
+ umask 022
+ cd /builddir/build/BUILD
+ cd exonerate-2.4.0
+ DOCDIR=/builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/doc/exonerate
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/doc/exonerate
+ cp -pr README /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/doc/exonerate
+ cp -pr ChangeLog /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/doc/exonerate
+ cp -pr AUTHORS /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/doc/exonerate
+ cp -pr TODO /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/doc/exonerate
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.O6I9Dj
+ umask 022
+ cd /builddir/build/BUILD
+ cd exonerate-2.4.0
+ LICENSEDIR=/builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/licenses/exonerate
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/licenses/exonerate
+ cp -pr COPYING /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64/usr/share/licenses/exonerate
+ exit 0
Provides: exonerate = 2.4.0-6.fc29 exonerate(riscv-64) = 2.4.0-6.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libglib-2.0.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) rtld(GNU_HASH)
Processing files: exonerate-debugsource-2.4.0-6.fc29.riscv64
Provides: exonerate-debugsource = 2.4.0-6.fc29 exonerate-debugsource(riscv-64) = 2.4.0-6.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: exonerate-debuginfo-2.4.0-6.fc29.riscv64
Provides: debuginfo(build-id) = 021ae0701b176e0408de9a34efde14b91e87dd8c debuginfo(build-id) = 1b2e09ae859e2e5807679d4f25cd249c1badf21a debuginfo(build-id) = 1f131d9337a9bf28cd918a0b8aa3f2ec85779de2 debuginfo(build-id) = 26445d1854b4422a378a8a07959eebeebd7f3109 debuginfo(build-id) = 329484e5228f4a55013ad1e5a627c8ff6f377564 debuginfo(build-id) = 438629b81ed29c0f99bf9cc686319afcf8830173 debuginfo(build-id) = 502051f9e8eda62ed4e118c1ed3797a34a0a499e debuginfo(build-id) = 54835d5e9ad8ff6096f2f38999a297b360c062dd debuginfo(build-id) = 54d09541163265d610cdaa21006aa96b0870a445 debuginfo(build-id) = 5c3672dcd1033541d73254a39bedb16db736e371 debuginfo(build-id) = 71fe0e68c77c4067f255c5291c7a5f40899eca24 debuginfo(build-id) = 77b1e06839a93b02740d2ba6d6534e6fe8bd69c3 debuginfo(build-id) = 7835fe9de3e3bf8796d80e67c0e70fb8d4dadce0 debuginfo(build-id) = 7c693728ec18640c3734e2ed3d38a368171761a5 debuginfo(build-id) = 7e103c84615def860b5cd8d0b040b73ad920c889 debuginfo(build-id) = 85cce5b3e742cbbb34f092260488cb6fdb7d8320 debuginfo(build-id) = 9c219e443936da430ba649c6ba5421be6b3ec9d6 debuginfo(build-id) = aa71a9901d0274bd0b543a4054232d119004b435 debuginfo(build-id) = afe47e7caa53a749dea6c054166828985be355a6 debuginfo(build-id) = b9d190aee1bb0cbe823dcbc1c1628ebc85f43079 debuginfo(build-id) = c89568d56ee67441063a243b865e8d5eb6b9f3ed debuginfo(build-id) = deb450a06da64f91eed9561a98d42993d628da83 debuginfo(build-id) = dfb66f3598f6facf4c130b8e435904934161b52e debuginfo(build-id) = ea9cd63c8d11fe9ba3357998f2c2a4e226a22bf7 debuginfo(build-id) = ecb5e4f5ea1951733fff4884ef59441ee2cffd3d debuginfo(build-id) = f69d7dc05229e8c97e57c9fdf24bb0a1c125a66b debuginfo(build-id) = f71f8c740a1a8d17eeda356f19e452ed779fcc8b exonerate-debuginfo = 2.4.0-6.fc29 exonerate-debuginfo(riscv-64) = 2.4.0-6.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: exonerate-debugsource(riscv-64) = 2.4.0-6.fc29
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64
Wrote: /builddir/build/RPMS/exonerate-2.4.0-6.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/exonerate-debugsource-2.4.0-6.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/exonerate-debuginfo-2.4.0-6.fc29.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.v80kSH
+ umask 022
+ cd /builddir/build/BUILD
+ cd exonerate-2.4.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/exonerate-2.4.0-6.fc29.riscv64
+ exit 0
Child return code was: 0