Mock Version: 1.4.9
Mock Version: 1.4.9
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/clipper.spec'], chrootPath='/var/lib/mock/f29-build-6508-1596/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fd8860>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/clipper.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Wrote: /builddir/build/SRPMS/clipper-2.1-20160712.1.fc29.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/clipper.spec'], chrootPath='/var/lib/mock/f29-build-6508-1596/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fd8860>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/clipper.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TDWW5f
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf clipper-2.1.20160708
+ /usr/bin/gzip -dc /builddir/build/SOURCES/clipper-2.1.20160708.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd clipper-2.1.20160708
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (clipper-pkgconfig.patch):'
Patch #0 (clipper-pkgconfig.patch):
+ /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0
patching file clipper.pc.in
+ echo 'Patch #1 (clipper-spacegroupdata.patch):'
Patch #1 (clipper-spacegroupdata.patch):
+ /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0
patching file clipper/core/spacegroup_data.h
+ sed -i 's/\r//' dox/coordtypes.dox
+ sed -i 's/\r//' dox/develop.dox
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.o8ItyI
+ umask 022
+ cd /builddir/build/BUILD
+ cd clipper-2.1.20160708
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ '[' 1 = 1 ']'
BUILDSTDERR: +++ dirname ./configure
BUILDSTDERR: ++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
BUILDSTDERR: ++ basename ./build-aux/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./build-aux/config.sub
BUILDSTDERR: ++ basename ./build-aux/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build-aux/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './build-aux/config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
BUILDSTDERR: ++ basename ./build-aux/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./build-aux/config.guess
BUILDSTDERR: ++ basename ./build-aux/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build-aux/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './build-aux/config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
BUILDSTDERR: ++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./build-aux/ltmain.sh
+ ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-contrib --enable-phs --enable-cns --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-fortran --enable-shared --disable-static
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for riscv64-koji-linux-gnu-gcc... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for riscv64-koji-linux-gnu-g++... no
checking for riscv64-koji-linux-gnu-c++... no
checking for riscv64-koji-linux-gnu-gpp... no
checking for riscv64-koji-linux-gnu-aCC... no
checking for riscv64-koji-linux-gnu-CC... no
checking for riscv64-koji-linux-gnu-cxx... no
checking for riscv64-koji-linux-gnu-cc++... no
checking for riscv64-koji-linux-gnu-cl.exe... no
checking for riscv64-koji-linux-gnu-FCC... no
checking for riscv64-koji-linux-gnu-KCC... no
checking for riscv64-koji-linux-gnu-RCC... no
checking for riscv64-koji-linux-gnu-xlC_r... no
checking for riscv64-koji-linux-gnu-xlC... no
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking for riscv64-koji-linux-gnu-ar... no
checking for riscv64-koji-linux-gnu-lib... no
checking for riscv64-koji-linux-gnu-link... no
checking for ar... ar
checking the archiver (ar) interface... ar
checking build system type... riscv64-koji-linux-gnu
checking host system type... riscv64-koji-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert riscv64-koji-linux-gnu file names to riscv64-koji-linux-gnu format... func_convert_file_noop
checking how to convert riscv64-koji-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for riscv64-koji-linux-gnu-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for riscv64-koji-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for riscv64-koji-linux-gnu-ar... ar
checking for archiver @FILE support... @
checking for riscv64-koji-linux-gnu-strip... no
checking for strip... strip
checking for riscv64-koji-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for riscv64-koji-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether to enable maintainer-specific portions of Makefiles... no
checking for riscv64-koji-linux-gnu-g77... no
checking for riscv64-koji-linux-gnu-xlf... no
checking for riscv64-koji-linux-gnu-f77... no
checking for riscv64-koji-linux-gnu-frt... no
checking for riscv64-koji-linux-gnu-pgf77... no
checking for riscv64-koji-linux-gnu-cf77... no
checking for riscv64-koji-linux-gnu-fort77... no
checking for riscv64-koji-linux-gnu-fl32... no
checking for riscv64-koji-linux-gnu-af77... no
checking for riscv64-koji-linux-gnu-xlf90... no
checking for riscv64-koji-linux-gnu-f90... no
checking for riscv64-koji-linux-gnu-pgf90... no
checking for riscv64-koji-linux-gnu-pghpf... no
checking for riscv64-koji-linux-gnu-epcf90... no
checking for riscv64-koji-linux-gnu-gfortran... no
checking for riscv64-koji-linux-gnu-g95... no
checking for riscv64-koji-linux-gnu-xlf95... no
checking for riscv64-koji-linux-gnu-f95... no
checking for riscv64-koji-linux-gnu-fort... no
checking for riscv64-koji-linux-gnu-ifort... no
checking for riscv64-koji-linux-gnu-ifc... no
checking for riscv64-koji-linux-gnu-efc... no
checking for riscv64-koji-linux-gnu-pgfortran... no
checking for riscv64-koji-linux-gnu-pgf95... no
checking for riscv64-koji-linux-gnu-lf95... no
checking for riscv64-koji-linux-gnu-ftn... no
checking for riscv64-koji-linux-gnu-nagfor... no
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lgfortran -lm
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking for library containing cos... -lm
checking for prefixed single-precision FFTW2 (sfftw.h)... yes
checking for the pthreads library -lpthreads... no
checking for the pthreads library -lpthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking for MMDB_CCIF_Init in -lmmdb2... yes
checking mmdb2/mmdb_manager.h usability... yes
checking mmdb2/mmdb_manager.h presence... yes
checking for mmdb2/mmdb_manager.h... yes
checking for ccp4_banner in -lccp4c... yes
checking ccp4/ccp4_general.h usability... yes
checking ccp4/ccp4_general.h presence... yes
checking for ccp4/ccp4_general.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating clipper/Makefile
config.status: creating clipper/core/Makefile
config.status: creating clipper/contrib/Makefile
config.status: creating examples/Makefile
config.status: creating clipper.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
       
        Configuration Summary
 ------------------------------
core:          yes
contrib:       yes
phs:           yes
cns:           yes
mmdb:          yes
minimol:       yes
cif:           yes
ccp4:          yes
cctbx:         no
fortran:       yes
 
+ sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool
+ make -j4
make  all-recursive
make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708'
Making all in clipper
make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper'
Making all in core
make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core'
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c atomsf.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cell.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-cell.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coords.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-coords.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nxmap_operator.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o
BUILDSTDERR: atomsf.cpp: In member function 'bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, clipper::ftype&, std::vector<double>&) const':
BUILDSTDERR: atomsf.cpp:657:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::AtomShapeFn::TYPE>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < params.size(); i++ ) if ( params[i] < 5 )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~
BUILDSTDERR: atomsf.cpp:702:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::AtomShapeFn::TYPE>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < params.size(); i++ )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~
BUILDSTDERR: atomsf.cpp: In member function 'bool clipper::AtomShapeFn::rho_curv(const clipper::Coord_orth&, clipper::ftype&, std::vector<double>&, clipper::Matrix<double>&) const':
BUILDSTDERR: atomsf.cpp:770:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::AtomShapeFn::TYPE>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < params.size(); i++ ) if ( params[i] < 5 )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~
BUILDSTDERR: atomsf.cpp:772:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::AtomShapeFn::TYPE>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < params.size(); i++ ) if ( params[i] < 5 )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~
BUILDSTDERR: atomsf.cpp:773:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::AtomShapeFn::TYPE>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( int j = 0; j < params.size(); j++ ) if ( params[j] < 5 )
BUILDSTDERR:                         ~~^~~~~~~~~~~~~~~
BUILDSTDERR: atomsf.cpp: In member function 'bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, std::vector<double>&) const':
BUILDSTDERR: atomsf.cpp:806:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::AtomShapeFn::TYPE>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < params.size(); i++ ) grad[i] = g[params[i]];
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~
BUILDSTDERR: atomsf.cpp: In member function 'void clipper::AtomShapeFn::init(const clipper::String&, const ftype&)':
BUILDSTDERR: atomsf.cpp:820:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < element.length(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c derivs.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ramachandran.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_instance.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp
BUILDSTDERR: ramachandran.cpp: In member function 'void clipper::Prob_phi_2d::accumulate(const ftype32*)':
BUILDSTDERR: ramachandran.cpp:2204:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:  { for ( int i = 0; i < data_.size(); i++ ) data_[i] += table[i]; }
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: ramachandran.cpp: In member function 'void clipper::Prob_phi_2d::normalise()':
BUILDSTDERR: ramachandran.cpp:2233:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < data_.size(); i++ ) s += data_[i];
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: ramachandran.cpp:2235:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < data_.size(); i++ ) data_[i] *= s;
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fftmap.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o
BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache<T>::~ObjectCache() [with T = clipper::Spgr_cacheobj]':
BUILDSTDERR: clipper_instance.cpp:145:18:   required from here
BUILDSTDERR: clipper_instance.cpp:79:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::Spgr_cacheobj>*, std::allocator<std::pair<int, clipper::Spgr_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < cache_.size(); i++ ) {
BUILDSTDERR: clipper_instance.cpp: In instantiation of 'void clipper::ObjectCache<T>::debug() const [with T = clipper::Spgr_cacheobj]':
BUILDSTDERR: clipper_instance.cpp:145:18:   required from here
BUILDSTDERR: clipper_instance.cpp:139:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::Spgr_cacheobj>*, std::allocator<std::pair<int, clipper::Spgr_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < cache_.size(); i++ )
BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache<T>::Reference clipper::ObjectCache<T>::cache(const typename T::Key&) [with T = clipper::Spgr_cacheobj; typename T::Key = clipper::Spgr_descr]':
BUILDSTDERR: clipper_instance.cpp:145:18:   required from here
BUILDSTDERR: clipper_instance.cpp:96:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::Spgr_cacheobj>*, std::allocator<std::pair<int, clipper::Spgr_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < cache_.size(); i++ )
BUILDSTDERR: clipper_instance.cpp:105:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::Spgr_cacheobj>*, std::allocator<std::pair<int, clipper::Spgr_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:          for ( int i = 0; i < cache_.size(); i++ )
BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache<T>::~ObjectCache() [with T = clipper::HKL_data_cacheobj]':
BUILDSTDERR: clipper_instance.cpp:146:18:   required from here
BUILDSTDERR: clipper_instance.cpp:79:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::HKL_data_cacheobj>*, std::allocator<std::pair<int, clipper::HKL_data_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < cache_.size(); i++ ) {
BUILDSTDERR: clipper_instance.cpp: In instantiation of 'void clipper::ObjectCache<T>::debug() const [with T = clipper::HKL_data_cacheobj]':
BUILDSTDERR: clipper_instance.cpp:146:18:   required from here
BUILDSTDERR: clipper_instance.cpp:139:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::HKL_data_cacheobj>*, std::allocator<std::pair<int, clipper::HKL_data_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < cache_.size(); i++ )
BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache<T>::Reference clipper::ObjectCache<T>::cache(const typename T::Key&) [with T = clipper::HKL_data_cacheobj; typename T::Key = clipper::HKL_data_cacheobj::Key]':
BUILDSTDERR: clipper_instance.cpp:146:18:   required from here
BUILDSTDERR: clipper_instance.cpp:96:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::HKL_data_cacheobj>*, std::allocator<std::pair<int, clipper::HKL_data_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < cache_.size(); i++ )
BUILDSTDERR: clipper_instance.cpp:105:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::HKL_data_cacheobj>*, std::allocator<std::pair<int, clipper::HKL_data_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:          for ( int i = 0; i < cache_.size(); i++ )
BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache<T>::~ObjectCache() [with T = clipper::Xmap_cacheobj]':
BUILDSTDERR: clipper_instance.cpp:147:18:   required from here
BUILDSTDERR: clipper_instance.cpp:79:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::Xmap_cacheobj>*, std::allocator<std::pair<int, clipper::Xmap_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < cache_.size(); i++ ) {
BUILDSTDERR: clipper_instance.cpp: In instantiation of 'void clipper::ObjectCache<T>::debug() const [with T = clipper::Xmap_cacheobj]':
BUILDSTDERR: clipper_instance.cpp:147:18:   required from here
BUILDSTDERR: clipper_instance.cpp:139:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::Xmap_cacheobj>*, std::allocator<std::pair<int, clipper::Xmap_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < cache_.size(); i++ )
BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache<T>::Reference clipper::ObjectCache<T>::cache(const typename T::Key&) [with T = clipper::Xmap_cacheobj; typename T::Key = clipper::Xmap_cacheobj::Key]':
BUILDSTDERR: clipper_instance.cpp:147:18:   required from here
BUILDSTDERR: clipper_instance.cpp:96:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::Xmap_cacheobj>*, std::allocator<std::pair<int, clipper::Xmap_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < cache_.size(); i++ )
BUILDSTDERR: clipper_instance.cpp:105:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::Xmap_cacheobj>*, std::allocator<std::pair<int, clipper::Xmap_cacheobj>*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:          for ( int i = 0; i < cache_.size(); i++ )
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp
BUILDSTDERR: fftmap.cpp: In member function 'void clipper::FFTmap_p1::debug() const':
BUILDSTDERR: fftmap.cpp:253:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < datavec.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c resol_basisfn.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-resol_basisfn.o
BUILDSTDERR: fftmap.cpp: In instantiation of 'void clipper::FFTmap::set_real_data(const clipper::Coord_grid&, const T&) [with T = float]':
BUILDSTDERR: fftmap.cpp:428:89:   required from here
BUILDSTDERR: fftmap.cpp:407:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Isymop>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int sym = 1; sym < isymop.size(); sym++ )
BUILDSTDERR:                       ~~~~^~~~~~~~~~~~~~~
BUILDSTDERR: fftmap.cpp: In instantiation of 'void clipper::FFTmap::set_real_data(const clipper::Coord_grid&, const T&) [with T = double]':
BUILDSTDERR: fftmap.cpp:432:89:   required from here
BUILDSTDERR: fftmap.cpp:407:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Isymop>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: fftmap.cpp: At global scope:
BUILDSTDERR: fftmap.cpp:55:15: warning: 'dummy' defined but not used [-Wunused-variable]
BUILDSTDERR:  static float* dummy = (fftw_real*) NULL;
BUILDSTDERR:                ^~~~~
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_memory.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-clipper_memory.o
BUILDSTDERR: resol_basisfn.cpp: In member function 'void clipper::Resolution_ordinal::init(const clipper::HKL_info&, const ftype&)':
BUILDSTDERR: resol_basisfn.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < hist.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~
BUILDSTDERR: resol_basisfn.cpp: In member function 'void clipper::Resolution_ordinal::init(const clipper::HKL_data_base&, const ftype&)':
BUILDSTDERR: resol_basisfn.cpp:76:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < hist.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~
BUILDSTDERR: resol_basisfn.cpp: In member function 'void clipper::Resolution_ordinal::init(const clipper::HKL_data_base&, const clipper::Cell&, const ftype&)':
BUILDSTDERR: resol_basisfn.cpp:91:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < hist.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~
BUILDSTDERR: clipper_memory.cpp: In destructor 'clipper::PropertyManager::~PropertyManager()':
BUILDSTDERR: clipper_memory.cpp:63:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<std::__cxx11::basic_string<char>, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < property_.size(); i++ ) delete property_[i].second;
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: clipper_memory.cpp: In member function 'clipper::PropertyManager& clipper::PropertyManager::copy(const clipper::PropertyManager&)':
BUILDSTDERR: clipper_memory.cpp:73:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<std::__cxx11::basic_string<char>, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < property_.size(); i++ ) delete property_[i].second;
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: clipper_memory.cpp:75:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<std::__cxx11::basic_string<char>, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < mgr.property_.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: clipper_memory.cpp: In member function 'const clipper::Property_base& clipper::PropertyManager::get_property(const string&) const':
BUILDSTDERR: clipper_memory.cpp:99:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<std::__cxx11::basic_string<char>, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < property_.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: clipper_memory.cpp: In member function 'bool clipper::PropertyManager::exists_property(const string&) const':
BUILDSTDERR: clipper_memory.cpp:116:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<std::__cxx11::basic_string<char>, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < property_.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: clipper_memory.cpp: In member function 'bool clipper::PropertyManager::delete_property(const string&)':
BUILDSTDERR: clipper_memory.cpp:131:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<std::__cxx11::basic_string<char>, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < property_.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fftmap_sparse.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-fftmap_sparse.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c resol_fn.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-resol_fn.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_compute.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-hkl_compute.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_message.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-clipper_message.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c resol_targetfn.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-resol_targetfn.o
BUILDSTDERR: fftmap_sparse.cpp:55:15: warning: 'dummy' defined but not used [-Wunused-variable]
BUILDSTDERR:  static float* dummy = (fftw_real*) NULL;
BUILDSTDERR:                ^~~~~
BUILDSTDERR: In file included from cell.h:50,
BUILDSTDERR:                  from coords.h:49,
BUILDSTDERR:                  from hkl_lookup.h:49,
BUILDSTDERR:                  from hkl_info.h:49,
BUILDSTDERR:                  from hkl_data.h:49,
BUILDSTDERR:                  from resol_fn.h:48,
BUILDSTDERR:                  from resol_fn.cpp:44:
BUILDSTDERR: clipper_types.h: In instantiation of 'std::vector<T> clipper::Matrix<T>::solve(const std::vector<T>&) const [with T = double]':
BUILDSTDERR: resol_fn.cpp:180:32:   required from here
BUILDSTDERR: clipper_types.h:565:27: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    if ( Array2d<T>::rows() != b.size() )
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_stats.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-clipper_stats.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_data.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-hkl_data.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rotation.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-rotation.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_test.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-clipper_test.o
BUILDSTDERR: clipper_stats.cpp: In member function 'clipper::ftype clipper::Histogram::sum() const':
BUILDSTDERR: clipper_stats.cpp:52:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < data.size(); i++ ) s += data[i];
BUILDSTDERR:                     ~~^~~~~~~~~~~~~
BUILDSTDERR: clipper_stats.cpp: In member function 'const clipper::Histogram& clipper::Histogram::operator+=(const clipper::Histogram&)':
BUILDSTDERR: clipper_stats.cpp:70:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < data.size(); i++ ) data[i] += h.data[i];
BUILDSTDERR:                     ~~^~~~~~~~~~~~~
BUILDSTDERR: clipper_stats.cpp: In member function 'void clipper::Generic_ordinal::init(const std::vector<double>&, int)':
BUILDSTDERR: clipper_stats.cpp:87:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < values.size(); i++ ) range.include( values[i] );
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~
BUILDSTDERR: clipper_stats.cpp:89:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < values.size(); i++ ) accumulate( values[i] );
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~
BUILDSTDERR: clipper_stats.cpp: In member function 'void clipper::Generic_ordinal::prep_ordinal()':
BUILDSTDERR: clipper_stats.cpp:120:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 1; i < hist.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~
BUILDSTDERR: clipper_stats.cpp:122:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < hist.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~
BUILDSTDERR: clipper_stats.cpp: In member function 'void clipper::Generic_ordinal::invert()':
BUILDSTDERR: clipper_stats.cpp:131:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 1; i < hist.size()-1; i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~
BUILDSTDERR: clipper_test.cpp: In member function 'bool clipper::Test_base::test(const clipper::String&, const double&)':
BUILDSTDERR: clipper_test.cpp:66:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    if ( count < data_val.size() ) {
BUILDSTDERR:         ~~~~~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: clipper_test.cpp:74:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    } else if ( count == data_val.size() ) {
BUILDSTDERR:                ~~~~~~^~~~~~~~~~~~~~~~~~
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_datatypes.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-hkl_datatypes.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c spacegroup.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_types.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-clipper_types.o
BUILDSTDERR: spacegroup.cpp: In member function 'void clipper::Spgr_descr::Symop_codes::init_hall(const clipper::String&)':
BUILDSTDERR: spacegroup.cpp:115:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( j = 0; j < token.length(); j++ ) {
BUILDSTDERR:                 ~~^~~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:128:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( j = 0; j < token.length(); j++ ) {
BUILDSTDERR:                   ~~^~~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:214:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( k = 0; k < trans[i].length(); k++ ) {
BUILDSTDERR:                   ~~^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:256:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( i = 0; i < ops.size(); i++ )
BUILDSTDERR:                 ~~^~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In member function 'void clipper::Spgr_descr::Symop_codes::init_symops(const clipper::String&)':
BUILDSTDERR: spacegroup.cpp:264:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < symops.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::expand() const':
BUILDSTDERR: spacegroup.cpp:280:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( i = 0; i < generators.size(); i++ )
BUILDSTDERR:                   ~~^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:284:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( l = 0; l < ops.size(); l++ )
BUILDSTDERR:                  ~~^~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:286:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     if ( l == ops.size() ) ops.push_back( k );
BUILDSTDERR:          ~~^~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:289:24: warning: comparison of integer expressions of different signedness: 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
BUILDSTDERR:    } while ( ops.size() > size );
BUILDSTDERR:              ~~~~~~~~~~~^~~~~~
BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::primitive_noninversion_ops() const':
BUILDSTDERR: spacegroup.cpp:298:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < pops.size(); i++ )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::inversion_ops() const':
BUILDSTDERR: spacegroup.cpp:313:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( i = 0; i < ops.size(); i++ )
BUILDSTDERR:                 ~~^~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::primitive_ops() const':
BUILDSTDERR: spacegroup.cpp:324:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( i = 0; i < ops.size(); i++ ) {
BUILDSTDERR:                 ~~^~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:325:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( j = 0; j < pops.size(); j++ )
BUILDSTDERR:                   ~~^~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:327:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      if ( j == pops.size() ) pops.push_back( ops[i] );
BUILDSTDERR:           ~~^~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::centering_ops() const':
BUILDSTDERR: spacegroup.cpp:336:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < ops.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::laue_ops() const':
BUILDSTDERR: spacegroup.cpp:347:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < ops.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::pgrp_ops() const':
BUILDSTDERR: spacegroup.cpp:356:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < ops.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::patterson_ops() const':
BUILDSTDERR: spacegroup.cpp:366:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < ops.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::generator_ops() const':
BUILDSTDERR: spacegroup.cpp:384:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 1; i < cens.size(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:385:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int j = 0; j < gend.size(); j++ )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:395:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 1; i < prms.size(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:396:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int j = 0; j < gend.size(); j++ )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:405:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = ncen; i < gens.size(); i++ ) {
BUILDSTDERR:                        ~~^~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In member function 'unsigned int clipper::Spgr_descr::Symop_codes::hash() const':
BUILDSTDERR: spacegroup.cpp:437:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int word = 0; word < data.size(); word++ ) {
BUILDSTDERR:                        ~~~~~^~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In function 'bool clipper::reci_asu(const clipper::Spgr_descr::Symop_codes&, clipper::data::ASUfn)':
BUILDSTDERR: spacegroup.cpp:680:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( i = 0; i < ops.size(); i++ ) symops[i] = ops[i].isymop();
BUILDSTDERR:                 ~~^~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:687:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Isymop>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:            for ( i = 0; i < symops.size(); i++ ) {
BUILDSTDERR:                         ~~^~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:693:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Isymop>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:            if ( i != symops.size() ) return false;
BUILDSTDERR:                 ~~^~~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:695:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Isymop>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:            for ( i = 0; i < symops.size(); i++ ) {
BUILDSTDERR:                         ~~^~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:701:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Isymop>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:            if ( i == symops.size() ) return false;
BUILDSTDERR:                 ~~^~~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In function 'clipper::Vec3<double> clipper::real_asu(const clipper::Spgr_descr::Symop_codes&)':
BUILDSTDERR: spacegroup.cpp:713:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( i = 0; i < ops.size(); i++ ) symops[i] = ops[i].isymop();
BUILDSTDERR:                 ~~^~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:724:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Isymop>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( sym = 0; sym < symops.size(); sym++ )
BUILDSTDERR:                       ~~~~^~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:732:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Isymop>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( sym = 0; sym < symops.size(); sym++ )
BUILDSTDERR:                   ~~~~^~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:756:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int gui = 0; gui < gridlim.size(); gui++ )
BUILDSTDERR:                       ~~~~^~~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:757:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int gvi = 0; gvi < gridlim.size(); gvi++ )
BUILDSTDERR:                         ~~~~^~~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:758:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( int gwi = 0; gwi < gridlim.size(); gwi++ )
BUILDSTDERR:                           ~~~~^~~~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp:763:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Vec3<double> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( j = 0; j < grids.size(); j++ ) {
BUILDSTDERR:                 ~~^~~~~~~~~~~~~~
BUILDSTDERR: spacegroup.cpp: In constructor 'clipper::Spgr_cacheobj::Spgr_cacheobj(const Key&)':
BUILDSTDERR: spacegroup.cpp:827:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Symop_code>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < ops.size(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~
BUILDSTDERR: clipper_types.cpp: In member function 'clipper::String clipper::String::trim() const':
BUILDSTDERR: clipper_types.cpp:90:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( i = 0; i < length(); i++ )
BUILDSTDERR:                 ~~^~~~~~~~~~
BUILDSTDERR: clipper_types.cpp: In member function 'clipper::ftype clipper::String::rational() const':
BUILDSTDERR: clipper_types.cpp:149:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( i = 0; i < s.length(); i++ ) if ( s[i] == '/' ) break;
BUILDSTDERR:                 ~~^~~~~~~~~~~~
BUILDSTDERR: clipper_types.cpp:150:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    if ( i == s.length() ) return ( s.f() );
BUILDSTDERR:         ~~^~~~~~~~~~~~~
BUILDSTDERR: In file included from clipper_types.cpp:43:
BUILDSTDERR: clipper_types.h: In instantiation of 'std::vector<T> clipper::Matrix<T>::solve(const std::vector<T>&) const [with T = float]':
BUILDSTDERR: clipper_types.cpp:160:16:   required from here
BUILDSTDERR: clipper_types.h:565:27: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<float, std::allocator<float> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    if ( Array2d<T>::rows() != b.size() )
BUILDSTDERR: clipper_types.h: In instantiation of 'std::vector<T> clipper::Matrix<T>::solve(const std::vector<T>&) const [with T = double]':
BUILDSTDERR: clipper_types.cpp:165:16:   required from here
BUILDSTDERR: clipper_types.h:565:27: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<double, std::allocator<double> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_info.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-hkl_info.o
BUILDSTDERR: hkl_info.cpp: In member function 'void clipper::HKL_info::add_hkl_list(const std::vector<clipper::HKL>&)':
BUILDSTDERR: hkl_info.cpp:224:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::HKL>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < add.size(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c spacegroup_data.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup_data.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_util.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-clipper_util.o
BUILDSTDERR: clipper_util.cpp: In constructor 'clipper::Util::Util()':
BUILDSTDERR: clipper_util.cpp:75:6: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
BUILDSTDERR:      ((U32*)&nan_)->i = CLIPPER_NULL_MASK_32;
BUILDSTDERR:      ~^~~~~~~~~~~~
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_lookup.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-hkl_lookup.o
BUILDSTDERR: hkl_lookup.cpp: In member function 'void clipper::HKL_lookup::init(const std::vector<clipper::HKL>&)':
BUILDSTDERR: hkl_lookup.cpp:59:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::HKL>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for (i=0; i<hkl.size(); i++) {
BUILDSTDERR:              ~^~~~~~~~~~~
BUILDSTDERR: hkl_lookup.cpp:68:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::HKL>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for (i=0; i<hkl.size(); i++) {
BUILDSTDERR:              ~^~~~~~~~~~~
BUILDSTDERR: hkl_lookup.cpp:81:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::HKL>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for (i=0; i<hkl.size(); i++) {
BUILDSTDERR:              ~^~~~~~~~~~~
BUILDSTDERR: hkl_lookup.cpp:98:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::HKL>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for (i=0; i<hkl.size(); i++) {
BUILDSTDERR:              ~^~~~~~~~~~~
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-symop.lo `test -f 'symop.cpp' || echo './'`symop.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-container.lo `test -f 'container.cpp' || echo './'`container.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c symop.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-symop.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c container.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-container.o
BUILDSTDERR: symop.cpp: In constructor 'clipper::RTop_frac::RTop_frac(const clipper::String&)':
BUILDSTDERR: symop.cpp:70:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( nchr = 0; nchr < row.length(); nchr++ ) {
BUILDSTDERR:                      ~~~~~^~~~~~~~~~~~~~
BUILDSTDERR: symop.cpp:75:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( npart = 0; npart < cols.size(); npart++ ) {
BUILDSTDERR:                       ~~~~~~^~~~~~~~~~~~~
BUILDSTDERR: symop.cpp:79:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( nchr = 0; nchr < col.length(); nchr++ ) {
BUILDSTDERR:                        ~~~~~^~~~~~~~~~~~~~
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp
BUILDSTDERR: container.cpp: In member function 'void clipper::Container::del_child(clipper::Container&)':
BUILDSTDERR: container.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Container*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: container.cpp: In member function 'virtual void clipper::Container::update()':
BUILDSTDERR: container.cpp:68:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Container*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < children.size(); i++ ) child(i).update();
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: container.cpp: In destructor 'virtual clipper::Container::~Container()':
BUILDSTDERR: container.cpp:109:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Container*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < children.size(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: container.cpp: In member function 'const clipper::Container& clipper::Container::child(const int&) const':
BUILDSTDERR: container.cpp:159:19: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<clipper::Container*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    if ( i < 0 || i >= children.size() )
BUILDSTDERR:                  ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: container.cpp: In member function 'clipper::Container& clipper::Container::child(const int&)':
BUILDSTDERR: container.cpp:166:19: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<clipper::Container*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    if ( i < 0 || i >= children.size() )
BUILDSTDERR:                  ~~^~~~~~~~~~~~~~~~~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_operators.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-hkl_operators.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_abcd(const clipper::datatypes::ABCD<dtype>&) [with dtype = float; int N = 24]':
BUILDSTDERR: hkl_operators.cpp:314:87:   required from here
BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_abcd(clipper::datatypes::ABCD<dtype>&) const [with dtype = float; int N = 24]':
BUILDSTDERR: hkl_operators.cpp:315:83:   required from here
BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_phi_fom(const clipper::datatypes::Phi_fom<dtype>&) [with dtype = float; int N = 24]':
BUILDSTDERR: hkl_operators.cpp:316:97:   required from here
BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ )
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_phi_fom(clipper::datatypes::Phi_fom<dtype>&) const [with dtype = float; int N = 24]':
BUILDSTDERR: hkl_operators.cpp:317:93:   required from here
BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_abcd(const clipper::datatypes::ABCD<dtype>&) [with dtype = double; int N = 24]':
BUILDSTDERR: hkl_operators.cpp:318:87:   required from here
BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_abcd(clipper::datatypes::ABCD<dtype>&) const [with dtype = double; int N = 24]':
BUILDSTDERR: hkl_operators.cpp:319:83:   required from here
BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_phi_fom(const clipper::datatypes::Phi_fom<dtype>&) [with dtype = double; int N = 24]':
BUILDSTDERR: hkl_operators.cpp:320:97:   required from here
BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ )
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_phi_fom(clipper::datatypes::Phi_fom<dtype>&) const [with dtype = double; int N = 24]':
BUILDSTDERR: hkl_operators.cpp:321:93:   required from here
BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_abcd(const clipper::datatypes::ABCD<dtype>&) [with dtype = float; int N = 72]':
BUILDSTDERR: hkl_operators.cpp:323:87:   required from here
BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_abcd(clipper::datatypes::ABCD<dtype>&) const [with dtype = float; int N = 72]':
BUILDSTDERR: hkl_operators.cpp:324:83:   required from here
BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_phi_fom(const clipper::datatypes::Phi_fom<dtype>&) [with dtype = float; int N = 72]':
BUILDSTDERR: hkl_operators.cpp:325:97:   required from here
BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ )
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_phi_fom(clipper::datatypes::Phi_fom<dtype>&) const [with dtype = float; int N = 72]':
BUILDSTDERR: hkl_operators.cpp:326:93:   required from here
BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_abcd(const clipper::datatypes::ABCD<dtype>&) [with dtype = double; int N = 72]':
BUILDSTDERR: hkl_operators.cpp:327:87:   required from here
BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_abcd(clipper::datatypes::ABCD<dtype>&) const [with dtype = double; int N = 72]':
BUILDSTDERR: hkl_operators.cpp:328:83:   required from here
BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_phi_fom(const clipper::datatypes::Phi_fom<dtype>&) [with dtype = double; int N = 72]':
BUILDSTDERR: hkl_operators.cpp:329:97:   required from here
BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ )
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_phi_fom(clipper::datatypes::Phi_fom<dtype>&) const [with dtype = double; int N = 72]':
BUILDSTDERR: hkl_operators.cpp:330:93:   required from here
BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_abcd(const clipper::datatypes::ABCD<dtype>&) [with dtype = float; int N = 180]':
BUILDSTDERR: hkl_operators.cpp:332:88:   required from here
BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_abcd(clipper::datatypes::ABCD<dtype>&) const [with dtype = float; int N = 180]':
BUILDSTDERR: hkl_operators.cpp:333:84:   required from here
BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_phi_fom(const clipper::datatypes::Phi_fom<dtype>&) [with dtype = float; int N = 180]':
BUILDSTDERR: hkl_operators.cpp:334:98:   required from here
BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ )
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_phi_fom(clipper::datatypes::Phi_fom<dtype>&) const [with dtype = float; int N = 180]':
BUILDSTDERR: hkl_operators.cpp:335:94:   required from here
BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_abcd(const clipper::datatypes::ABCD<dtype>&) [with dtype = double; int N = 180]':
BUILDSTDERR: hkl_operators.cpp:336:88:   required from here
BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_abcd(clipper::datatypes::ABCD<dtype>&) const [with dtype = double; int N = 180]':
BUILDSTDERR: hkl_operators.cpp:337:84:   required from here
BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_phi_fom(const clipper::datatypes::Phi_fom<dtype>&) [with dtype = double; int N = 180]':
BUILDSTDERR: hkl_operators.cpp:338:98:   required from here
BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ )
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_phi_fom(clipper::datatypes::Phi_fom<dtype>&) const [with dtype = double; int N = 180]':
BUILDSTDERR: hkl_operators.cpp:339:94:   required from here
BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_abcd(const clipper::datatypes::ABCD<dtype>&) [with dtype = float; int N = 360]':
BUILDSTDERR: hkl_operators.cpp:341:88:   required from here
BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_abcd(clipper::datatypes::ABCD<dtype>&) const [with dtype = float; int N = 360]':
BUILDSTDERR: hkl_operators.cpp:342:84:   required from here
BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_phi_fom(const clipper::datatypes::Phi_fom<dtype>&) [with dtype = float; int N = 360]':
BUILDSTDERR: hkl_operators.cpp:343:98:   required from here
BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ )
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_phi_fom(clipper::datatypes::Phi_fom<dtype>&) const [with dtype = float; int N = 360]':
BUILDSTDERR: hkl_operators.cpp:344:94:   required from here
BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_abcd(const clipper::datatypes::ABCD<dtype>&) [with dtype = double; int N = 360]':
BUILDSTDERR: hkl_operators.cpp:345:88:   required from here
BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_abcd(clipper::datatypes::ABCD<dtype>&) const [with dtype = double; int N = 360]':
BUILDSTDERR: hkl_operators.cpp:346:84:   required from here
BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::set_phi_fom(const clipper::datatypes::Phi_fom<dtype>&) [with dtype = double; int N = 360]':
BUILDSTDERR: hkl_operators.cpp:347:98:   required from here
BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ )
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb<N>::get_phi_fom(clipper::datatypes::Phi_fom<dtype>&) const [with dtype = double; int N = 360]':
BUILDSTDERR: hkl_operators.cpp:348:94:   required from here
BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) q0 += q[p];
BUILDSTDERR:                     ~~^~~~~~~~~~
BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < q.size(); p++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c container_hkl.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-container_hkl.o
BUILDSTDERR: In file included from hkl_datatypes.h:49,
BUILDSTDERR:                  from hkl_operators.h:48,
BUILDSTDERR:                  from hkl_operators.cpp:43:
BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD<double>]':
BUILDSTDERR: hkl_data.h:418:26:   required from here
BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::ABCD<double>, std::allocator<clipper::datatypes::ABCD<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ )
BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<double>]':
BUILDSTDERR: hkl_data.h:418:26:   required from here
BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<double>, std::allocator<clipper::datatypes::F_phi<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD<float>]':
BUILDSTDERR: hkl_data.h:418:26:   required from here
BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::ABCD<float>, std::allocator<clipper::datatypes::ABCD<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<float>]':
BUILDSTDERR: hkl_data.h:418:26:   required from here
BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<float>, std::allocator<clipper::datatypes::F_phi<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Flag_bool]':
BUILDSTDERR: hkl_data.h:418:26:   required from here
BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::Flag_bool, std::allocator<clipper::datatypes::Flag_bool> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c map_interp.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-map_interp.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c container_map.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-container_map.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c map_utils.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-map_utils.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c xmap.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-xmap.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c container_types.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-container_types.o
BUILDSTDERR: In file included from xmap.cpp:43:
BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap<T>::set_data(const int&, const T&) [with T = unsigned char]':
BUILDSTDERR: xmap.cpp:231:16:   required from here
BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<unsigned char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      if ( index >= 0 && index < list.size() )
BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap<T>::set_data(const int&, const T&) [with T = char]':
BUILDSTDERR: xmap.cpp:232:16:   required from here
BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<char, std::allocator<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap<T>::set_data(const int&, const T&) [with T = short unsigned int]':
BUILDSTDERR: xmap.cpp:233:16:   required from here
BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<short unsigned int, std::allocator<short unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap<T>::set_data(const int&, const T&) [with T = short int]':
BUILDSTDERR: xmap.cpp:234:16:   required from here
BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<short int, std::allocator<short int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap<T>::set_data(const int&, const T&) [with T = unsigned int]':
BUILDSTDERR: xmap.cpp:235:16:   required from here
BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<unsigned int, std::allocator<unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap<T>::set_data(const int&, const T&) [with T = int]':
BUILDSTDERR: xmap.cpp:236:16:   required from here
BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap<T>::set_data(const int&, const T&) [with T = float]':
BUILDSTDERR: xmap.cpp:237:16:   required from here
BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap<T>::set_data(const int&, const T&) [with T = double]':
BUILDSTDERR: xmap.cpp:238:16:   required from here
BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nxmap.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-nxmap.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_thread.lo `test -f 'clipper_thread.cpp' || echo './'`clipper_thread.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_thread.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-clipper_thread.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c test_core.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-test_core.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c test_data.cpp  -fPIC -DPIC -o .libs/libclipper_core_la-test_data.o
BUILDSTDERR: test_core.cpp: In member function 'bool clipper::Test_core::operator()()':
BUILDSTDERR: test_core.cpp:153:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < resols.size(); i++ )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~
BUILDSTDERR: test_core.cpp:282:24: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < sizeof(pgs)/sizeof(pgs[0]); i++ )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: test_core.cpp:294:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int s = 0; s < hallsymbols.size(); s++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from hkl_datatypes.h:49,
BUILDSTDERR:                  from test_data.h:49,
BUILDSTDERR:                  from test_core.cpp:44:
BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<float>]':
BUILDSTDERR: hkl_data.h:418:26:   required from here
BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<float>, std::allocator<clipper::datatypes::F_phi<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ )
BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Phi_fom<float>]':
BUILDSTDERR: hkl_data.h:418:26:   required from here
BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::Phi_fom<float>, std::allocator<clipper::datatypes::Phi_fom<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF<float>]':
BUILDSTDERR: hkl_data.h:418:26:   required from here
BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_sigF<float>, std::allocator<clipper::datatypes::F_sigF<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD<float>]':
BUILDSTDERR: hkl_data.h:418:26:   required from here
BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::ABCD<float>, std::allocator<clipper::datatypes::ABCD<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: In file included from hkl_datatypes.h:49,
BUILDSTDERR:                  from test_data.h:49,
BUILDSTDERR:                  from test_data.cpp:43:
BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD<float>]':
BUILDSTDERR: hkl_data.h:418:26:   required from here
BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::ABCD<float>, std::allocator<clipper::datatypes::ABCD<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ )
BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF<float>]':
BUILDSTDERR: hkl_data.h:418:26:   required from here
BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_sigF<float>, std::allocator<clipper::datatypes::F_sigF<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/bin/sh ../../libtool  --tag=CXX   --mode=link g++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libclipper-core.la -rpath /usr/lib64 libclipper_core_la-atomsf.lo libclipper_core_la-coords.lo libclipper_core_la-nxmap_operator.lo libclipper_core_la-cell.lo libclipper_core_la-derivs.lo libclipper_core_la-ramachandran.lo libclipper_core_la-clipper_instance.lo libclipper_core_la-fftmap.lo libclipper_core_la-resol_basisfn.lo libclipper_core_la-clipper_memory.lo libclipper_core_la-fftmap_sparse.lo libclipper_core_la-resol_fn.lo libclipper_core_la-clipper_message.lo libclipper_core_la-hkl_compute.lo libclipper_core_la-resol_targetfn.lo libclipper_core_la-clipper_stats.lo libclipper_core_la-hkl_data.lo libclipper_core_la-rotation.lo libclipper_core_la-clipper_test.lo libclipper_core_la-hkl_datatypes.lo libclipper_core_la-spacegroup.lo libclipper_core_la-clipper_types.lo libclipper_core_la-hkl_info.lo libclipper_core_la-spacegroup_data.lo libclipper_core_la-clipper_util.lo libclipper_core_la-hkl_lookup.lo libclipper_core_la-symop.lo libclipper_core_la-container.lo libclipper_core_la-hkl_operators.lo libclipper_core_la-container_hkl.lo libclipper_core_la-map_interp.lo libclipper_core_la-container_map.lo libclipper_core_la-map_utils.lo libclipper_core_la-xmap.lo libclipper_core_la-container_types.lo libclipper_core_la-nxmap.lo libclipper_core_la-clipper_thread.lo libclipper_core_la-test_core.lo libclipper_core_la-test_data.lo -lsrfftw -lsfftw -lpthread -lm 
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  .libs/libclipper_core_la-atomsf.o .libs/libclipper_core_la-coords.o .libs/libclipper_core_la-nxmap_operator.o .libs/libclipper_core_la-cell.o .libs/libclipper_core_la-derivs.o .libs/libclipper_core_la-ramachandran.o .libs/libclipper_core_la-clipper_instance.o .libs/libclipper_core_la-fftmap.o .libs/libclipper_core_la-resol_basisfn.o .libs/libclipper_core_la-clipper_memory.o .libs/libclipper_core_la-fftmap_sparse.o .libs/libclipper_core_la-resol_fn.o .libs/libclipper_core_la-clipper_message.o .libs/libclipper_core_la-hkl_compute.o .libs/libclipper_core_la-resol_targetfn.o .libs/libclipper_core_la-clipper_stats.o .libs/libclipper_core_la-hkl_data.o .libs/libclipper_core_la-rotation.o .libs/libclipper_core_la-clipper_test.o .libs/libclipper_core_la-hkl_datatypes.o .libs/libclipper_core_la-spacegroup.o .libs/libclipper_core_la-clipper_types.o .libs/libclipper_core_la-hkl_info.o .libs/libclipper_core_la-spacegroup_data.o .libs/libclipper_core_la-clipper_util.o .libs/libclipper_core_la-hkl_lookup.o .libs/libclipper_core_la-symop.o .libs/libclipper_core_la-container.o .libs/libclipper_core_la-hkl_operators.o .libs/libclipper_core_la-container_hkl.o .libs/libclipper_core_la-map_interp.o .libs/libclipper_core_la-container_map.o .libs/libclipper_core_la-map_utils.o .libs/libclipper_core_la-xmap.o .libs/libclipper_core_la-container_types.o .libs/libclipper_core_la-nxmap.o .libs/libclipper_core_la-clipper_thread.o .libs/libclipper_core_la-test_core.o .libs/libclipper_core_la-test_data.o   -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-core.so.2 -o .libs/libclipper-core.so.2.0.1
libtool: link: (cd ".libs" && rm -f "libclipper-core.so.2" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so.2")
libtool: link: (cd ".libs" && rm -f "libclipper-core.so" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so")
libtool: link: ( cd ".libs" && rm -f "libclipper-core.la" && ln -s "../libclipper-core.la" "libclipper-core.la" )
make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core'
Making all in contrib
make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib'
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o convolution_search.lo convolution_search.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sfcalc.lo sfcalc.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o edcalc.lo edcalc.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sfcalc_obs.lo sfcalc_obs.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c edcalc.cpp  -fPIC -DPIC -o .libs/edcalc.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sfcalc.cpp  -fPIC -DPIC -o .libs/sfcalc.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c convolution_search.cpp  -fPIC -DPIC -o .libs/convolution_search.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sfcalc_obs.cpp  -fPIC -DPIC -o .libs/sfcalc_obs.o
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_mask<T>::operator()(clipper::Xmap<T>&, const clipper::Atom_list&) const [with T = float]':
BUILDSTDERR: edcalc.cpp:224:16:   required from here
BUILDSTDERR: edcalc.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_mask<T>::operator()(clipper::NXmap<T>&, const clipper::Atom_list&) const [with T = float]':
BUILDSTDERR: edcalc.cpp:224:16:   required from here
BUILDSTDERR: edcalc.cpp:87:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_mask<T>::operator()(clipper::Xmap<T>&, const clipper::Atom_list&) const [with T = double]':
BUILDSTDERR: edcalc.cpp:225:16:   required from here
BUILDSTDERR: edcalc.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_mask<T>::operator()(clipper::NXmap<T>&, const clipper::Atom_list&) const [with T = double]':
BUILDSTDERR: edcalc.cpp:225:16:   required from here
BUILDSTDERR: edcalc.cpp:87:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_iso<T>::operator()(clipper::Xmap<T>&, const clipper::Atom_list&) const [with T = float]':
BUILDSTDERR: edcalc.cpp:226:16:   required from here
BUILDSTDERR: edcalc.cpp:114:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_iso<T>::operator()(clipper::NXmap<T>&, const clipper::Atom_list&) const [with T = float]':
BUILDSTDERR: edcalc.cpp:226:16:   required from here
BUILDSTDERR: edcalc.cpp:144:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_iso<T>::operator()(clipper::Xmap<T>&, const clipper::Atom_list&) const [with T = double]':
BUILDSTDERR: edcalc.cpp:227:16:   required from here
BUILDSTDERR: edcalc.cpp:114:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_iso<T>::operator()(clipper::NXmap<T>&, const clipper::Atom_list&) const [with T = double]':
BUILDSTDERR: edcalc.cpp:227:16:   required from here
BUILDSTDERR: edcalc.cpp:144:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_aniso<T>::operator()(clipper::Xmap<T>&, const clipper::Atom_list&) const [with T = float]':
BUILDSTDERR: edcalc.cpp:228:16:   required from here
BUILDSTDERR: edcalc.cpp:171:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_aniso<T>::operator()(clipper::NXmap<T>&, const clipper::Atom_list&) const [with T = float]':
BUILDSTDERR: edcalc.cpp:228:16:   required from here
BUILDSTDERR: edcalc.cpp:203:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_aniso<T>::operator()(clipper::Xmap<T>&, const clipper::Atom_list&) const [with T = double]':
BUILDSTDERR: edcalc.cpp:229:16:   required from here
BUILDSTDERR: edcalc.cpp:171:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_aniso<T>::operator()(clipper::NXmap<T>&, const clipper::Atom_list&) const [with T = double]':
BUILDSTDERR: edcalc.cpp:229:16:   required from here
BUILDSTDERR: edcalc.cpp:203:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: sfcalc_obs.cpp: In instantiation of 'bool clipper::SFcalc_obs_bulk<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::HKL_data<clipper::datatypes::F_sigF<T> >&, const clipper::Atom_list&) [with T = float]':
BUILDSTDERR: sfcalc_obs.cpp:147:16:   required from here
BUILDSTDERR: sfcalc_obs.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atomu.size(); i++ ) if ( !atomu[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: sfcalc_obs.cpp: In instantiation of 'bool clipper::SFcalc_obs_bulk<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::HKL_data<clipper::datatypes::F_sigF<T> >&, const clipper::Atom_list&) [with T = double]':
BUILDSTDERR: sfcalc_obs.cpp:149:16:   required from here
BUILDSTDERR: sfcalc_obs.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_iso_sum<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::Atom_list&) const [with T = float]':
BUILDSTDERR: sfcalc.cpp:192:16:   required from here
BUILDSTDERR: sfcalc.cpp:60:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_aniso_sum<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::Atom_list&) const [with T = float]':
BUILDSTDERR: sfcalc.cpp:193:16:   required from here
BUILDSTDERR: sfcalc.cpp:87:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_iso_fft<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::Atom_list&) const [with T = float]':
BUILDSTDERR: sfcalc.cpp:194:16:   required from here
BUILDSTDERR: sfcalc.cpp:117:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_aniso_fft<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::Atom_list&) const [with T = float]':
BUILDSTDERR: sfcalc.cpp:195:16:   required from here
BUILDSTDERR: sfcalc.cpp:159:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_iso_sum<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::Atom_list&) const [with T = double]':
BUILDSTDERR: sfcalc.cpp:197:16:   required from here
BUILDSTDERR: sfcalc.cpp:60:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_aniso_sum<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::Atom_list&) const [with T = double]':
BUILDSTDERR: sfcalc.cpp:198:16:   required from here
BUILDSTDERR: sfcalc.cpp:87:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_iso_fft<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::Atom_list&) const [with T = double]':
BUILDSTDERR: sfcalc.cpp:199:16:   required from here
BUILDSTDERR: sfcalc.cpp:117:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_aniso_fft<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::Atom_list&) const [with T = double]':
BUILDSTDERR: sfcalc.cpp:200:16:   required from here
BUILDSTDERR: sfcalc.cpp:159:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::Atom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49,
BUILDSTDERR:                  from function_object_bases.h:50,
BUILDSTDERR:                  from sfcalc.h:50,
BUILDSTDERR:                  from sfcalc.cpp:43:
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data<T>& clipper::HKL_data<T>::operator=(const T&) [with T = clipper::datatypes::F_phi<float>]':
BUILDSTDERR: sfcalc.cpp:57:12:   required from 'bool clipper::SFcalc_iso_sum<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::Atom_list&) const [with T = float]'
BUILDSTDERR: sfcalc.cpp:192:16:   required from here
BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<float>, std::allocator<clipper::datatypes::F_phi<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ ) list[i] = value;
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data<T>& clipper::HKL_data<T>::operator=(const T&) [with T = clipper::datatypes::F_phi<double>]':
BUILDSTDERR: sfcalc.cpp:57:12:   required from 'bool clipper::SFcalc_iso_sum<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::Atom_list&) const [with T = double]'
BUILDSTDERR: sfcalc.cpp:197:16:   required from here
BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<double>, std::allocator<clipper::datatypes::F_phi<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49,
BUILDSTDERR:                  from function_object_bases.h:50,
BUILDSTDERR:                  from sfcalc_obs.h:49,
BUILDSTDERR:                  from sfcalc_obs.cpp:43:
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<double>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<double>, std::allocator<clipper::datatypes::F_phi<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ )
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<float>, std::allocator<clipper::datatypes::F_phi<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o fffear.lo fffear.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fffear.cpp  -fPIC -DPIC -o .libs/fffear.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sfscale.lo sfscale.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sfscale.cpp  -fPIC -DPIC -o .libs/sfscale.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o function_object_bases.lo function_object_bases.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sfweight.lo sfweight.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c function_object_bases.cpp  -fPIC -DPIC -o .libs/function_object_bases.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sfweight.cpp  -fPIC -DPIC -o .libs/sfweight.o
BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49,
BUILDSTDERR:                  from function_object_bases.h:50,
BUILDSTDERR:                  from sfscale.h:49,
BUILDSTDERR:                  from sfscale.cpp:43:
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data<T>& clipper::HKL_data<T>::operator=(const T&) [with T = clipper::datatypes::F_sigF<float>]':
BUILDSTDERR: sfscale.cpp:156:7:   required from 'bool clipper::SFscale_aniso<T>::scale(clipper::HKL_data<S>&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF<float>; T1 = clipper::TargetFn_scaleF1F2<clipper::datatypes::F_sigF<float>, clipper::datatypes::F_sigF<float> >; T2 = clipper::TargetFn_scaleLogF1F2<clipper::datatypes::F_sigF<float>, clipper::datatypes::F_sigF<float> >; S = clipper::BasisFn_binner; T = float; clipper::ftype = double]'
BUILDSTDERR: sfscale.cpp:258:327:   required from here
BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_sigF<float>, std::allocator<clipper::datatypes::F_sigF<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ ) list[i] = value;
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data<T>& clipper::HKL_data<T>::operator=(const T&) [with T = clipper::datatypes::I_sigI<float>]':
BUILDSTDERR: sfscale.cpp:156:7:   required from 'bool clipper::SFscale_aniso<T>::scale(clipper::HKL_data<S>&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI<float>; T1 = clipper::TargetFn_scaleI1I2<clipper::datatypes::I_sigI<float>, clipper::datatypes::I_sigI<float> >; T2 = clipper::TargetFn_scaleLogI1I2<clipper::datatypes::I_sigI<float>, clipper::datatypes::I_sigI<float> >; S = clipper::BasisFn_binner; T = float; clipper::ftype = double]'
BUILDSTDERR: sfscale.cpp:261:327:   required from here
BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::I_sigI<float>, std::allocator<clipper::datatypes::I_sigI<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data<T>& clipper::HKL_data<T>::operator=(const T&) [with T = clipper::datatypes::F_sigF<double>]':
BUILDSTDERR: sfscale.cpp:156:7:   required from 'bool clipper::SFscale_aniso<T>::scale(clipper::HKL_data<S>&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF<double>; T1 = clipper::TargetFn_scaleF1F2<clipper::datatypes::F_sigF<double>, clipper::datatypes::F_sigF<double> >; T2 = clipper::TargetFn_scaleLogF1F2<clipper::datatypes::F_sigF<double>, clipper::datatypes::F_sigF<double> >; S = clipper::BasisFn_binner; T = double; clipper::ftype = double]'
BUILDSTDERR: sfscale.cpp:266:327:   required from here
BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_sigF<double>, std::allocator<clipper::datatypes::F_sigF<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data<T>& clipper::HKL_data<T>::operator=(const T&) [with T = clipper::datatypes::I_sigI<double>]':
BUILDSTDERR: sfscale.cpp:156:7:   required from 'bool clipper::SFscale_aniso<T>::scale(clipper::HKL_data<S>&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI<double>; T1 = clipper::TargetFn_scaleI1I2<clipper::datatypes::I_sigI<double>, clipper::datatypes::I_sigI<double> >; T2 = clipper::TargetFn_scaleLogI1I2<clipper::datatypes::I_sigI<double>, clipper::datatypes::I_sigI<double> >; S = clipper::BasisFn_binner; T = double; clipper::ftype = double]'
BUILDSTDERR: sfscale.cpp:269:327:   required from here
BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::I_sigI<double>, std::allocator<clipper::datatypes::I_sigI<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::I_sigI<double>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::I_sigI<double>, std::allocator<clipper::datatypes::I_sigI<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ )
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<double>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<double>, std::allocator<clipper::datatypes::F_phi<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF<double>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_sigF<double>, std::allocator<clipper::datatypes::F_sigF<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::I_sigI<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::I_sigI<float>, std::allocator<clipper::datatypes::I_sigI<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<float>, std::allocator<clipper::datatypes::F_phi<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_sigF<float>, std::allocator<clipper::datatypes::F_sigF<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o mapfilter.lo mapfilter.cpp
BUILDSTDERR: sfweight.cpp: In instantiation of 'void clipper::SFweight_spline<T>::init(int, int, int) [with T = float]':
BUILDSTDERR: sfweight.cpp:479:16:   required from here
BUILDSTDERR: sfweight.cpp:177:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SFweight_spline<float>::HLterms, std::allocator<clipper::SFweight_spline<float>::HLterms> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int a = 0; a < hlterms.size(); a++ ) {
BUILDSTDERR: sfweight.cpp: In instantiation of 'clipper::SFweight_spline<T>::TargetResult clipper::SFweight_spline<T>::TargetHL::operator()(clipper::HKL_class, const clipper::datatypes::F_sigF<T>&, const clipper::datatypes::ABCD<T>&, const clipper::datatypes::F_phi<T>&, const ftype&, const ftype&, const std::vector<clipper::SFweight_spline<T>::HLterms>&) [with T = float; clipper::ftype = double]':
BUILDSTDERR: sfweight.cpp:479:16:   required from here
BUILDSTDERR: sfweight.cpp:129:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SFweight_spline<float>::HLterms, std::allocator<clipper::SFweight_spline<float>::HLterms> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int a = a_zero; a < hlterms.size(); a += a_step ) {
BUILDSTDERR: sfweight.cpp: In instantiation of 'void clipper::SFweight_spline<T>::init(int, int, int) [with T = double]':
BUILDSTDERR: sfweight.cpp:481:16:   required from here
BUILDSTDERR: sfweight.cpp:177:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SFweight_spline<double>::HLterms, std::allocator<clipper::SFweight_spline<double>::HLterms> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int a = 0; a < hlterms.size(); a++ ) {
BUILDSTDERR: sfweight.cpp: In instantiation of 'clipper::SFweight_spline<T>::TargetResult clipper::SFweight_spline<T>::TargetHL::operator()(clipper::HKL_class, const clipper::datatypes::F_sigF<T>&, const clipper::datatypes::ABCD<T>&, const clipper::datatypes::F_phi<T>&, const ftype&, const ftype&, const std::vector<clipper::SFweight_spline<T>::HLterms>&) [with T = double; clipper::ftype = double]':
BUILDSTDERR: sfweight.cpp:481:16:   required from here
BUILDSTDERR: sfweight.cpp:129:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SFweight_spline<double>::HLterms, std::allocator<clipper::SFweight_spline<double>::HLterms> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int a = a_zero; a < hlterms.size(); a += a_step ) {
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mapfilter.cpp  -fPIC -DPIC -o .libs/mapfilter.o
BUILDSTDERR: In file included from ../core/cell.h:50,
BUILDSTDERR:                  from ../core/coords.h:49,
BUILDSTDERR:                  from ../core/hkl_lookup.h:49,
BUILDSTDERR:                  from ../core/hkl_info.h:49,
BUILDSTDERR:                  from ../core/hkl_data.h:49,
BUILDSTDERR:                  from ../core/hkl_datatypes.h:49,
BUILDSTDERR:                  from function_object_bases.h:50,
BUILDSTDERR:                  from sfweight.h:49,
BUILDSTDERR:                  from sfweight.cpp:43:
BUILDSTDERR: ../core/clipper_types.h: In instantiation of 'std::vector<T> clipper::Matrix<T>::solve(const std::vector<T>&) const [with T = double]':
BUILDSTDERR: sfweight.cpp:303:26:   required from 'bool clipper::SFweight_spline<T>::evaluate(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, clipper::HKL_data<clipper::datatypes::F_phi<T> >&, clipper::HKL_data<clipper::datatypes::Phi_fom<T> >&, clipper::HKL_data<clipper::datatypes::ABCD<T> >&, const clipper::HKL_data<clipper::datatypes::F_sigF<T> >&, const clipper::HKL_data<clipper::datatypes::ABCD<T> >&, const clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::HKL_data<clipper::datatypes::Flag>&, F) [with F = clipper::SFweight_spline<float>::TargetFo; T = float]'
BUILDSTDERR: sfweight.cpp:191:64:   required from 'bool clipper::SFweight_spline<T>::operator()(clipper::HKL_data<clipper::datatypes::F_phi<T> >&, clipper::HKL_data<clipper::datatypes::F_phi<T> >&, clipper::HKL_data<clipper::datatypes::Phi_fom<T> >&, const clipper::HKL_data<clipper::datatypes::F_sigF<T> >&, const clipper::HKL_data<clipper::datatypes::F_phi<T> >&, const clipper::HKL_data<clipper::datatypes::Flag>&) [with T = float]'
BUILDSTDERR: sfweight.cpp:479:16:   required from here
BUILDSTDERR: ../core/clipper_types.h:565:27: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    if ( Array2d<T>::rows() != b.size() )
BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49,
BUILDSTDERR:                  from function_object_bases.h:50,
BUILDSTDERR:                  from sfweight.h:49,
BUILDSTDERR:                  from sfweight.cpp:43:
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::E_sigE<double>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::E_sigE<double>, std::allocator<clipper::datatypes::E_sigE<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ )
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<double>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<double>, std::allocator<clipper::datatypes::F_phi<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::E_sigE<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::E_sigE<float>, std::allocator<clipper::datatypes::E_sigE<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<float>, std::allocator<clipper::datatypes::F_phi<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF<double>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_sigF<double>, std::allocator<clipper::datatypes::F_sigF<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD<double>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::ABCD<double>, std::allocator<clipper::datatypes::ABCD<double> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_sigF<float>, std::allocator<clipper::datatypes::F_sigF<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::ABCD<float>, std::allocator<clipper::datatypes::ABCD<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Flag_bool]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::Flag_bool, std::allocator<clipper::datatypes::Flag_bool> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o skeleton.lo skeleton.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c skeleton.cpp  -fPIC -DPIC -o .libs/skeleton.o
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o originmatch.lo originmatch.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c originmatch.cpp  -fPIC -DPIC -o .libs/originmatch.o
BUILDSTDERR: skeleton.cpp: In member function 'virtual bool clipper::Skeleton_basic::operator()(clipper::Xmap<int>&, const clipper::Xmap<float>&) const':
BUILDSTDERR: skeleton.cpp:126:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < index.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: In file included from function_object_bases.h:51,
BUILDSTDERR:                  from skeleton.h:50,
BUILDSTDERR:                  from skeleton.cpp:42:
BUILDSTDERR: ../core/xmap.h: In instantiation of 'bool clipper::Xmap<T>::set_data(const int&, const T&) [with T = int]':
BUILDSTDERR: skeleton.cpp:128:36:   required from here
BUILDSTDERR: ../core/xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      if ( index >= 0 && index < list.size() )
BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast<T1, T2>::operator()(clipper::Xmap<T>&, const clipper::Xmap<T2>&) const [with T1 = char; T2 = float]':
BUILDSTDERR: skeleton.cpp:347:16:   required from here
BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < index.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast<T1, T2>::operator()(clipper::Xmap<T>&, const clipper::Xmap<T2>&) const [with T1 = char; T2 = double]':
BUILDSTDERR: skeleton.cpp:348:16:   required from here
BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast<T1, T2>::operator()(clipper::Xmap<T>&, const clipper::Xmap<T2>&) const [with T1 = short int; T2 = float]':
BUILDSTDERR: skeleton.cpp:349:16:   required from here
BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast<T1, T2>::operator()(clipper::Xmap<T>&, const clipper::Xmap<T2>&) const [with T1 = short int; T2 = double]':
BUILDSTDERR: skeleton.cpp:350:16:   required from here
BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast<T1, T2>::operator()(clipper::Xmap<T>&, const clipper::Xmap<T2>&) const [with T1 = int; T2 = float]':
BUILDSTDERR: skeleton.cpp:351:16:   required from here
BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast<T1, T2>::operator()(clipper::Xmap<T>&, const clipper::Xmap<T2>&) const [with T1 = int; T2 = double]':
BUILDSTDERR: skeleton.cpp:352:16:   required from here
BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: In file included from function_object_bases.h:51,
BUILDSTDERR:                  from skeleton.h:50,
BUILDSTDERR:                  from skeleton.cpp:42:
BUILDSTDERR: ../core/xmap.h: In instantiation of 'bool clipper::Xmap<T>::set_data(const int&, const T&) [with T = char]':
BUILDSTDERR: skeleton.cpp:273:7:   required from 'bool clipper::Skeleton_fast<T1, T2>::operator()(clipper::Xmap<T>&, const clipper::Xmap<T2>&) const [with T1 = char; T2 = float]'
BUILDSTDERR: skeleton.cpp:347:16:   required from here
BUILDSTDERR: ../core/xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<char, std::allocator<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      if ( index >= 0 && index < list.size() )
BUILDSTDERR: ../core/xmap.h: In instantiation of 'bool clipper::Xmap<T>::set_data(const int&, const T&) [with T = short int]':
BUILDSTDERR: skeleton.cpp:273:7:   required from 'bool clipper::Skeleton_fast<T1, T2>::operator()(clipper::Xmap<T>&, const clipper::Xmap<T2>&) const [with T1 = short int; T2 = float]'
BUILDSTDERR: skeleton.cpp:349:16:   required from here
BUILDSTDERR: ../core/xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<short int, std::allocator<short int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49,
BUILDSTDERR:                  from function_object_bases.h:50,
BUILDSTDERR:                  from originmatch.h:49,
BUILDSTDERR:                  from originmatch.cpp:43:
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<float>, std::allocator<clipper::datatypes::F_phi<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ )
/bin/sh ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o test_contrib.lo test_contrib.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c test_contrib.cpp  -fPIC -DPIC -o .libs/test_contrib.o
BUILDSTDERR: test_contrib.cpp: In member function 'bool clipper::Test_contrib::operator()()':
BUILDSTDERR: test_contrib.cpp:113:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int s = 0; s < hallsymbols.size(); s++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: test_contrib.cpp:220:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < params_e1.size(); i++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49,
BUILDSTDERR:                  from function_object_bases.h:50,
BUILDSTDERR:                  from mapfilter.h:50,
BUILDSTDERR:                  from test_contrib.cpp:44:
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data<T>& clipper::HKL_data<T>::operator=(const T&) [with T = clipper::datatypes::ABCD<float>]':
BUILDSTDERR: test_contrib.cpp:183:45:   required from here
BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::ABCD<float>, std::allocator<clipper::datatypes::ABCD<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ ) list[i] = value;
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Flag]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::Flag, std::allocator<clipper::datatypes::Flag> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ )
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Phi_fom<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::Phi_fom<float>, std::allocator<clipper::datatypes::Phi_fom<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<float>, std::allocator<clipper::datatypes::F_phi<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::ABCD<float>, std::allocator<clipper::datatypes::ABCD<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF<float>]':
BUILDSTDERR: ../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_sigF<float>, std::allocator<clipper::datatypes::F_sigF<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/bin/sh ../../libtool  --tag=CXX   --mode=link g++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libclipper-contrib.la -rpath /usr/lib64 convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm 
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o   ../core/.libs/libclipper-core.so -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1
libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so.2" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so.2")
libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so")
libtool: link: ( cd ".libs" && rm -f "libclipper-contrib.la" && ln -s "../libclipper-contrib.la" "libclipper-contrib.la" )
make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib'
make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper'
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o mmdb/clipper_mmdb.lo mmdb/clipper_mmdb.cpp
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/minimol.lo minimol/minimol.cpp
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/container_minimol.lo minimol/container_minimol.cpp
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/minimol_data.lo minimol/minimol_data.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/minimol_data.cpp  -fPIC -DPIC -o minimol/.libs/minimol_data.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mmdb/clipper_mmdb.cpp  -fPIC -DPIC -o mmdb/.libs/clipper_mmdb.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/container_minimol.cpp  -fPIC -DPIC -o minimol/.libs/container_minimol.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/minimol.cpp  -fPIC -DPIC -o minimol/.libs/minimol.o
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/minimol_io.lo minimol/minimol_io.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/minimol_io.cpp  -fPIC -DPIC -o minimol/.libs/minimol_io.o
BUILDSTDERR: minimol/minimol.cpp: In static member function 'static clipper::String clipper::MAtom::id_tidy(const clipper::String&)':
BUILDSTDERR: minimol/minimol.cpp:99:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   if ( pos == String::npos ) pos = id.length();
BUILDSTDERR:        ~~~~^~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::Atom_list clipper::MMonomer::atom_list() const':
BUILDSTDERR: minimol/minimol.cpp:149:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MAtom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   for ( int a = 0; a < children.size(); a++ )
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'void clipper::MMonomer::transform(clipper::RTop_orth)':
BUILDSTDERR: minimol/minimol.cpp:155:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MAtom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:  { for ( int i = 0; i < children.size(); i++ ) children[i].transform( rt ); }
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::MMonomer clipper::MMonomer::select(const clipper::String&, clipper::MM::MODE) const':
BUILDSTDERR: minimol/minimol.cpp:177:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MAtom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int i = 0; i < children.size(); i++ ) result.insert( children[i] );
BUILDSTDERR:                      ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:180:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int j = 0; j < list.size(); j++ ) {
BUILDSTDERR:                      ~~^~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:182:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MAtom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:       for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                        ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'std::vector<int> clipper::MMonomer::select_index(const clipper::String&, clipper::MM::MODE) const':
BUILDSTDERR: minimol/minimol.cpp:199:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MAtom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int i = 0; i < children.size(); i++ ) result.push_back( i );
BUILDSTDERR:                      ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:202:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int j = 0; j < list.size(); j++ ) {
BUILDSTDERR:                      ~~^~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:204:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MAtom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:       for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                        ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'int clipper::MMonomer::lookup(const clipper::String&, const clipper::MM::MODE&) const':
BUILDSTDERR: minimol/minimol.cpp:234:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MAtom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In static member function 'static clipper::String clipper::MMonomer::id_tidy(const clipper::String&)':
BUILDSTDERR: minimol/minimol.cpp:300:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   if ( pos == String::npos )
BUILDSTDERR:        ~~~~^~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::Atom_list clipper::MPolymer::atom_list() const':
BUILDSTDERR: minimol/minimol.cpp:318:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MMonomer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   for ( int m = 0; m < children.size(); m++ )
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'void clipper::MPolymer::transform(clipper::RTop_orth)':
BUILDSTDERR: minimol/minimol.cpp:325:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MMonomer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:  { for ( int i = 0; i < children.size(); i++ ) children[i].transform( rt ); }
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::MPolymer clipper::MPolymer::select(const clipper::String&, clipper::MM::MODE) const':
BUILDSTDERR: minimol/minimol.cpp:348:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MMonomer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                      ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:352:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int j = 0; j < list.size(); j++ ) {
BUILDSTDERR:                      ~~^~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:354:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MMonomer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:       for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                        ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'std::vector<int> clipper::MPolymer::select_index(const clipper::String&, clipper::MM::MODE) const':
BUILDSTDERR: minimol/minimol.cpp:371:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MMonomer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                      ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:375:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int j = 0; j < list.size(); j++ ) {
BUILDSTDERR:                      ~~^~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:377:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MMonomer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:       for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                        ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'int clipper::MPolymer::lookup(const clipper::String&, const clipper::MM::MODE&) const':
BUILDSTDERR: minimol/minimol.cpp:407:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MMonomer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::Atom_list clipper::MModel::atom_list() const':
BUILDSTDERR: minimol/minimol.cpp:482:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MPolymer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   for ( int p = 0; p < children.size(); p++ )
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'void clipper::MModel::transform(clipper::RTop_orth)':
BUILDSTDERR: minimol/minimol.cpp:490:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MPolymer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:  { for ( int i = 0; i < children.size(); i++ ) children[i].transform( rt ); }
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::MModel clipper::MModel::select(const clipper::String&, clipper::MM::MODE) const':
BUILDSTDERR: minimol/minimol.cpp:514:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MPolymer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                      ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:518:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int j = 0; j < list.size(); j++ ) {
BUILDSTDERR:                      ~~^~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:520:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MPolymer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:       for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                        ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'std::vector<int> clipper::MModel::select_index(const clipper::String&, clipper::MM::MODE) const':
BUILDSTDERR: minimol/minimol.cpp:537:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MPolymer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                      ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:541:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int j = 0; j < list.size(); j++ ) {
BUILDSTDERR:                      ~~^~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:543:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MPolymer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:       for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                        ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'int clipper::MModel::lookup(const clipper::String&, const clipper::MM::MODE&) const':
BUILDSTDERR: minimol/minimol.cpp:572:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MPolymer>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp: In member function 'std::vector<clipper::MAtomIndex> clipper::MModel::select_atom_index(const clipper::String&, clipper::MM::MODE) const':
BUILDSTDERR: minimol/minimol.cpp:658:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   for ( int p = 0; p < mps.size(); p++ ) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:661:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int m = 0; m < mms.size(); m++ ) {
BUILDSTDERR:                      ~~^~~~~~~~~~~~
BUILDSTDERR: minimol/minimol.cpp:664:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:       for ( int a = 0; a < mas.size(); a++ ) {
BUILDSTDERR:                        ~~^~~~~~~~~~~~
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/minimol_seq.lo minimol/minimol_seq.cpp
BUILDSTDERR: minimol/minimol_io.cpp: In member function 'void clipper::MMDBfile::export_minimol(const clipper::MiniMol&)':
BUILDSTDERR: minimol/minimol_io.cpp:224:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SPoly>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < smod.data.size(); p++ ) {  // loop over chains
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:229:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SMono>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int r = 0; r < spol.data.size(); r++ ) {  // loop over residues
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:234:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SAtom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( int a = 0; a < smon.data.size(); a++ ) {  // loop over atoms
BUILDSTDERR:                         ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:248:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SPoly>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:     for ( int p = 0; p < smod.data.size(); p++ ) {  // loop over chains
BUILDSTDERR:                      ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:255:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SMono>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:       for ( int r = 0; r < spol.data.size(); r++ ) {  // loop over residues
BUILDSTDERR:                        ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:262:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SAtom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:         for ( int a = 0; a < smon.data.size(); a++ ) {  // loop over atoms
BUILDSTDERR:                          ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:277:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SPoly>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < smod.data.size(); p++ ) {  // loop over chains
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:283:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SMono>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int r = 0; r < spol.data.size(); r++ ) {  // loop over residues
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:289:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SAtom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( int a = 0; a < smon.data.size(); a++ ) {  // loop over atoms
BUILDSTDERR:                         ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SPoly>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int p = 0; p < smod.data.size(); p++ ) {  // loop over chains
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:303:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SMono>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int r = 0; r < spol.data.size(); r++ ) {  // loop over residues
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:308:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        if ( pos != String::npos )
BUILDSTDERR:             ~~~~^~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:310:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::SAtom>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( int a = 0; a < smon.data.size(); a++ ) {  // loop over atoms
BUILDSTDERR:                         ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp: In member function 'void clipper::SEQfile::import_molecule_sequence(clipper::MMoleculeSequence&)':
BUILDSTDERR: minimol/minimol_io.cpp:373:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int l = 0; l < lines.size(); l++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_io.cpp:386:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( int i = 0; i < line.length(); i++ )
BUILDSTDERR:                         ~~^~~~~~~~~~~~~~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/minimol_seq.cpp  -fPIC -DPIC -o minimol/.libs/minimol_seq.o
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp
BUILDSTDERR: minimol/minimol_seq.cpp: In member function 'int clipper::MMoleculeSequence::lookup(const clipper::String&, const clipper::MM::MODE&) const':
BUILDSTDERR: minimol/minimol_seq.cpp:78:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MPolymerSequence>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < children.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/minimol_utils.cpp  -fPIC -DPIC -o minimol/.libs/minimol_utils.o
BUILDSTDERR: minimol/minimol_utils.cpp: In constructor 'clipper::MAtomNonBond::MAtomNonBond(const clipper::MiniMol&, double)':
BUILDSTDERR: minimol/minimol_utils.cpp:91:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, clipper::MAtomIndexSymmetry> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < iatoms.size(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_utils.cpp:93:34: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} and 'std::vector<std::pair<int, clipper::MAtomIndexSymmetry> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      if ( lookup[iatoms[i].first] == iatoms.size() )
BUILDSTDERR: minimol/minimol_utils.cpp: In member function 'std::vector<clipper::MAtomIndexSymmetry> clipper::MAtomNonBond::operator()(const clipper::Coord_orth&, double) const':
BUILDSTDERR: minimol/minimol_utils.cpp:145:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::MAtomIndexSymmetry>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < atoms.size(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~
BUILDSTDERR: minimol/minimol_utils.cpp: In member function 'void clipper::MAtomNonBond::debug() const':
BUILDSTDERR: minimol/minimol_utils.cpp:157:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < lookup.size(); i++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o phs/phs_io.lo phs/phs_io.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c phs/phs_io.cpp  -fPIC -DPIC -o phs/.libs/phs_io.o
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cif/cif_data_io.lo cif/cif_data_io.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cif/cif_data_io.cpp  -fPIC -DPIC -o cif/.libs/cif_data_io.o
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_types.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ccp4/ccp4_mtz_types.cpp  -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o
BUILDSTDERR: cif/cif_data_io.cpp: In member function 'void clipper::CIFfile::close_read()':
BUILDSTDERR: cif/cif_data_io.cpp:202:7: warning: variable 'ret_val' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int ret_val = 0;
BUILDSTDERR:        ^~~~~~~
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ccp4/ccp4_mtz_io.lo ccp4/ccp4_mtz_io.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ccp4/ccp4_mtz_io.cpp  -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ccp4/ccp4_map_io.cpp  -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o
BUILDSTDERR: cif/cif_data_io.cpp:364:15: warning: 'D_sigma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x1[1] = D_sigma;
BUILDSTDERR:          ~~~~~~^~~~~~~~~
BUILDSTDERR: cif/cif_data_io.cpp:395:18: warning: 'sigI_plus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:         x_anom[1] = sigI_plus;
BUILDSTDERR:         ~~~~~~~~~~^~~~~~~~~~~
BUILDSTDERR: cif/cif_data_io.cpp:397:18: warning: 'sigI_minus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:         x_anom[3] = sigI_minus;
BUILDSTDERR:         ~~~~~~~~~~^~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In function 'const std::vector<clipper::String> clipper::mtz_assign(const clipper::String&, const clipper::String&, const clipper::String&, const int&)':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:206:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for (int i=0; i < list.size(); i++) mtz_names[i] = assign + "." + type + "." + list[i];
BUILDSTDERR:                    ~~^~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:213:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for (int i=0; i < list.size(); i++) mtz_names[i] = pref + list[i];
BUILDSTDERR:                    ~~^~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In function 'void clipper::write_spacegroup(CMtz::MTZ*, const clipper::Spacegroup&, const char&)':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:263:22: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for ( int s = 0; s < sizeof(ccp4_code)/sizeof(ccp4_code[0]); s++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In function 'void clipper::write_hierarchy(CMtz::MTZ*, std::vector<clipper::CCP4MTZfile::crystalinf>&)':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:345:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::crystalinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for (int x = 0; x < crystals.size(); x ++ ) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:353:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::datasetinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for (int s = 0; s < crystals[x].datasets.size(); s ++ ) {
BUILDSTDERR:                      ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:358:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::datacolinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for (int c = 0; c < crystals[x].datasets[s].columns.size(); c ++ ) {
BUILDSTDERR:                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In function 'void clipper::reference_cols(CMtz::MTZ*, std::vector<CMtz::MTZCOL*>, std::vector<std::vector<clipper::CCP4MTZfile::hkldatacol> >, std::vector<std::vector<int> >&, std::vector<std::vector<double> >&)':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:389:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<CMtz::MTZCOL*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   for ( mcol = 0; mcol < lookup.size(); mcol++ )
BUILDSTDERR:                   ~~~~~^~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:392:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<CMtz::MTZCOL*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   if ( mcol == lookup.size() )
BUILDSTDERR:        ~~~~~^~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'bool clipper::CCP4MTZfile::match_path(const clipper::String&, int&, int&, int&)':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:405:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::crystalinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( x = 0; x < crystals.size(); x ++ )
BUILDSTDERR:                 ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:407:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::datasetinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( s = 0; s < crystals[x].datasets.size(); s ++ )
BUILDSTDERR:                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:409:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::datacolinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( c = 0; c < crystals[x].datasets[s].columns.size(); c ++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:413:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::crystalinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( x = 0; x < crystals.size(); x ++ )
BUILDSTDERR:                 ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:415:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::datasetinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( s = 0; s < crystals[x].datasets.size(); s ++ )
BUILDSTDERR:                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:419:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::crystalinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( x = 0; x < crystals.size(); x ++ )
BUILDSTDERR:                 ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::open_read(clipper::String)':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:490:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int h = 0; h < history_.size(); h++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::close_read()':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:558:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<CMtz::MTZCOL*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < lookup_i.size(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:570:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::HKL_data_base*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( lst = 0; lst < hkl_data_i.size(); lst++ ) hkl_data_i[lst]->update();
BUILDSTDERR:                   ~~~~^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:581:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( lst = 0; lst < cols.size(); lst++ ) {
BUILDSTDERR:                     ~~~~^~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:583:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( col = 0; col < cols[lst].size(); col++ ) {
BUILDSTDERR:                       ~~~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::close_write()':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:674:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int h = 0; h < history_.size(); h++ )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:675:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( int c = 0; c < history_[h].size(); c++ )
BUILDSTDERR:                         ~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:701:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( lst = 0; lst < cols.size(); lst++ ) {
BUILDSTDERR:                     ~~~~^~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:705:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( col = 0; col < cols[lst].size(); col++ ) {
BUILDSTDERR:                       ~~~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:718:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<CMtz::MTZCOL*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( c = 0; c < lookup_o.size(); c++ )
BUILDSTDERR:                   ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::open_append(clipper::String, clipper::String)':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:776:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int h = 0; h < history_.size(); h++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::close_append()':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:822:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<CMtz::MTZCOL*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < lookup_i.size(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:847:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::String>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int h = 0; h < history_.size(); h++ )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:848:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( int c = 0; c < history_[h].size(); c++ )
BUILDSTDERR:                         ~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:865:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<CMtz::MTZCOL*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < lookup_i.size(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:867:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<CMtz::MTZCOL*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( c = 0; c < lookup_o.size(); c++ )
BUILDSTDERR:                   ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:869:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<CMtz::MTZCOL*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      if ( c == lookup_o.size() )
BUILDSTDERR:           ~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:885:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < cpcols.size(); i++ ) {
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:890:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( lst = 0; lst < cols.size(); lst++ ) {
BUILDSTDERR:                     ~~~~^~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:894:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( col = 0; col < cols[lst].size(); col++ ) {
BUILDSTDERR:                       ~~~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:907:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<CMtz::MTZCOL*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( c = 0; c < lookup_o.size(); c++ )
BUILDSTDERR:                   ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::import_hkl_list(clipper::HKL_info&)':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:974:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<CMtz::MTZCOL*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < lookup_i.size(); i++ ) {
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'std::vector<clipper::String> clipper::CCP4MTZfile::column_paths() const':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1361:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::crystalinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( x = 0; x < crystals.size(); x ++ )
BUILDSTDERR:                 ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1362:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::datasetinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( s = 0; s < crystals[x].datasets.size(); s ++ )
BUILDSTDERR:                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1363:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::datacolinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( c = 0; c < crystals[x].datasets[s].columns.size(); c ++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'std::vector<clipper::String> clipper::CCP4MTZfile::column_labels() const':
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1449:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::crystalinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int x = 0; x < crystals.size(); x++ )
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1450:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::datasetinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int s = 0; s < crystals[x].datasets.size(); s++ )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1451:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::CCP4MTZfile::datacolinf>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:        for ( int c = 0; c < crystals[x].datasets[s].columns.size(); c++ )
BUILDSTDERR:                         ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp
BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap<T>&) [with T = unsigned char]':
BUILDSTDERR: ccp4/ccp4_map_io.cpp:582:88:   required from here
BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int j = 0; j < strop.length(); j++ ) symop[j] = strop[j];
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~
BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap<T>&) [with T = char]':
BUILDSTDERR: ccp4/ccp4_map_io.cpp:583:70:   required from here
BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap<T>&) [with T = short unsigned int]':
BUILDSTDERR: ccp4/ccp4_map_io.cpp:584:90:   required from here
BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap<T>&) [with T = short int]':
BUILDSTDERR: ccp4/ccp4_map_io.cpp:585:72:   required from here
BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap<T>&) [with T = unsigned int]':
BUILDSTDERR: ccp4/ccp4_map_io.cpp:586:86:   required from here
BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap<T>&) [with T = int]':
BUILDSTDERR: ccp4/ccp4_map_io.cpp:587:68:   required from here
BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap<T>&) [with T = float]':
BUILDSTDERR: ccp4/ccp4_map_io.cpp:588:76:   required from here
BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap<T>&) [with T = double]':
BUILDSTDERR: ccp4/ccp4_map_io.cpp:589:76:   required from here
BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ccp4/ccp4_utils.cpp  -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o
BUILDSTDERR: In file included from ccp4/../core/container_hkl.h:50,
BUILDSTDERR:                  from ccp4/ccp4_mtz_types.h:49,
BUILDSTDERR:                  from ccp4/ccp4_mtz_io.h:49,
BUILDSTDERR:                  from ccp4/ccp4_mtz_io.cpp:42:
BUILDSTDERR: ccp4/../core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Flag]':
BUILDSTDERR: ccp4/../core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ccp4/../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::Flag, std::allocator<clipper::datatypes::Flag> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ )
BUILDSTDERR: ccp4/ccp4_utils.cpp: In constructor 'CCP4CommandInput::CCP4CommandInput(int, char**, bool)':
BUILDSTDERR: ccp4/ccp4_utils.cpp:64:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:       if ( i != std::string::npos ) {
BUILDSTDERR:            ~~^~~~~~
BUILDSTDERR: ccp4/ccp4_utils.cpp:70:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:         if ( i != std::string::npos ) {
BUILDSTDERR:              ~~^~~~~~
BUILDSTDERR: ccp4/ccp4_utils.cpp:73:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    if ( i != std::string::npos ) {
BUILDSTDERR:         ~~^~~~~~
BUILDSTDERR: ccp4/ccp4_utils.cpp:86:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 1; i < size(); i++ ) {
BUILDSTDERR:                       ~~^~~~~~~~
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cns/cns_hkl_io.cpp  -fPIC -DPIC -o cns/.libs/cns_hkl_io.o
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cns/cns_map_io.lo cns/cns_map_io.cpp
BUILDSTDERR: cns/cns_hkl_io.cpp: In member function 'void clipper::CNS_HKLfile::close_read()':
BUILDSTDERR: cns/cns_hkl_io.cpp:180:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<clipper::HKL_data_base*, clipper::String> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:    for ( int i = 0; i < fphis_i.size(); i++ ) fphis_i[i].first->update();
BUILDSTDERR:                     ~~^~~~~~~~~~~~~~~~
BUILDSTDERR: cns/cns_hkl_io.cpp:200:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<clipper::HKL_data_base*, clipper::String> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < fphis_i.size(); i++ ) fphis[i][0]=fphis[i][1]=0.0;
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~
BUILDSTDERR: cns/cns_hkl_io.cpp:224:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<clipper::HKL_data_base*, clipper::String> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:   for ( int i = 0; i < fphis_i.size(); i++ )
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~
BUILDSTDERR: cns/cns_hkl_io.cpp:236:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<clipper::HKL_data_base*, clipper::String> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < fphis_i.size(); i++ )
BUILDSTDERR:                       ~~^~~~~~~~~~~~~~~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cns/cns_map_io.cpp  -fPIC -DPIC -o cns/.libs/cns_map_io.o
BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap<T>&) [with T = unsigned char]':
BUILDSTDERR: cns/cns_map_io.cpp:621:90:   required from here
BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    float cp[6];
BUILDSTDERR:          ^~
BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap<T>&) [with T = char]':
BUILDSTDERR: cns/cns_map_io.cpp:622:72:   required from here
BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap<T>&) [with T = short unsigned int]':
BUILDSTDERR: cns/cns_map_io.cpp:623:92:   required from here
BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap<T>&) [with T = short int]':
BUILDSTDERR: cns/cns_map_io.cpp:624:74:   required from here
BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap<T>&) [with T = unsigned int]':
BUILDSTDERR: cns/cns_map_io.cpp:625:88:   required from here
BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap<T>&) [with T = int]':
BUILDSTDERR: cns/cns_map_io.cpp:626:70:   required from here
BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap<T>&) [with T = float]':
BUILDSTDERR: cns/cns_map_io.cpp:627:78:   required from here
BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap<T>&) [with T = double]':
BUILDSTDERR: cns/cns_map_io.cpp:628:78:   required from here
BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = unsigned char]':
BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = char]':
BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = short unsigned int]':
BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = short int]':
BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = unsigned int]':
BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = int]':
BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = float]':
BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = double]':
BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = unsigned char]':
BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = char]':
BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = short unsigned int]':
BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = short int]':
BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = unsigned int]':
BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = int]':
BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = float]':
BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = double]':
BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap<T>&, T) [with T = float]':
BUILDSTDERR: cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap<T>&, T) [with T = double]':
BUILDSTDERR: cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // could be blank line first
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);;
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(buf,512,f);;
BUILDSTDERR:    ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(buf,512,f);; // read slice number line
BUILDSTDERR:      ~~~~~^~~~~~~~~~~
BUILDSTDERR: cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(buf,512,f);;
BUILDSTDERR:            ~~~~~^~~~~~~~~~~
/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  -I..   -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o fortran/f_interface.lo fortran/f_interface.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fortran/f_interface.cpp  -fPIC -DPIC -o fortran/.libs/f_interface.o
BUILDSTDERR: In file included from ../clipper/core/container_hkl.h:50,
BUILDSTDERR:                  from ../clipper/clipper.h:7,
BUILDSTDERR:                  from fortran/f_interface.cpp:1:
BUILDSTDERR: ../clipper/core/hkl_data.h: In instantiation of 'void clipper::HKL_data<T>::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi<float>]':
BUILDSTDERR: ../clipper/core/hkl_data.h:418:26:   required from here
BUILDSTDERR: ../clipper/core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<clipper::datatypes::F_phi<float>, std::allocator<clipper::datatypes::F_phi<float> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
BUILDSTDERR:      for ( int i = 0; i < list.size(); i++ )
/bin/sh ../libtool  --tag=CXX   --mode=link g++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o mmdb/libclipper-mmdb.la -rpath /usr/lib64 mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm 
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  mmdb/.libs/clipper_mmdb.o   core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1
libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2")
/bin/sh ../libtool  --tag=CXX   --mode=link g++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o phs/libclipper-phs.la -rpath /usr/lib64 phs/phs_io.lo core/libclipper-core.la -lm 
libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so")
libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" )
/bin/sh ../libtool  --tag=CXX   --mode=link g++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cif/libclipper-cif.la -rpath /usr/lib64 cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm 
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  phs/.libs/phs_io.o   core/.libs/libclipper-core.so -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  cif/.libs/cif_data_io.o   core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1
libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2")
libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so")
libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" )
/bin/sh ../libtool  --tag=CXX   --mode=link g++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o fortran/libclipper-fortran.la -rpath /usr/lib64 fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm 
libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2")
libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so")
libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" )
/bin/sh ../libtool  --tag=CXX   --mode=link g++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o minimol/libclipper-minimol.la -rpath /usr/lib64 minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm 
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  fortran/.libs/f_interface.o   core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o   core/.libs/libclipper-core.so mmdb/.libs/libclipper-mmdb.so -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1
libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2")
libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so")
libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" )
libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so.2" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so.2")
libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so")
libtool: link: ( cd "minimol/.libs" && rm -f "libclipper-minimol.la" && ln -s "../libclipper-minimol.la" "libclipper-minimol.la" )
/bin/sh ../libtool  --tag=CXX   --mode=link g++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cns/libclipper-cns.la -rpath /usr/lib64 cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm 
/bin/sh ../libtool  --tag=CXX   --mode=link g++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ccp4/libclipper-ccp4.la -rpath /usr/lib64 ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm 
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o   core/.libs/libclipper-core.so -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o   core/.libs/libclipper-core.so -lccp4c -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1
libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2")
libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so")
libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" )
libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2")
libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so")
libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" )
make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper'
make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper'
Making all in examples
make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/examples'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/examples'
make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708'
make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708'
make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708'
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bgQ0CY
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64
+ cd clipper-2.1.20160708
+ rm -rf /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64
+ make install DESTDIR=/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64 'INSTALL=install -p' 'CPPROG=cp -p'
Making install in clipper
make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper'
Making install in core
make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core'
make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64'
 /bin/sh ../../libtool   --mode=install install -p   libclipper-core.la '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64'
libtool: install: install -p .libs/libclipper-core.so.2.0.1 /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-core.so.2.0.1
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; })
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; })
libtool: install: install -p .libs/libclipper-core.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-core.la
BUILDSTDERR: libtool: warning: remember to run 'libtool --finish /usr/lib64'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/core'
 install -p -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/core'
 install -p -m 644 test_data.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/core'
make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core'
make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core'
Making install in contrib
make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib'
make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64'
 /bin/sh ../../libtool   --mode=install install -p   libclipper-contrib.la '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64'
BUILDSTDERR: libtool: warning: relinking 'libclipper-contrib.la'
libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool"  --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libclipper-contrib.la -rpath /usr/lib64 convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o   -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1
libtool: install: install -p .libs/libclipper-contrib.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-contrib.so.2.0.1
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; })
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; })
libtool: install: install -p .libs/libclipper-contrib.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-contrib.la
BUILDSTDERR: libtool: warning: remember to run 'libtool --finish /usr/lib64'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/contrib'
 install -p -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/contrib'
make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib'
make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib'
make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper'
make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64'
 /bin/sh ../libtool   --mode=install install -p   mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64'
BUILDSTDERR: libtool: warning: relinking 'mmdb/libclipper-mmdb.la'
libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool"  --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o mmdb/libclipper-mmdb.la -rpath /usr/lib64 mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  mmdb/.libs/clipper_mmdb.o   -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1
libtool: install: install -p mmdb/.libs/libclipper-mmdb.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-mmdb.so.2.0.1
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; })
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; })
libtool: install: install -p mmdb/.libs/libclipper-mmdb.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-mmdb.la
BUILDSTDERR: libtool: warning: relinking 'minimol/libclipper-minimol.la'
libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool"  --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o minimol/libclipper-minimol.la -rpath /usr/lib64 minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o   -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -lclipper-mmdb -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1
libtool: install: install -p minimol/.libs/libclipper-minimol.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-minimol.so.2.0.1
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; })
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; })
libtool: install: install -p minimol/.libs/libclipper-minimol.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-minimol.la
BUILDSTDERR: libtool: warning: relinking 'phs/libclipper-phs.la'
libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool"  --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o phs/libclipper-phs.la -rpath /usr/lib64 phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  phs/.libs/phs_io.o   -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1
libtool: install: install -p phs/.libs/libclipper-phs.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-phs.so.2.0.1
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; })
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; })
libtool: install: install -p phs/.libs/libclipper-phs.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-phs.la
BUILDSTDERR: libtool: warning: relinking 'cif/libclipper-cif.la'
libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool"  --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cif/libclipper-cif.la -rpath /usr/lib64 cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  cif/.libs/cif_data_io.o   -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1
libtool: install: install -p cif/.libs/libclipper-cif.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cif.so.2.0.1
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; })
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; })
libtool: install: install -p cif/.libs/libclipper-cif.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cif.la
BUILDSTDERR: libtool: warning: relinking 'ccp4/libclipper-ccp4.la'
libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool"  --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ccp4/libclipper-ccp4.la -rpath /usr/lib64 ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o   -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -lccp4c -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1
libtool: install: install -p ccp4/.libs/libclipper-ccp4.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-ccp4.so.2.0.1
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; })
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; })
libtool: install: install -p ccp4/.libs/libclipper-ccp4.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-ccp4.la
BUILDSTDERR: libtool: warning: relinking 'cns/libclipper-cns.la'
libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool"  --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cns/libclipper-cns.la -rpath /usr/lib64 cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o   -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1
libtool: install: install -p cns/.libs/libclipper-cns.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cns.so.2.0.1
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; })
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; })
libtool: install: install -p cns/.libs/libclipper-cns.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cns.la
BUILDSTDERR: libtool: warning: relinking 'fortran/libclipper-fortran.la'
libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool"  --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o fortran/libclipper-fortran.la -rpath /usr/lib64 fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o  fortran/.libs/f_interface.o   -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -lclipper-contrib -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1
libtool: install: install -p fortran/.libs/libclipper-fortran.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-fortran.so.2.0.1
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; })
libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; })
libtool: install: install -p fortran/.libs/libclipper-fortran.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-fortran.la
BUILDSTDERR: libtool: warning: remember to run 'libtool --finish /usr/lib64'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/ccp4'
 install -p -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/ccp4'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/cif'
 install -p -m 644 cif/cif_data_io.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/cif'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/cns'
 install -p -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/cns'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/minimol'
 install -p -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/minimol'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/mmdb'
 install -p -m 644 mmdb/clipper_mmdb.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/mmdb'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/phs'
 install -p -m 644 phs/phs_io.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/phs'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper'
 install -p -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h minimal-clipper-map.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper'
make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper'
make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper'
make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper'
Making install in examples
make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/examples'
make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/examples'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/examples'
make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/examples'
make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708'
make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708'
make[2]: Nothing to be done for 'install-exec-am'.
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/pkgconfig'
 install -p -m 644 clipper.pc '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/pkgconfig'
make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708'
make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708'
+ rm -f /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-ccp4.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cif.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cns.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-contrib.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-core.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-fortran.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-minimol.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-mmdb.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-phs.la
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip /usr/bin/strip
+ /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Processing files: clipper-2.1-20160712.1.fc29.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.r9r833
+ umask 022
+ cd /builddir/build/BUILD
+ cd clipper-2.1.20160708
+ DOCDIR=/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper
+ cp -pr README /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper
+ cp -pr AUTHORS /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper
+ cp -pr COPYING /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper
+ exit 0
Provides: clipper = 2.1-20160712.1.fc29 clipper(riscv-64) = 2.1-20160712.1.fc29 libclipper-ccp4.so.2()(64bit) libclipper-cif.so.2()(64bit) libclipper-cns.so.2()(64bit) libclipper-contrib.so.2()(64bit) libclipper-core.so.2()(64bit) libclipper-fortran.so.2()(64bit) libclipper-minimol.so.2()(64bit) libclipper-mmdb.so.2()(64bit) libclipper-phs.so.2()(64bit)
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libccp4c.so.0()(64bit) libclipper-contrib.so.2()(64bit) libclipper-core.so.2()(64bit) libclipper-mmdb.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libmmdb2.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) libsfftw.so.2()(64bit) libsrfftw.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: clipper-devel-2.1-20160712.1.fc29.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.FJbngy
+ umask 022
+ cd /builddir/build/BUILD
+ cd clipper-2.1.20160708
+ DOCDIR=/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper-devel
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper-devel
+ cp -pr dox /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper-devel
+ exit 0
Provides: clipper-devel = 2.1-20160712.1.fc29 clipper-devel(riscv-64) = 2.1-20160712.1.fc29 pkgconfig(clipper) = 2.1.20160708
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config libclipper-ccp4.so.2()(64bit) libclipper-cif.so.2()(64bit) libclipper-cns.so.2()(64bit) libclipper-contrib.so.2()(64bit) libclipper-core.so.2()(64bit) libclipper-fortran.so.2()(64bit) libclipper-minimol.so.2()(64bit) libclipper-mmdb.so.2()(64bit) libclipper-phs.so.2()(64bit) pkgconfig(libccp4c) pkgconfig(mmdb2)
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64
Wrote: /builddir/build/RPMS/clipper-2.1-20160712.1.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/clipper-devel-2.1-20160712.1.fc29.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.1pHlUD
+ umask 022
+ cd /builddir/build/BUILD
+ cd clipper-2.1.20160708
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64
+ exit 0
Child return code was: 0