Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/clustal-omega.spec'], chrootPath='/var/lib/mock/f29-build-26494-13757/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/clustal-omega.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/clustal-omega-1.2.4-7.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/clustal-omega.spec'], chrootPath='/var/lib/mock/f29-build-26494-13757/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/clustal-omega.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.X80DZ6 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf clustal-omega-1.2.4 + /usr/bin/gzip -dc /builddir/build/SOURCES/clustal-omega-1.2.4.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd clustal-omega-1.2.4 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i 's/\r$//' README + sed -i s/mktemp/mkstemp/g src/clustal-omega.c + sed -i 's/\${AM_CFLAGS} -O3/${AM_CFLAGS}/g' configure + sed -i 's/\${AM_CXXFLAGS} -O3/${AM_CXXFLAGS}/g' configure + sed -i '/inline float log/d' src/hhalign/util-C.h + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.PR2d12 + umask 022 + cd /builddir/build/BUILD + cd clustal-omega-1.2.4 + export 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + LDFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub BUILDSTDERR: ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess BUILDSTDERR: ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + ./configure --build=riscv64-redhat-linux-gnu --host=riscv64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static configure: Welcome to Clustal Omega - version 1.2.4 (AndreaGiacomo) +NMMMMMMMMMS= MMMMM? :MMMMM8 IMMMMS MMMMM, ~MMMMN ,MMMMM =MMMMM MMMMM ?MMMMM +MMMMM MMMMMS MMMMM MMMMM MMMMM: MMMMM MMMMM+ MMMMM MMMMM~ MMMMM MMMMM MMMMMZ MMMMM MMMMM ,MMMMZ MMMM8 MMMM+ MMMMS MMMM, MMMMO MMMM ,N SMMM MMM8 +8 ,M7 M+ M+ :M8 ,MMMMMMMMMMMMI MMMMMMMMMMMM8 ,MMMMMMMMMMMM8 MMMMMMMMMMMM8 ,MMMMMMMMMMMMN MMMMMMMMMMMM8 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for riscv64-redhat-linux-gnu-gcc... no checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking build system type... riscv64-redhat-linux-gnu checking host system type... riscv64-redhat-linux-gnu checking whether make sets $(MAKE)... (cached) yes checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for riscv64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for riscv64-redhat-linux-gnu-ar... no checking for ar... ar checking for riscv64-redhat-linux-gnu-strip... no checking for strip... strip checking for riscv64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for a BSD-compatible install... /usr/bin/install -c checking for riscv64-redhat-linux-gnu-gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking for riscv64-redhat-linux-gnu-g++... no checking for riscv64-redhat-linux-gnu-c++... no checking for riscv64-redhat-linux-gnu-gpp... no checking for riscv64-redhat-linux-gnu-aCC... no checking for riscv64-redhat-linux-gnu-CC... no checking for riscv64-redhat-linux-gnu-cxx... no checking for riscv64-redhat-linux-gnu-cc++... no checking for riscv64-redhat-linux-gnu-cl.exe... no checking for riscv64-redhat-linux-gnu-FCC... no checking for riscv64-redhat-linux-gnu-KCC... no checking for riscv64-redhat-linux-gnu-RCC... no checking for riscv64-redhat-linux-gnu-xlC_r... no checking for riscv64-redhat-linux-gnu-xlC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to run the C++ preprocessor... g++ -E checking for ANSI C header files... (cached) yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for memory.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking for inline... inline checking for log in -lm... yes checking for log2 in -lm... yes checking argtable2.h usability... yes checking argtable2.h presence... yes checking for argtable2.h... yes checking for arg_parse in -largtable2... yes checking for OpenMP flag of C compiler... -fopenmp checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for ntons... no checking for ntonl... no checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 8 checking size of unsigned long long... 8 checking for stroul... no checking for strtoull... yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for off_t... yes checking size of fpos_t... 16 checking if malloc debugging is wanted... no checking whether to build with debug information... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating clustalo.pc config.status: creating Doxyfile config.status: creating src/clustal/Makefile config.status: creating src/hhalign/Makefile config.status: creating src/kmpp/Makefile config.status: creating src/squid/Makefile config.status: creating src/config.h config.status: executing src/clustal-omega-config.h commands config.status: creating src/clustal-omega-config.h - prefix CLUSTAL_OMEGA for src/config.h defines config.status: src/clustal-omega-config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands + make V=1 -j4 Making all in src make[1]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' make all-recursive make[2]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' Making all in hhalign make[3]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/hhalign' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o hhalign.lo hhalign.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hhalign.cpp -fPIC -DPIC -o .libs/hhalign.o BUILDSTDERR: In file included from hhalign.cpp:70: BUILDSTDERR: hhhmm-C.h: In member function 'int HMM::ReadHMMer3(FILE*, char*)': BUILDSTDERR: hhhmm-C.h:1141:12: warning: variable 'dAlphaInv' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double dAlphaInv = 1.00 / (double)(iAlpha); /* weight of AA */ BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: hhhmm-C.h: In member function 'void HMM::WriteToFileHMMER(char*)': BUILDSTDERR: hhhmm-C.h:2206:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: for (i=0; i<=par.argc-1; ++i) fprintf(outf,"%s ",par.argv[i]); fprintf(outf,"\n"); BUILDSTDERR: ^~~ BUILDSTDERR: hhhmm-C.h:2206:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: for (i=0; i<=par.argc-1; ++i) fprintf(outf,"%s ",par.argv[i]); fprintf(outf,"\n"); BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from hhalign.cpp:71: BUILDSTDERR: hhalignment-C.h: In member function 'void Alignment::Read(FILE*, char*, char*)': BUILDSTDERR: hhalignment-C.h:250:32: warning: variable 'ptr2' set but not used [-Wunused-but-set-variable] BUILDSTDERR: char *ptr1, *ptr2; BUILDSTDERR: ^~~~ BUILDSTDERR: hhalignment-C.h: In member function 'int Alignment::FilterWithCoreHMM(char*, float, HMM&)': BUILDSTDERR: hhalignment-C.h:1473:19: warning: variable 'score_M' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float score_M=0.0; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: hhalignment-C.h:1474:19: warning: variable 'score_prev' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float score_prev=0.0; BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: hhalignment-C.h: In member function 'void Alignment::Amino_acid_frequencies_and_transitions_from_M_state(HMM&, char*)': BUILDSTDERR: hhalignment-C.h:1981:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] BUILDSTDERR: if (ncol=NCOLMIN) BUILDSTDERR: ^ BUILDSTDERR: hhalignment-C.h: In member function 'void Alignment::Transitions_from_D_state(HMM&, char*)': BUILDSTDERR: hhalignment-C.h:2485:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] BUILDSTDERR: if (ncolfilename' may be undefined [-Wsequence-point] BUILDSTDERR: (*mseq)->filename = CKFREE((*mseq)->filename); /bin/sh ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util.lo util.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util.c -fPIC -DPIC -o .libs/util.o /bin/sh ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o weights.lo weights.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c weights.c -fPIC -DPIC -o .libs/weights.o /bin/sh ../../libtool --tag=CC --mode=link gcc -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -o libclustal.la hhalign_wrapper.lo ktuple_pair.lo list.lo log.lo muscle_upgma.lo muscle_tree.lo mbed.lo pair_dist.lo progress.lo seq.lo symmatrix.lo tree.lo util.lo weights.lo -largtable2 -lm libtool: link: ar cru .libs/libclustal.a .libs/hhalign_wrapper.o .libs/ktuple_pair.o .libs/list.o .libs/log.o .libs/muscle_upgma.o .libs/muscle_tree.o .libs/mbed.o .libs/pair_dist.o .libs/progress.o .libs/seq.o .libs/symmatrix.o .libs/tree.o .libs/util.o .libs/weights.o libtool: link: ranlib .libs/libclustal.a libtool: link: ( cd ".libs" && rm -f "libclustal.la" && ln -s "../libclustal.la" "libclustal.la" ) make[3]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/clustal' make[3]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o clustal-omega.lo clustal-omega.c g++ -DHAVE_CONFIG_H -I. -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o main.o main.cpp gcc -DHAVE_CONFIG_H -I. -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mymain.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clustal-omega.c -fPIC -DPIC -o .libs/clustal-omega.o BUILDSTDERR: clustal-omega.c: In function 'AlnToHHMFile': BUILDSTDERR: clustal-omega.c:393:14: warning: comparison between pointer and integer BUILDSTDERR: if (NULL == mkstemp(tmp_aln)) { BUILDSTDERR: ^~ BUILDSTDERR: clustal-omega.c: In function 'AlnToHMMFile': BUILDSTDERR: clustal-omega.c:479:14: warning: comparison between pointer and integer BUILDSTDERR: if (NULL == mkstemp(tmp_aln)) { BUILDSTDERR: ^~ BUILDSTDERR: clustal-omega.c:502:18: warning: comparison between pointer and integer BUILDSTDERR: if (NULL == mkstemp(tmp_hmm)) { BUILDSTDERR: ^~ BUILDSTDERR: clustal-omega.c: In function 'AlnToHMM': BUILDSTDERR: clustal-omega.c:573:14: warning: comparison between pointer and integer BUILDSTDERR: if (NULL == mkstemp(pcHMM)) { BUILDSTDERR: ^~ BUILDSTDERR: At top level: BUILDSTDERR: clustal-omega.c:134:18: warning: 'ITERATION_SCORE_IMPROVEMENT_THRESHOLD' defined but not used [-Wunused-const-variable=] BUILDSTDERR: static const int ITERATION_SCORE_IMPROVEMENT_THRESHOLD = 0.01; BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=link gcc -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -static -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -o libclustalo.la -rpath /usr/lib64 clustal-omega.lo clustal/libclustal.la hhalign/libhhalign.la squid/libsquid.la kmpp/libkmpp.la -largtable2 -lm libtool: link: (cd .libs/libclustalo.lax/libclustal.a && ar x "/builddir/build/BUILD/clustal-omega-1.2.4/src/clustal/.libs/libclustal.a") libtool: link: (cd .libs/libclustalo.lax/libhhalign.a && ar x "/builddir/build/BUILD/clustal-omega-1.2.4/src/hhalign/.libs/libhhalign.a") libtool: link: (cd .libs/libclustalo.lax/libsquid.a && ar x "/builddir/build/BUILD/clustal-omega-1.2.4/src/squid/.libs/libsquid.a") libtool: link: (cd .libs/libclustalo.lax/libkmpp.a && ar x "/builddir/build/BUILD/clustal-omega-1.2.4/src/kmpp/.libs/libkmpp.a") libtool: link: ar cru .libs/libclustalo.a .libs/clustal-omega.o .libs/libclustalo.lax/libclustal.a/hhalign_wrapper.o .libs/libclustalo.lax/libclustal.a/ktuple_pair.o .libs/libclustalo.lax/libclustal.a/muscle_tree.o .libs/libclustalo.lax/libclustal.a/list.o .libs/libclustalo.lax/libclustal.a/tree.o .libs/libclustalo.lax/libclustal.a/mbed.o .libs/libclustalo.lax/libclustal.a/weights.o .libs/libclustalo.lax/libclustal.a/pair_dist.o .libs/libclustalo.lax/libclustal.a/symmatrix.o .libs/libclustalo.lax/libclustal.a/util.o .libs/libclustalo.lax/libclustal.a/log.o .libs/libclustalo.lax/libclustal.a/progress.o .libs/libclustalo.lax/libclustal.a/seq.o .libs/libclustalo.lax/libclustal.a/muscle_upgma.o .libs/libclustalo.lax/libhhalign.a/hhalign.o .libs/libclustalo.lax/libsquid.a/dayhoff.o .libs/libclustalo.lax/libsquid.a/translate.o .libs/libclustalo.lax/libsquid.a/eps.o .libs/libclustalo.lax/libsquid.a/alignio.o .libs/libclustalo.lax/libsquid.a/cluster.o .libs/libclustalo.lax/libsquid.a/squidcore.o .libs/libclustalo.lax/libsquid.a/getopt.o .libs/libclustalo.lax/libsquid.a/rk.o .libs/libclustalo.lax/libsquid.a/gki.o .libs/libclustalo.lax/libsquid.a/shuffle.o .libs/libclustalo.lax/libsquid.a/seqencode.o .libs/libclustalo.lax/libsquid.a/sre_math.o .libs/libclustalo.lax/libsquid.a/sqio.o .libs/libclustalo.lax/libsquid.a/stack.o .libs/libclustalo.lax/libsquid.a/clustal.o .libs/libclustalo.lax/libsquid.a/msf.o .libs/libclustalo.lax/libsquid.a/gsi64.o .libs/libclustalo.lax/libsquid.a/selex.o .libs/libclustalo.lax/libsquid.a/stopwatch.o .libs/libclustalo.lax/libsquid.a/file.o .libs/libclustalo.lax/libsquid.a/sre_ctype.o .libs/libclustalo.lax/libsquid.a/iupac.o .libs/libclustalo.lax/libsquid.a/sqerror.o .libs/libclustalo.lax/libsquid.a/msa.o .libs/libclustalo.lax/libsquid.a/stockholm.o .libs/libclustalo.lax/libsquid.a/weight.o .libs/libclustalo.lax/libsquid.a/sre_string.o .libs/libclustalo.lax/libsquid.a/ssi.o .libs/libclustalo.lax/libsquid.a/phylip.o .libs/libclustalo.lax/libsquid.a/types.o .libs/libclustalo.lax/libsquid.a/aligneval.o .libs/libclustalo.lax/libsquid.a/hsregex.o .libs/libclustalo.lax/libsquid.a/a2m.o .libs/libclustalo.lax/libsquid.a/revcomp.o .libs/libclustalo.lax/libsquid.a/sre_random.o .libs/libclustalo.lax/libsquid.a/gsi.o .libs/libclustalo.lax/libsquid.a/vectorops.o .libs/libclustalo.lax/libkmpp.a/KmTree.o .libs/libclustalo.lax/libkmpp.a/KMeans.o .libs/libclustalo.lax/libkmpp.a/KmUtils.o libtool: link: ranlib .libs/libclustalo.a libtool: link: rm -fr .libs/libclustalo.lax libtool: link: ( cd ".libs" && rm -f "libclustalo.la" && ln -s "../libclustalo.la" "libclustalo.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -o clustalo main.o mymain.o libclustalo.la -largtable2 -lm libtool: link: g++ -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -o clustalo main.o mymain.o ./.libs/libclustalo.a -largtable2 -lm make[3]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' make[2]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' make[1]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' make[1]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ZcxhoZ + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64 + cd clustal-omega-1.2.4 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64 'INSTALL=/usr/bin/install -p' Making install in src make[1]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' Making install in hhalign make[2]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/hhalign' make[3]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/hhalign' make[3]: Nothing to be done for 'install-exec-am'. test -z "/usr/include/clustalo/hhalign" || /usr/bin/mkdir -p "/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/hhalign" /usr/bin/install -p -m 644 'general.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/hhalign/general.h' /usr/bin/install -p -m 644 'hhfunc.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/hhalign/hhfunc.h' make[3]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/hhalign' make[2]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/hhalign' Making install in squid make[2]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/squid' make[3]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/squid' make[3]: Nothing to be done for 'install-exec-am'. test -z "/usr/include/clustalo/squid" || /usr/bin/mkdir -p "/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid" /usr/bin/install -p -m 644 'gki.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/gki.h' /usr/bin/install -p -m 644 'gsi64.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/gsi64.h' /usr/bin/install -p -m 644 'msa.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/msa.h' /usr/bin/install -p -m 644 'rk.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/rk.h' /usr/bin/install -p -m 644 'squid.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/squid.h' /usr/bin/install -p -m 644 'stopwatch.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/stopwatch.h' /usr/bin/install -p -m 644 'sqfuncs.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/sqfuncs.h' /usr/bin/install -p -m 644 'sre_random.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/sre_random.h' /usr/bin/install -p -m 644 'ssi.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/ssi.h' /usr/bin/install -p -m 644 'stockholm.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/stockholm.h' /usr/bin/install -p -m 644 'vectorops.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/vectorops.h' /usr/bin/install -p -m 644 'version.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/squid/version.h' make[3]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/squid' make[2]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/squid' Making install in kmpp make[2]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/kmpp' make[3]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/kmpp' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/kmpp' make[2]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/kmpp' Making install in clustal make[2]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/clustal' make[3]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/clustal' make[3]: Nothing to be done for 'install-exec-am'. test -z "/usr/include/clustalo/clustal" || /usr/bin/mkdir -p "/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal" /usr/bin/install -p -m 644 'hhalign_wrapper.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/hhalign_wrapper.h' /usr/bin/install -p -m 644 'ktuple_pair.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/ktuple_pair.h' /usr/bin/install -p -m 644 'log.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/log.h' /usr/bin/install -p -m 644 'mbed.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/mbed.h' /usr/bin/install -p -m 644 'muscle_tree.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/muscle_tree.h' /usr/bin/install -p -m 644 'pair_dist.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/pair_dist.h' /usr/bin/install -p -m 644 'progress.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/progress.h' /usr/bin/install -p -m 644 'seq.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/seq.h' /usr/bin/install -p -m 644 'symmatrix.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/symmatrix.h' /usr/bin/install -p -m 644 'tree.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/tree.h' /usr/bin/install -p -m 644 'util.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/util.h' /usr/bin/install -p -m 644 'weights.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/clustal/weights.h' make[3]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/clustal' make[2]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src/clustal' make[2]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' make[3]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' test -z "/usr/lib64" || /usr/bin/mkdir -p "/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/lib64" /bin/sh ../libtool --mode=install /usr/bin/install -p 'libclustalo.la' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/lib64/libclustalo.la' libtool: install: /usr/bin/install -p .libs/libclustalo.lai /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/lib64/libclustalo.la libtool: install: /usr/bin/install -p .libs/libclustalo.a /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/lib64/libclustalo.a libtool: install: chmod 644 /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/lib64/libclustalo.a libtool: install: ranlib /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/lib64/libclustalo.a BUILDSTDERR: libtool: install: warning: remember to run `libtool --finish /usr/lib64' test -z "/usr/bin" || /usr/bin/mkdir -p "/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/bin" /bin/sh ../libtool --mode=install /usr/bin/install -p 'clustalo' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/bin/clustalo' libtool: install: /usr/bin/install -p clustalo /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/bin/clustalo test -z "/usr/include/clustalo/" || /usr/bin/mkdir -p "/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo/" /usr/bin/install -p -m 644 'clustal-omega-config.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo//clustal-omega-config.h' /usr/bin/install -p -m 644 'clustal-omega.h' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/include/clustalo//clustal-omega.h' make[3]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' make[2]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' make[1]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4/src' make[1]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4' make[2]: Entering directory '/builddir/build/BUILD/clustal-omega-1.2.4' make[2]: Nothing to be done for 'install-exec-am'. test -z "/usr/share/doc/clustal-omega" || /usr/bin/mkdir -p "/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/share/doc/clustal-omega" /usr/bin/install -p -m 644 'README' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/share/doc/clustal-omega/README' test -z "/usr/lib64/pkgconfig" || /usr/bin/mkdir -p "/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/lib64/pkgconfig" /usr/bin/install -p -m 644 'clustalo.pc' '/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/lib64/pkgconfig/clustalo.pc' make[2]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4' make[1]: Leaving directory '/builddir/build/BUILD/clustal-omega-1.2.4' + rm -f /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/lib64/libclustalo.la /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/lib64/libclustalo.a + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.2.4-7.fc29 --unique-debug-suffix -1.2.4-7.fc29.riscv64 --unique-debug-src-base clustal-omega-1.2.4-7.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/clustal-omega-1.2.4 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/bin/clustalo extracting debug info from /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/bin/clustalo /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. BUILDSTDERR: 3429 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: clustal-omega-1.2.4-7.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.j074AZ + umask 022 + cd /builddir/build/BUILD + cd clustal-omega-1.2.4 + DOCDIR=/builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/share/doc/clustal-omega + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/share/doc/clustal-omega + cp -pr COPYING /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/share/doc/clustal-omega + cp -pr README /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64/usr/share/doc/clustal-omega + exit 0 Provides: bundled(squid) = 1.9 clustal-omega = 1.2.4-7.fc29 clustal-omega(riscv-64) = 1.2.4-7.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libargtable2.so.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpthread.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: clustal-omega-devel-1.2.4-7.fc29.riscv64 Provides: clustal-omega-devel = 1.2.4-7.fc29 clustal-omega-devel(riscv-64) = 1.2.4-7.fc29 pkgconfig(clustalo) = 1.2.4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Processing files: clustal-omega-debugsource-1.2.4-7.fc29.riscv64 Provides: clustal-omega-debugsource = 1.2.4-7.fc29 clustal-omega-debugsource(riscv-64) = 1.2.4-7.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: clustal-omega-debuginfo-1.2.4-7.fc29.riscv64 Provides: clustal-omega-debuginfo = 1.2.4-7.fc29 clustal-omega-debuginfo(riscv-64) = 1.2.4-7.fc29 debuginfo(build-id) = a53ac89254a1d55bd49a8262a00c544651484e98 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: clustal-omega-debugsource(riscv-64) = 1.2.4-7.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64 Wrote: /builddir/build/RPMS/clustal-omega-1.2.4-7.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/clustal-omega-devel-1.2.4-7.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/clustal-omega-debugsource-1.2.4-7.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/clustal-omega-debuginfo-1.2.4-7.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.jTMfFG + umask 022 + cd /builddir/build/BUILD + cd clustal-omega-1.2.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/clustal-omega-1.2.4-7.fc29.riscv64 + exit 0 Child return code was: 0